Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99898 * 2 1 4 4 H 1.08998 * 109.47566 * 25.12663 * 3 2 1 5 5 C 1.50707 * 109.47009 * 145.12537 * 3 2 1 6 6 O 1.21280 * 119.99705 * 36.32083 * 5 3 2 7 7 N 1.34772 * 119.99945 * 216.31813 * 5 3 2 8 8 C 1.46925 * 120.63034 * 5.01772 * 7 5 3 9 9 C 1.52770 * 109.00610 * 233.58172 * 8 7 5 10 10 C 1.53029 * 109.38547 * 305.59069 * 9 8 7 11 11 C 1.53004 * 109.46136 * 181.26131 * 10 9 8 12 12 C 1.52995 * 109.46989 * 64.92851 * 11 10 9 13 13 N 1.46504 * 109.46968 * 180.02562 * 12 11 10 14 14 C 1.36938 * 119.99852 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00344 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99794 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00349 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47128 * 59.99740 * 18 16 14 20 20 H 1.48502 * 109.47232 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47230 * 300.00138 * 18 16 14 22 22 C 1.53038 * 109.54260 * 61.23852 * 10 9 8 23 23 C 1.46924 * 120.63278 * 185.29789 * 7 5 3 24 24 C 1.53004 * 109.46992 * 265.12466 * 3 2 1 25 25 H 1.08990 * 110.45620 * 52.10613 * 24 3 2 26 26 C 1.54508 * 110.50882 * 174.71147 * 24 3 2 27 27 C 1.54478 * 104.06543 * 118.64303 * 26 24 3 28 28 O 1.44425 * 104.80002 * 23.97930 * 27 26 24 29 29 C 1.44427 * 105.27645 * 319.48512 * 28 27 26 30 30 H 1.09003 * 109.47099 * 184.98948 * 1 2 3 31 31 H 1.09002 * 109.46859 * 304.98602 * 1 2 3 32 32 H 1.08998 * 109.47248 * 64.99120 * 1 2 3 33 33 H 1.09000 * 109.58625 * 353.41658 * 8 7 5 34 34 H 1.09000 * 109.58668 * 113.84944 * 8 7 5 35 35 H 1.09008 * 109.56135 * 185.54990 * 9 8 7 36 36 H 1.09002 * 109.38005 * 65.52063 * 9 8 7 37 37 H 1.08999 * 109.44808 * 301.22360 * 10 9 8 38 38 H 1.08998 * 109.47282 * 184.93171 * 11 10 9 39 39 H 1.08998 * 109.46867 * 304.92891 * 11 10 9 40 40 H 1.08998 * 109.47370 * 300.00266 * 12 11 10 41 41 H 1.08998 * 109.47284 * 60.00295 * 12 11 10 42 42 H 0.96992 * 120.00001 * 0.02562 * 13 12 11 43 43 H 0.96994 * 120.00208 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.50421 * 178.68063 * 22 10 9 45 45 H 1.09003 * 109.49456 * 58.58678 * 22 10 9 46 46 H 1.09000 * 109.58754 * 246.15961 * 23 7 5 47 47 H 1.09006 * 109.58625 * 6.43823 * 23 7 5 48 48 H 1.08998 * 110.51061 * 237.29151 * 26 24 3 49 49 H 1.09005 * 110.51093 * 359.86106 * 26 24 3 50 50 H 1.08997 * 110.37238 * 142.80461 * 27 26 24 51 51 H 1.08998 * 110.37464 * 265.14847 * 27 26 24 52 52 H 1.08993 * 110.37408 * 281.68278 * 29 28 27 53 53 H 1.08995 * 110.37114 * 159.34344 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3080 2.0158 0.4363 5 6 3.2794 1.2902 0.8124 6 8 4.0019 0.3164 0.7902 7 7 3.6115 2.3588 1.5636 8 6 2.6951 3.5005 1.6877 9 6 3.4416 4.7804 1.3156 10 6 4.7083 4.8953 2.1666 11 6 5.4410 6.1923 1.8176 12 6 4.5751 7.3897 2.2140 13 7 5.2765 8.6316 1.8792 14 6 4.6918 9.8411 2.1450 15 1 3.7136 9.8795 2.6010 16 6 5.3561 11.0179 1.8274 17 7 6.5481 10.9711 1.2712 18 14 4.5583 12.6677 2.1892 19 1 4.3003 12.7837 3.6471 20 1 5.4661 13.7614 1.7591 21 1 3.2746 12.7696 1.4498 22 6 5.6236 3.7013 1.8859 23 6 4.8994 2.4068 2.2690 24 6 2.3296 1.7215 -1.4373 25 1 1.4513 1.6042 -2.0719 26 6 2.8365 3.1805 -1.4786 27 6 4.2669 3.0649 -2.0504 28 8 4.2674 1.8280 -2.7959 29 6 3.5138 0.8970 -1.9890 30 1 -0.3633 -1.0238 0.0894 31 1 -0.3633 0.5893 0.8420 32 1 -0.3634 0.4344 -0.9313 33 1 1.8484 3.3643 1.0149 34 1 2.3398 3.5738 2.7156 35 1 2.8008 5.6430 1.4986 36 1 3.7138 4.7467 0.2607 37 1 4.4368 4.9044 3.2222 38 1 6.3864 6.2325 2.3587 39 1 5.6346 6.2230 0.7453 40 1 3.6298 7.3495 1.6729 41 1 4.3816 7.3590 3.2862 42 1 6.1549 8.5972 1.4694 43 1 7.0124 11.7933 1.0495 44 1 6.5359 3.7958 2.4748 45 1 5.8753 3.6772 0.8257 46 1 4.7275 2.3890 3.3452 47 1 5.5057 1.5477 1.9817 48 1 2.2101 3.7839 -2.1356 49 1 2.8571 3.6062 -0.4753 50 1 4.4808 3.9057 -2.7102 51 1 4.9964 3.0208 -1.2417 52 1 4.1277 0.5204 -1.1709 53 1 3.1492 0.0725 -2.6016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666231077.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -128.626790 kcal Electronic energy + Delta-G solvation = -31984.293722 eV Core-core repulsion = 27855.753787 eV Total energy + Delta-G solvation = -4128.539935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21529 -40.04521 -39.20894 -38.38174 -36.90487 -35.15002 -34.14296 -32.95838 -32.09882 -30.74155 -29.88269 -28.42088 -27.03718 -26.21008 -24.66326 -24.32552 -23.80956 -22.89385 -22.04573 -20.97211 -20.02066 -19.12752 -18.65378 -18.29049 -17.42785 -17.10426 -16.76006 -16.57486 -16.22551 -15.97024 -15.74645 -15.61518 -15.55242 -15.40279 -15.29332 -14.96598 -14.75049 -14.37607 -14.21797 -14.03397 -13.85299 -13.36237 -13.21276 -13.03172 -12.95573 -12.79933 -12.52975 -12.47544 -12.34410 -12.26741 -12.20796 -12.12049 -12.04068 -11.90602 -11.83184 -11.54138 -11.39331 -11.16498 -11.01902 -10.85123 -10.74960 -10.39090 -9.70090 -8.96142 -7.93316 -5.21860 1.38034 1.48615 1.51571 1.57750 1.69951 2.57929 2.74402 2.96520 3.29319 3.40612 3.41721 3.64694 3.68844 3.75877 3.77963 3.85436 3.93650 4.07533 4.11313 4.23613 4.29054 4.33622 4.36057 4.41129 4.47511 4.52328 4.57641 4.60189 4.61061 4.65180 4.75537 4.78139 4.81476 4.85516 4.87758 4.90038 4.97116 4.98795 5.01820 5.06882 5.12192 5.23604 5.33093 5.40607 5.51289 5.54653 5.60027 5.74687 5.97362 6.29555 6.30287 7.03093 7.35157 8.14080 8.34793 9.30423 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.002458 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.887526 B =11389.886654 C =11590.944367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.388 6.388 3 C 0.080 3.920 4 H 0.119 0.881 5 C 0.513 3.487 6 O -0.563 6.563 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.141 4.141 10 C -0.071 4.071 11 C -0.109 4.109 12 C 0.151 3.849 13 N -0.751 5.751 14 C -0.244 4.244 15 H 0.078 0.922 16 C -0.079 4.079 17 N -0.972 5.972 18 Si 0.973 3.027 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.275 1.275 22 C -0.122 4.122 23 C 0.114 3.886 24 C -0.126 4.126 25 H 0.117 0.883 26 C -0.169 4.169 27 C 0.039 3.961 28 O -0.398 6.398 29 C 0.033 3.967 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.018 0.982 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.100 0.900 51 H 0.047 0.953 52 H 0.064 0.936 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 -22.034 -1.408 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.306 6.306 3 C 0.019 3.981 4 H 0.137 0.863 5 C 0.301 3.699 6 O -0.442 6.442 7 N -0.335 5.335 8 C -0.026 4.026 9 C -0.178 4.178 10 C -0.090 4.090 11 C -0.147 4.147 12 C 0.026 3.974 13 N -0.394 5.394 14 C -0.376 4.376 15 H 0.096 0.904 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.802 3.198 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.201 1.201 22 C -0.160 4.160 23 C -0.008 4.008 24 C -0.145 4.145 25 H 0.135 0.865 26 C -0.206 4.206 27 C -0.037 4.037 28 O -0.317 6.317 29 C -0.043 4.043 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.118 0.882 51 H 0.065 0.935 52 H 0.082 0.918 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.145 -22.667 -1.546 26.763 hybrid contribution 0.338 1.265 0.058 1.311 sum -13.807 -21.402 -1.488 25.513 Atomic orbital electron populations 1.23197 0.78353 1.04474 1.01798 1.88018 1.22159 1.25492 1.94964 1.22208 0.93757 0.87551 0.94564 0.86350 1.20788 0.87804 0.82306 0.78998 1.90645 1.54257 1.34380 1.64903 1.48230 1.19617 1.18027 1.47635 1.22132 0.92145 0.84032 1.04327 1.22180 0.97323 0.97793 1.00530 1.20976 0.94875 0.92466 1.00732 1.21630 0.98559 0.93719 1.00789 1.20901 0.94878 0.84856 0.96811 1.42671 1.20634 1.01650 1.74396 1.19632 1.00574 0.85208 1.32149 0.90418 1.25593 0.97575 1.01430 1.02507 1.69813 1.15305 1.27281 1.49947 0.85216 0.77341 0.79237 0.78020 1.20366 1.22413 1.20125 1.21918 0.98855 0.93386 1.01888 1.21631 0.83827 0.98295 0.97065 1.22888 1.00768 0.95426 0.95440 0.86494 1.23485 0.96430 0.95745 1.04912 1.23490 0.97011 0.87390 0.95847 1.89090 1.75358 1.22763 1.44502 1.23777 0.92070 0.92899 0.95592 0.88325 0.92074 0.92082 0.87547 0.88552 0.89037 0.90994 0.89819 0.92801 0.92809 0.95103 0.96442 0.79743 0.94080 0.89877 0.92560 0.89619 0.90724 0.87996 0.87632 0.88156 0.93517 0.91795 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.87 113.37 1.23 1.40 16 2 O -0.39 -7.21 10.04 -133.08 -1.34 -8.54 16 3 C 0.08 1.29 1.97 29.85 0.06 1.35 16 4 H 0.12 1.11 5.16 -2.39 -0.01 1.09 16 5 C 0.51 11.24 5.61 87.66 0.49 11.73 16 6 O -0.56 -17.24 14.13 12.87 0.18 -17.06 16 7 N -0.60 -10.45 2.83 -819.71 -2.32 -12.77 16 8 C 0.09 1.13 5.22 86.22 0.45 1.57 16 9 C -0.14 -2.22 4.71 30.53 0.14 -2.07 16 10 C -0.07 -1.38 2.15 -10.77 -0.02 -1.40 16 11 C -0.11 -3.06 4.80 30.59 0.15 -2.91 16 12 C 0.15 5.46 6.02 86.38 0.52 5.98 16 13 N -0.75 -37.20 5.60 -343.46 -1.92 -39.13 16 14 C -0.24 -13.32 9.99 84.03 0.84 -12.49 16 15 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 17 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 18 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.12 -2.27 5.36 30.67 0.16 -2.11 16 23 C 0.11 2.07 6.42 86.36 0.55 2.63 16 24 C -0.13 -2.05 3.20 -9.78 -0.03 -2.08 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 26 C -0.17 -2.57 6.15 31.61 0.19 -2.38 16 27 C 0.04 0.83 7.63 72.48 0.55 1.38 16 28 O -0.40 -10.46 11.65 -148.98 -1.74 -12.19 16 29 C 0.03 0.77 6.92 72.49 0.50 1.27 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.38 7.98 -2.39 -0.02 0.36 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.11 0.81 4.38 -2.39 -0.01 0.80 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.46 6.50 -2.38 -0.02 1.45 16 36 H 0.07 1.22 6.03 -2.39 -0.01 1.20 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.06 6.53 -2.39 -0.02 1.04 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.37 19.83 7.67 -92.71 -0.71 19.12 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.65 7.04 -2.38 -0.02 1.64 16 48 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.11 1.43 1.68 -2.38 0.00 1.43 16 50 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.05 1.08 7.92 -2.39 -0.02 1.06 16 52 H 0.06 1.84 4.86 -2.39 -0.01 1.83 16 53 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.92 396.35 1.64 -73.28 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.21 Total: 30.34 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.26 Total: -2.15 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -3.96 Total: -110.97 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -2.89 Total: -37.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.92 1.64 -73.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666231077.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.344 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds