Wall clock time and date at job start Sat Apr 11 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42910 * 113.99810 * 2 1 4 4 H 1.08993 * 109.57090 * 29.84651 * 3 2 1 5 5 C 1.53093 * 109.52203 * 269.69101 * 3 2 1 6 6 O 1.42904 * 109.41422 * 297.70143 * 5 3 2 7 7 C 1.42902 * 114.09617 * 298.84444 * 6 5 3 8 8 C 1.53086 * 109.41492 * 61.15968 * 7 6 5 9 9 C 1.53171 * 109.16469 * 302.38553 * 8 7 6 10 10 H 1.08993 * 109.54713 * 297.03194 * 9 8 7 11 11 C 1.53001 * 109.54608 * 176.84677 * 9 8 7 12 12 C 1.50699 * 109.46705 * 65.00508 * 11 9 8 13 13 O 1.21285 * 120.00257 * 359.97438 * 12 11 9 14 14 N 1.34778 * 119.99785 * 180.02562 * 12 11 9 15 15 C 1.46504 * 119.99827 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47273 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47271 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.46942 * 180.02562 * 17 16 15 19 19 C 1.36933 * 119.99568 * 269.99873 * 18 17 16 20 20 H 1.08001 * 120.00070 * 140.54263 * 19 18 17 21 21 C 1.38812 * 120.00238 * 320.53220 * 19 18 17 22 22 N 1.31612 * 120.00313 * 340.28654 * 21 19 18 23 23 Si 1.86805 * 120.00072 * 160.27956 * 21 19 18 24 24 H 1.48506 * 109.47158 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47084 * 120.00371 * 23 21 19 26 26 H 1.48499 * 109.47419 * 240.00537 * 23 21 19 27 27 C 1.46500 * 120.00122 * 89.99591 * 18 17 16 28 28 C 1.53001 * 117.49623 * 183.28305 * 27 18 17 29 29 C 1.53005 * 60.00226 * 252.51451 * 28 27 18 30 30 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46863 * 299.99260 * 1 2 3 32 32 H 1.08996 * 109.47531 * 59.99793 * 1 2 3 33 33 H 1.09000 * 109.48103 * 177.71861 * 5 3 2 34 34 H 1.09002 * 109.48972 * 57.69013 * 5 3 2 35 35 H 1.09000 * 109.47920 * 301.16999 * 7 6 5 36 36 H 1.09002 * 109.48727 * 181.14800 * 7 6 5 37 37 H 1.09006 * 109.52067 * 182.48369 * 8 7 6 38 38 H 1.09003 * 109.57684 * 62.32754 * 8 7 6 39 39 H 1.08996 * 109.47603 * 305.00621 * 11 9 8 40 40 H 1.08997 * 109.47247 * 185.00091 * 11 9 8 41 41 H 0.96992 * 120.00561 * 359.97438 * 14 12 11 42 42 H 1.08999 * 109.47463 * 59.99748 * 15 14 12 43 43 H 1.09005 * 109.46952 * 299.99985 * 15 14 12 44 44 H 1.08999 * 109.46975 * 59.99580 * 16 15 14 45 45 H 1.09005 * 109.46871 * 300.00358 * 16 15 14 46 46 H 1.08993 * 109.46843 * 60.00197 * 17 16 15 47 47 H 1.08997 * 109.46912 * 299.99754 * 17 16 15 48 48 H 0.96997 * 120.00632 * 175.01277 * 22 21 19 49 49 H 1.08995 * 115.55923 * 328.98279 * 27 18 17 50 50 H 1.08993 * 117.50049 * 0.02562 * 28 27 18 51 51 H 1.09003 * 117.49514 * 145.02317 * 28 27 18 52 52 H 1.08996 * 117.50058 * 252.51448 * 29 28 27 53 53 H 1.09003 * 117.51195 * 107.48050 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 2.0014 0.5111 5 6 2.2254 1.7698 -1.4429 6 8 3.1431 0.8885 -2.0935 7 6 4.4379 0.8455 -1.4903 8 6 4.3115 0.3441 -0.0494 9 6 3.3607 1.2646 0.7218 10 1 3.7820 2.2688 0.7668 11 6 3.1664 0.7268 2.1409 12 6 4.4746 0.7920 2.8862 13 8 5.4649 1.2254 2.3363 14 7 4.5442 0.3677 4.1635 15 6 5.8159 0.4315 4.8882 16 6 5.6217 -0.1064 6.3073 17 6 6.9499 -0.0403 7.0640 18 7 6.7641 -0.5559 8.4226 19 6 6.4079 0.2947 9.4349 20 1 5.6962 -0.0234 10.1823 21 6 6.9618 1.5658 9.5006 22 7 8.0813 1.8298 8.8609 23 14 6.1181 2.9020 10.4968 24 1 4.8846 2.3536 11.1159 25 1 7.0360 3.3794 11.5621 26 1 5.7632 4.0350 9.6049 27 6 6.9592 -1.9815 8.6982 28 6 6.6756 -2.4715 10.1196 29 6 8.1178 -2.3709 9.6186 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 2.6310 2.7815 -1.4426 34 1 1.2735 1.7599 -1.9739 35 1 4.8725 1.8451 -1.4907 36 1 5.0800 0.1698 -2.0553 37 1 5.2922 0.3524 0.4265 38 1 3.9153 -0.6713 -0.0494 39 1 2.8260 -0.3076 2.0941 40 1 2.4222 1.3311 2.6597 41 1 3.7524 0.0207 4.6032 42 1 6.1556 1.4661 4.9355 43 1 6.5606 -0.1720 4.3692 44 1 5.2818 -1.1409 6.2604 45 1 4.8771 0.4975 6.8260 46 1 7.2902 0.9941 7.1109 47 1 7.6941 -0.6445 6.5451 48 1 8.4302 2.7347 8.8468 49 1 6.7208 -2.6563 7.8761 50 1 6.3434 -1.7333 10.8495 51 1 6.2504 -3.4688 10.2326 52 1 8.6414 -3.3020 9.4021 53 1 8.7349 -1.5664 10.0188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660691781.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:37 Heat of formation + Delta-G solvation = -112.695072 kcal Electronic energy + Delta-G solvation = -30155.013069 eV Core-core repulsion = 26027.163985 eV Total energy + Delta-G solvation = -4127.849084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.33371 -40.19259 -38.83858 -37.90566 -36.71787 -35.27177 -35.06521 -33.37213 -31.53778 -31.28290 -29.72370 -27.39992 -27.12263 -25.45063 -24.36510 -24.10986 -23.02432 -22.46692 -21.60884 -21.24002 -20.79296 -18.27502 -18.08745 -17.53182 -17.43772 -17.27521 -17.00628 -16.70302 -16.44858 -16.38864 -16.20941 -15.82905 -15.73913 -15.19861 -14.91317 -14.73867 -14.39805 -14.09146 -13.93098 -13.83313 -13.63562 -13.35118 -13.22105 -13.09906 -12.81088 -12.62369 -12.53850 -12.41810 -12.27207 -12.20847 -12.01417 -11.98790 -11.84973 -11.71738 -11.41534 -11.28977 -11.27827 -10.98988 -10.90820 -10.73536 -10.49064 -10.07383 -9.99136 -8.49321 -7.77927 -5.50676 1.42489 1.46746 1.55750 1.69339 2.24267 2.49143 2.75020 3.08734 3.16502 3.41559 3.51429 3.63330 3.70476 3.82039 3.90920 4.12570 4.18778 4.30608 4.32027 4.33181 4.37406 4.46928 4.48322 4.52487 4.55766 4.56506 4.57264 4.61478 4.66477 4.76277 4.78083 4.81949 4.90448 4.95392 4.96022 4.99319 5.05924 5.08259 5.13271 5.19510 5.34343 5.37530 5.47836 5.53446 5.56613 5.68710 5.82697 6.14521 6.41567 6.47494 6.62439 7.16668 7.31593 7.85026 8.37480 9.11141 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002036 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.492415 B =13750.441479 C =14145.679127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.062 3.938 4 H 0.094 0.906 5 C 0.035 3.965 6 O -0.394 6.394 7 C 0.062 3.938 8 C -0.146 4.146 9 C -0.070 4.070 10 H 0.083 0.917 11 C -0.121 4.121 12 C 0.505 3.495 13 O -0.581 6.581 14 N -0.719 5.719 15 C 0.134 3.866 16 C -0.121 4.121 17 C 0.154 3.846 18 N -0.569 5.569 19 C -0.257 4.257 20 H 0.060 0.940 21 C -0.035 4.035 22 N -0.915 5.915 23 Si 0.951 3.049 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.288 1.288 27 C 0.103 3.897 28 C -0.179 4.179 29 C -0.223 4.223 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.414 0.586 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.250 0.750 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.112 0.888 52 H 0.100 0.900 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -3.230 -18.421 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.004 3.996 4 H 0.112 0.888 5 C -0.042 4.042 6 O -0.313 6.313 7 C -0.015 4.015 8 C -0.184 4.184 9 C -0.089 4.089 10 H 0.101 0.899 11 C -0.160 4.160 12 C 0.293 3.707 13 O -0.462 6.462 14 N -0.371 5.371 15 C 0.009 3.991 16 C -0.161 4.161 17 C 0.028 3.972 18 N -0.286 5.286 19 C -0.387 4.387 20 H 0.077 0.923 21 C -0.233 4.233 22 N -0.559 5.559 23 Si 0.779 3.221 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.215 1.215 27 C -0.005 4.005 28 C -0.217 4.217 29 C -0.264 4.264 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.250 0.750 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.131 0.869 50 H 0.092 0.908 51 H 0.130 0.870 52 H 0.118 0.882 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.819 -3.058 -18.920 24.850 hybrid contribution -0.085 1.197 1.269 1.747 sum -15.904 -1.860 -17.650 23.831 Atomic orbital electron populations 1.22970 0.79978 1.03583 1.00786 1.87964 1.20785 1.27174 1.95040 1.22843 0.94573 0.86113 0.96077 0.88804 1.23244 0.94463 0.93267 0.93255 1.87905 1.22868 1.66160 1.54394 1.22611 0.84521 1.01016 0.93317 1.22172 1.00585 0.99602 0.95993 1.21043 0.94451 1.00246 0.93111 0.89866 1.21627 0.93896 1.05593 0.94931 1.21323 0.91562 0.76167 0.81603 1.90651 1.39609 1.47637 1.68278 1.46051 1.13102 1.64775 1.13145 1.21067 0.85927 1.00046 0.92020 1.22082 1.00484 1.00875 0.92702 1.20656 0.93276 1.00107 0.83172 1.43572 1.78484 1.02139 1.04450 1.19204 1.17415 0.95358 1.06721 0.92286 1.25905 0.95123 1.02080 1.00155 1.70191 1.18870 1.19502 1.47294 0.85476 0.78549 0.79757 0.78277 1.18859 1.22297 1.21473 1.21562 0.99827 0.86603 0.92546 1.23019 0.98539 1.01681 0.98507 1.23264 0.91953 1.01615 1.09571 0.89149 0.92720 0.93420 0.91233 0.87532 0.92896 0.88458 0.91010 0.91753 0.87117 0.86597 0.75004 0.93943 0.92486 0.91208 0.92628 0.92244 0.95337 0.94115 0.86885 0.90768 0.87016 0.88199 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.39 -6.43 9.07 -141.82 -1.29 -7.72 16 3 C 0.06 0.89 2.43 30.69 0.07 0.97 16 4 H 0.09 0.90 7.79 -2.39 -0.02 0.88 16 5 C 0.03 0.52 6.49 72.01 0.47 0.98 16 6 O -0.39 -8.35 10.70 -141.82 -1.52 -9.86 16 7 C 0.06 1.23 6.84 72.01 0.49 1.73 16 8 C -0.15 -3.19 4.96 30.68 0.15 -3.04 16 9 C -0.07 -1.29 1.76 -10.68 -0.02 -1.31 16 10 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 11 C -0.12 -2.10 4.94 29.85 0.15 -1.95 16 12 C 0.51 13.04 7.57 87.66 0.66 13.70 16 13 O -0.58 -19.70 13.98 -3.04 -0.04 -19.74 16 14 N -0.72 -17.99 5.56 -463.04 -2.57 -20.56 16 15 C 0.13 4.29 5.67 86.38 0.49 4.78 16 16 C -0.12 -4.20 5.65 30.59 0.17 -4.03 16 17 C 0.15 6.86 5.33 86.38 0.46 7.32 16 18 N -0.57 -27.02 2.75 -678.03 -1.86 -28.88 16 19 C -0.26 -13.43 8.47 84.03 0.71 -12.72 16 20 H 0.06 3.10 6.74 -2.91 -0.02 3.08 16 21 C -0.03 -1.89 4.98 84.86 0.42 -1.47 16 22 N -0.92 -52.84 11.50 21.65 0.25 -52.59 16 23 Si 0.95 43.62 29.60 68.60 2.03 45.65 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 27 C 0.10 4.15 6.56 44.99 0.30 4.44 16 28 C -0.18 -6.64 9.80 30.60 0.30 -6.34 16 29 C -0.22 -8.87 10.36 30.60 0.32 -8.56 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.40 8.09 -2.38 -0.02 0.38 16 32 H 0.05 0.39 7.86 -2.39 -0.02 0.37 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.25 7.86 -2.39 -0.02 1.23 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.91 6.03 -2.38 -0.01 1.89 16 38 H 0.06 1.49 7.83 -2.39 -0.02 1.48 16 39 H 0.11 1.77 7.76 -2.39 -0.02 1.75 16 40 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.41 7.88 8.47 -92.71 -0.79 7.09 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.06 3.11 5.59 -2.39 -0.01 3.10 16 47 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 48 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 49 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 50 H 0.07 3.09 6.46 -2.39 -0.02 3.08 16 51 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 52 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 53 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -68.82 417.80 1.47 -67.35 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.10 Total: 30.37 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 6.38 Total: -4.01 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -4.19 Total: -102.03 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -2.85 Total: -37.32 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.82 1.47 -67.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660691781.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.349 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds