Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00121 * 2 1 4 4 H 1.09004 * 109.57396 * 30.16218 * 3 2 1 5 5 C 1.53091 * 109.52338 * 270.00464 * 3 2 1 6 6 O 1.42908 * 109.42351 * 182.49300 * 5 3 2 7 7 C 1.42900 * 114.10137 * 61.14678 * 6 5 3 8 8 C 1.53087 * 109.41688 * 298.84557 * 7 6 5 9 9 C 1.53181 * 109.53224 * 150.31124 * 3 2 1 10 10 H 1.08993 * 109.60679 * 56.96815 * 9 3 2 11 11 C 1.53001 * 109.54233 * 296.74778 * 9 3 2 12 12 C 1.50699 * 109.46837 * 175.43333 * 11 9 3 13 13 O 1.21281 * 120.00086 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00003 * 180.02562 * 12 11 9 15 15 C 1.46503 * 120.00252 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47077 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46986 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.47080 * 179.97438 * 17 16 15 19 19 C 1.36934 * 119.99864 * 90.00306 * 18 17 16 20 20 H 1.07998 * 119.99676 * 216.87476 * 19 18 17 21 21 C 1.38812 * 120.00216 * 36.87409 * 19 18 17 22 22 N 1.31624 * 119.99708 * 21.19099 * 21 19 18 23 23 Si 1.86797 * 120.00112 * 201.18852 * 21 19 18 24 24 H 1.48509 * 109.46801 * 90.00500 * 23 21 19 25 25 H 1.48503 * 109.47415 * 209.99958 * 23 21 19 26 26 H 1.48496 * 109.47350 * 330.00620 * 23 21 19 27 27 C 1.46499 * 120.00093 * 269.99941 * 18 17 16 28 28 C 1.52990 * 117.50087 * 194.47934 * 27 18 17 29 29 C 1.53001 * 117.49826 * 125.81823 * 27 18 17 30 30 H 1.09006 * 109.46563 * 300.00090 * 1 2 3 31 31 H 1.08999 * 109.46905 * 59.99100 * 1 2 3 32 32 H 1.08991 * 109.46728 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.48174 * 62.50022 * 5 3 2 34 34 H 1.09005 * 109.47899 * 302.47458 * 5 3 2 35 35 H 1.09004 * 109.47595 * 58.82883 * 7 6 5 36 36 H 1.09001 * 109.48097 * 178.84647 * 7 6 5 37 37 H 1.09001 * 109.52321 * 177.51123 * 8 7 6 38 38 H 1.08998 * 109.52474 * 297.63836 * 8 7 6 39 39 H 1.08996 * 109.47298 * 295.43388 * 11 9 3 40 40 H 1.08993 * 109.47124 * 55.43371 * 11 9 3 41 41 H 0.96997 * 119.99990 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.46551 * 299.99687 * 15 14 12 43 43 H 1.08993 * 109.47365 * 59.99452 * 15 14 12 44 44 H 1.09004 * 109.47272 * 299.99365 * 16 15 14 45 45 H 1.09002 * 109.47606 * 59.99586 * 16 15 14 46 46 H 1.08996 * 109.47264 * 299.99925 * 17 16 15 47 47 H 1.09006 * 109.46967 * 60.00127 * 17 16 15 48 48 H 0.97005 * 119.99821 * 174.84579 * 22 21 19 49 49 H 1.09001 * 115.54844 * 340.15313 * 27 18 17 50 50 H 1.09009 * 117.49954 * 0.02562 * 28 27 18 51 51 H 1.09004 * 117.50378 * 145.02044 * 28 27 18 52 52 H 1.08997 * 117.49809 * 214.97966 * 29 27 18 53 53 H 1.08998 * 117.49591 * 359.97438 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3476 2.0003 0.5160 5 6 2.2183 1.7729 -1.4429 6 8 2.8526 3.0535 -1.4408 7 6 4.1432 3.0644 -0.8273 8 6 4.0125 2.6491 0.6404 9 6 3.3643 1.2632 0.7150 10 1 4.0110 0.5317 0.2306 11 6 3.1576 0.8731 2.1800 12 6 4.4972 0.7226 2.8535 13 8 5.5169 0.9085 2.2238 14 7 4.5622 0.3803 4.1555 15 6 5.8645 0.2345 4.8105 16 6 5.6577 -0.1557 6.2754 17 6 7.0178 -0.3086 6.9593 18 7 6.8198 -0.6816 8.3621 19 6 6.7502 -2.0026 8.7160 20 1 6.0719 -2.3179 9.4951 21 6 7.5513 -2.9365 8.0734 22 7 8.6429 -2.5484 7.4487 23 14 7.0802 -4.7440 8.0953 24 1 6.2185 -5.0451 6.9239 25 1 8.3084 -5.5765 8.0333 26 1 6.3392 -5.0473 9.3459 27 6 6.6964 0.3586 9.3863 28 6 6.8319 -0.0702 10.8486 29 6 5.4614 0.3186 10.2886 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.2532 1.8461 -1.9440 34 1 2.8481 1.0561 -1.9699 35 1 4.7982 2.3645 -1.3462 36 1 4.5647 4.0679 -0.8852 37 1 5.0009 2.6141 1.0985 38 1 3.3912 3.3717 1.1695 39 1 2.5821 1.6490 2.6848 40 1 2.6168 -0.0718 2.2315 41 1 3.7466 0.2313 4.6591 42 1 6.4404 -0.5409 4.3054 43 1 6.4047 1.1797 4.7595 44 1 5.0819 0.6201 6.7803 45 1 5.1172 -1.1009 6.3269 46 1 7.5932 -1.0844 6.4544 47 1 7.5586 0.6365 6.9078 48 1 9.2418 -3.2074 7.0640 49 1 7.0870 1.3382 9.1108 50 1 7.0133 -1.1263 11.0488 51 1 7.3113 0.6274 11.5354 52 1 5.0398 1.2719 10.6071 53 1 4.7406 -0.4814 10.1198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660691779.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -114.028304 kcal Electronic energy + Delta-G solvation = -30117.299291 eV Core-core repulsion = 25989.392394 eV Total energy + Delta-G solvation = -4127.906897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35059 -40.19674 -38.86528 -38.26547 -36.72483 -35.30475 -35.12295 -33.35723 -31.51932 -31.25434 -29.74954 -27.48539 -27.13085 -25.49276 -24.20014 -24.06913 -22.93286 -22.45447 -21.68392 -21.45816 -20.98989 -18.30812 -18.20609 -17.73048 -17.39451 -17.30906 -17.07754 -16.74267 -16.50276 -16.23031 -16.16940 -15.81893 -15.74358 -15.31611 -14.94274 -14.67398 -14.52173 -14.13751 -13.87295 -13.80029 -13.61211 -13.43558 -13.31079 -13.09924 -12.78054 -12.68342 -12.56618 -12.36806 -12.29179 -12.16060 -12.14749 -12.01670 -11.97940 -11.74074 -11.58568 -11.43238 -11.24916 -11.05925 -10.90735 -10.79846 -10.42909 -10.18983 -10.02580 -8.43332 -7.84171 -5.44944 1.42426 1.45900 1.53118 1.67187 2.22038 2.46613 2.56247 3.06015 3.14940 3.44975 3.50036 3.57728 3.61585 3.78685 3.95099 4.06965 4.17139 4.18198 4.28094 4.31122 4.32876 4.40593 4.46553 4.48160 4.50857 4.55898 4.58568 4.63907 4.71376 4.73840 4.76528 4.81688 4.84834 4.91218 4.97092 4.98956 5.01695 5.06414 5.13244 5.19204 5.24003 5.35641 5.47975 5.51260 5.57003 5.67184 5.83798 6.00040 6.31771 6.46645 6.60544 7.15171 7.29555 7.85970 8.35987 9.11217 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002106 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.303560 B =13290.105292 C =13822.332073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.068 3.932 4 H 0.086 0.914 5 C 0.040 3.960 6 O -0.390 6.390 7 C 0.058 3.942 8 C -0.149 4.149 9 C -0.070 4.070 10 H 0.062 0.938 11 C -0.123 4.123 12 C 0.506 3.494 13 O -0.581 6.581 14 N -0.719 5.719 15 C 0.135 3.865 16 C -0.121 4.121 17 C 0.150 3.850 18 N -0.568 5.568 19 C -0.258 4.258 20 H 0.055 0.945 21 C -0.033 4.033 22 N -0.918 5.918 23 Si 0.954 3.046 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.102 3.898 28 C -0.201 4.201 29 C -0.200 4.200 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.413 0.587 42 H 0.040 0.960 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.031 0.969 48 H 0.253 0.747 49 H 0.104 0.896 50 H 0.069 0.931 51 H 0.100 0.900 52 H 0.106 0.894 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 11.113 -13.734 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.010 3.990 4 H 0.104 0.896 5 C -0.038 4.038 6 O -0.309 6.309 7 C -0.019 4.019 8 C -0.186 4.186 9 C -0.089 4.089 10 H 0.080 0.920 11 C -0.163 4.163 12 C 0.294 3.706 13 O -0.462 6.462 14 N -0.371 5.371 15 C 0.010 3.990 16 C -0.161 4.161 17 C 0.024 3.976 18 N -0.285 5.285 19 C -0.388 4.388 20 H 0.073 0.927 21 C -0.230 4.230 22 N -0.562 5.562 23 Si 0.782 3.218 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.195 1.195 27 C -0.007 4.007 28 C -0.240 4.240 29 C -0.240 4.240 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.122 0.878 50 H 0.088 0.912 51 H 0.118 0.882 52 H 0.125 0.875 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.950 11.129 -14.403 24.872 hybrid contribution 0.027 -1.528 0.514 1.612 sum -16.923 9.602 -13.889 23.906 Atomic orbital electron populations 1.23037 0.79337 1.03890 1.01209 1.87928 1.21525 1.27153 1.95078 1.22748 0.94573 0.85426 0.96298 0.89616 1.23099 0.99095 0.85246 0.96311 1.87918 1.32629 1.30571 1.79758 1.22706 0.84228 1.03057 0.91869 1.22320 1.02794 0.95523 0.97974 1.20998 0.95475 0.98000 0.94431 0.91980 1.21659 0.93555 1.05756 0.95317 1.21269 0.92350 0.75312 0.81630 1.90648 1.38621 1.52005 1.64888 1.46053 1.09810 1.70155 1.11035 1.21072 0.85045 1.00221 0.92680 1.22082 1.00484 1.00810 0.92696 1.20764 0.94001 0.98451 0.84401 1.43577 1.82477 1.01068 1.01346 1.19030 1.16639 0.83576 1.19547 0.92725 1.25823 0.94864 1.01609 1.00747 1.70021 1.11325 1.33850 1.40968 0.85483 0.77064 0.81021 0.78191 1.21133 1.22124 1.19468 1.21401 0.99833 0.93005 0.86421 1.23084 1.01314 1.01154 0.98473 1.23307 0.91389 1.02145 1.07202 0.92647 0.92896 0.88726 0.87171 0.93040 0.93393 0.87168 0.90155 0.90160 0.86293 0.87179 0.75039 0.94171 0.92121 0.91235 0.93174 0.91723 0.95015 0.93803 0.87816 0.91206 0.88176 0.87539 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -6.68 9.75 -148.98 -1.45 -8.13 16 3 C 0.07 1.07 2.21 30.69 0.07 1.14 16 4 H 0.09 1.10 7.79 -2.38 -0.02 1.08 16 5 C 0.04 0.64 6.46 72.01 0.47 1.10 16 6 O -0.39 -7.44 10.77 -148.98 -1.60 -9.05 16 7 C 0.06 1.04 6.84 72.01 0.49 1.54 16 8 C -0.15 -2.87 5.12 30.68 0.16 -2.71 16 9 C -0.07 -1.38 1.64 -10.67 -0.02 -1.39 16 10 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 11 C -0.12 -2.23 5.12 29.85 0.15 -2.08 16 12 C 0.51 13.44 7.57 87.66 0.66 14.10 16 13 O -0.58 -20.11 13.98 -3.03 -0.04 -20.15 16 14 N -0.72 -18.52 5.56 -463.07 -2.57 -21.09 16 15 C 0.13 4.39 5.67 86.38 0.49 4.89 16 16 C -0.12 -4.29 5.65 30.59 0.17 -4.11 16 17 C 0.15 6.71 5.33 86.38 0.46 7.17 16 18 N -0.57 -27.05 2.79 -678.03 -1.89 -28.94 16 19 C -0.26 -13.57 8.07 84.03 0.68 -12.89 16 20 H 0.06 2.92 7.16 -2.91 -0.02 2.90 16 21 C -0.03 -1.79 4.97 84.86 0.42 -1.37 16 22 N -0.92 -52.85 11.40 21.65 0.25 -52.60 16 23 Si 0.95 44.07 29.61 68.60 2.03 46.10 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 C 0.10 4.11 6.61 44.99 0.30 4.40 16 28 C -0.20 -7.66 9.81 30.61 0.30 -7.36 16 29 C -0.20 -6.93 10.08 30.62 0.31 -6.63 16 30 H 0.05 0.43 8.09 -2.38 -0.02 0.41 16 31 H 0.05 0.41 7.93 -2.39 -0.02 0.39 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.36 7.93 -2.39 -0.02 1.34 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.96 6.04 -2.39 -0.01 1.94 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 1.84 7.66 -2.39 -0.02 1.82 16 41 H 0.41 8.21 8.47 -92.71 -0.79 7.42 16 42 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 3.41 5.46 -2.39 -0.01 3.39 16 47 H 0.03 1.35 8.04 -2.38 -0.02 1.33 16 48 H 0.25 14.19 8.32 -92.70 -0.77 13.42 16 49 H 0.10 3.79 8.10 -2.39 -0.02 3.77 16 50 H 0.07 3.06 6.95 -2.38 -0.02 3.05 16 51 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 52 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 53 H 0.07 2.64 7.98 -2.39 -0.02 2.62 16 Total: -1.00 -67.22 418.74 1.15 -66.08 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.10 Total: 30.54 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 6.34 Total: -2.76 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.22 Total: -102.63 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -3.10 Total: -37.33 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.22 1.15 -66.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660691779.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.950 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds