Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99699 * 2 1 4 4 C 1.53001 * 109.46662 * 120.57636 * 3 2 1 5 5 C 1.50706 * 109.54243 * 294.14587 * 4 3 2 6 6 O 1.21283 * 119.99455 * 113.61520 * 5 4 3 7 7 N 1.34775 * 120.00214 * 293.61560 * 5 4 3 8 8 C 1.46502 * 119.99841 * 353.82050 * 7 5 4 9 9 C 1.46498 * 120.00106 * 173.82479 * 7 5 4 10 10 C 1.52998 * 109.46962 * 269.99647 * 9 7 5 11 11 H 1.08998 * 109.47094 * 59.99721 * 10 9 7 12 12 O 1.42900 * 109.47469 * 300.00153 * 10 9 7 13 13 C 1.53001 * 109.47021 * 180.02562 * 10 9 7 14 14 N 1.46509 * 109.46724 * 185.00205 * 13 10 9 15 15 C 1.46495 * 120.00087 * 90.00173 * 14 13 10 16 16 C 1.36938 * 119.99743 * 270.27196 * 14 13 10 17 17 H 1.08002 * 119.99918 * 26.35743 * 16 14 13 18 18 C 1.38812 * 119.99972 * 206.35712 * 16 14 13 19 19 N 1.31623 * 119.99794 * 9.69000 * 18 16 14 20 20 Si 1.86797 * 120.00271 * 189.68753 * 18 16 14 21 21 H 1.48499 * 109.46792 * 89.99829 * 20 18 16 22 22 H 1.48494 * 109.47315 * 210.00124 * 20 18 16 23 23 H 1.48503 * 109.46965 * 330.00215 * 20 18 16 24 24 C 1.53172 * 109.54635 * 54.32263 * 4 3 2 25 25 C 1.53281 * 109.06584 * 176.84803 * 24 4 3 26 26 O 1.42897 * 109.46327 * 302.45202 * 25 24 4 27 27 C 1.42904 * 114.09905 * 61.15117 * 26 25 24 28 28 C 1.53090 * 109.41634 * 298.84601 * 27 26 25 29 29 H 1.07997 * 119.99533 * 185.11882 * 1 2 3 30 30 H 1.07990 * 119.99917 * 5.12655 * 1 2 3 31 31 H 1.07995 * 120.00171 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47285 * 0.57986 * 3 2 1 33 33 H 1.08995 * 109.47291 * 240.57382 * 3 2 1 34 34 H 1.08999 * 109.47152 * 269.18813 * 8 7 5 35 35 H 1.08998 * 109.47226 * 29.18908 * 8 7 5 36 36 H 1.08998 * 109.47118 * 149.18543 * 8 7 5 37 37 H 1.08997 * 109.46981 * 149.99826 * 9 7 5 38 38 H 1.09000 * 109.46983 * 29.99575 * 9 7 5 39 39 H 0.96701 * 113.99507 * 300.00209 * 12 10 9 40 40 H 1.08994 * 109.47122 * 65.00577 * 13 10 9 41 41 H 1.08998 * 109.46749 * 304.99790 * 13 10 9 42 42 H 1.09001 * 109.47336 * 86.27008 * 15 14 13 43 43 H 1.08993 * 109.47279 * 206.27262 * 15 14 13 44 44 H 1.09003 * 109.47161 * 326.27638 * 15 14 13 45 45 H 0.97004 * 119.99775 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.52861 * 296.84452 * 24 4 3 47 47 H 1.09004 * 109.51931 * 57.03013 * 24 4 3 48 48 H 1.09000 * 109.46151 * 182.45077 * 25 24 4 49 49 H 1.09005 * 109.46366 * 62.45241 * 25 24 4 50 50 H 1.09003 * 109.48254 * 178.85887 * 27 26 25 51 51 H 1.09001 * 109.48852 * 58.83586 * 27 26 25 52 52 H 1.08997 * 109.51765 * 297.70092 * 28 27 26 53 53 H 1.09002 * 109.57419 * 177.54520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9539 1.3799 1.2420 5 6 2.0924 1.4387 2.4771 6 8 2.0996 0.5174 3.2658 7 7 1.3141 2.5151 2.7053 8 6 1.4054 3.6843 1.8272 9 6 0.3770 2.5160 3.8313 10 6 -0.9716 1.9574 3.3728 11 1 -0.8386 0.9377 3.0116 12 8 -1.4914 2.7717 2.3199 13 6 -1.9505 1.9589 4.5487 14 7 -3.2023 1.3150 4.1427 15 6 -3.3741 -0.1290 4.3192 16 6 -4.2097 2.0623 3.5930 17 1 -3.9789 2.9795 3.0717 18 6 -5.5274 1.6407 3.7059 19 7 -5.8307 0.6336 4.4972 20 14 -6.8703 2.5028 2.7349 21 1 -7.0316 1.8389 1.4164 22 1 -8.1492 2.4292 3.4860 23 1 -6.4975 3.9257 2.5304 24 6 3.8532 0.1415 1.3030 25 6 4.7947 0.2652 2.5063 26 8 5.5588 1.4671 2.3914 27 6 4.7717 2.6598 2.3764 28 6 3.8311 2.6335 1.1689 29 1 -0.5399 -0.9316 0.0835 30 1 -0.5399 0.9315 -0.0836 31 1 1.8501 -0.9352 -0.0004 32 1 1.3552 2.1336 0.0104 33 1 2.6824 1.3674 -0.8950 34 1 2.1460 4.3792 2.2232 35 1 1.7033 3.3661 0.8282 36 1 0.4347 4.1776 1.7770 37 1 0.2440 3.5358 4.1925 38 1 0.7735 1.8948 4.6344 39 1 -1.6351 3.6945 2.5707 40 1 -2.1521 2.9862 4.8522 41 1 -1.5149 1.4117 5.3847 42 1 -3.7415 -0.3310 5.3254 43 1 -4.0921 -0.5015 3.5887 44 1 -2.4164 -0.6292 4.1751 45 1 -6.7516 0.3393 4.5764 46 1 3.2371 -0.7513 1.4101 47 1 4.4404 0.0722 0.3873 48 1 5.4672 -0.5922 2.5309 49 1 4.2083 0.2936 3.4248 50 1 5.4278 3.5275 2.3073 51 1 4.1850 2.7199 3.2930 52 1 4.4178 2.6145 0.2505 53 1 3.1989 3.5215 1.1790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677178222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -88.607889 kcal Electronic energy + Delta-G solvation = -32904.192902 eV Core-core repulsion = 28777.388317 eV Total energy + Delta-G solvation = -4126.804585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30838 -39.61792 -38.62287 -37.14848 -36.83390 -35.91145 -33.85621 -33.31050 -32.11105 -31.01188 -28.74702 -28.23479 -27.87221 -27.10317 -24.86415 -24.41617 -23.73934 -22.32552 -22.06567 -20.73007 -19.80488 -18.79053 -17.68777 -17.50231 -17.23402 -17.01236 -16.96900 -16.77157 -16.39560 -16.20730 -15.76458 -15.53016 -15.31288 -15.16241 -15.04961 -14.79522 -14.55155 -14.20332 -14.03224 -13.72497 -13.59635 -13.44391 -13.14560 -13.09248 -12.82692 -12.79739 -12.55891 -12.50373 -12.41458 -12.32339 -12.27509 -12.09796 -12.03865 -11.86292 -11.81141 -11.47432 -11.28545 -11.16399 -10.61825 -10.49384 -10.47319 -10.13313 -9.51626 -8.62453 -7.80404 -5.29454 1.33355 1.46617 1.49225 1.57094 1.64243 2.06518 2.53320 2.94602 3.34573 3.37582 3.49702 3.56646 3.75235 3.77415 3.93023 4.00940 4.08305 4.10810 4.16406 4.20353 4.32629 4.34598 4.49564 4.50691 4.54517 4.63187 4.64924 4.65538 4.74385 4.77567 4.79250 4.81230 4.83176 4.88533 4.92882 5.00387 5.03035 5.11155 5.15429 5.18390 5.23428 5.34522 5.56766 5.57319 5.71047 5.71953 5.82144 6.23049 6.38564 6.45095 7.02991 7.18696 7.22411 7.87586 8.35950 9.25721 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.003058 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.984382 B = 9154.675570 C = 9265.282366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C -0.081 4.081 4 C -0.066 4.066 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.600 5.600 8 C 0.052 3.948 9 C 0.091 3.909 10 C 0.099 3.901 11 H 0.050 0.950 12 O -0.553 6.553 13 C 0.121 3.879 14 N -0.610 5.610 15 C 0.180 3.820 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.970 3.030 21 H -0.293 1.293 22 H -0.299 1.299 23 H -0.261 1.261 24 C -0.127 4.127 25 C 0.053 3.947 26 O -0.396 6.396 27 C 0.054 3.946 28 C -0.166 4.166 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.375 0.625 40 H 0.064 0.936 41 H 0.044 0.956 42 H -0.004 1.004 43 H 0.025 0.975 44 H 0.009 0.991 45 H 0.245 0.755 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.042 0.958 50 H 0.120 0.880 51 H 0.029 0.971 52 H 0.103 0.897 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.484 8.597 -9.688 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.177 4.177 3 C -0.118 4.118 4 C -0.069 4.069 5 C 0.309 3.691 6 O -0.461 6.461 7 N -0.331 5.331 8 C -0.089 4.089 9 C -0.033 4.033 10 C 0.036 3.964 11 H 0.069 0.931 12 O -0.359 6.359 13 C -0.006 4.006 14 N -0.332 5.332 15 C 0.035 3.965 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.799 3.201 21 H -0.221 1.221 22 H -0.226 1.226 23 H -0.185 1.185 24 C -0.165 4.165 25 C -0.023 4.023 26 O -0.316 6.316 27 C -0.022 4.022 28 C -0.203 4.203 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.223 0.777 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.015 0.985 43 H 0.044 0.956 44 H 0.027 0.973 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.060 0.940 50 H 0.138 0.862 51 H 0.048 0.952 52 H 0.122 0.878 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.561 7.526 -9.564 26.519 hybrid contribution -1.825 -0.113 0.424 1.877 sum 21.737 7.413 -9.140 24.718 Atomic orbital electron populations 1.23829 0.96576 1.01536 1.00909 1.23003 0.95434 0.99325 0.99976 1.20987 0.98352 0.95648 0.96810 1.20810 0.94853 0.98743 0.92498 1.20983 0.79756 0.81229 0.87141 1.90641 1.67924 1.38512 1.49053 1.47683 1.38295 1.16921 1.30209 1.22688 1.04051 0.87151 0.94977 1.22089 0.88711 1.03342 0.89139 1.22615 0.91187 0.93445 0.89165 0.93148 1.86593 1.86919 1.24405 1.37962 1.21542 0.86594 0.97776 0.94647 1.43927 1.13636 1.03341 1.72308 1.20432 0.94498 0.83907 0.97708 1.19560 0.85633 1.05637 1.26053 0.90242 1.25914 0.99774 0.99971 1.00048 1.70230 1.17500 1.31020 1.40854 0.85213 0.78484 0.78983 0.77446 1.22065 1.22614 1.18488 1.22079 0.97330 0.96982 1.00077 1.22738 0.94502 0.87597 0.97491 1.87873 1.34472 1.14620 1.94589 1.22729 0.94760 0.88221 0.96484 1.22975 0.98746 0.97627 1.00971 0.89853 0.89108 0.87050 0.89571 0.87155 0.89919 0.88374 0.89836 0.87300 0.91065 0.77704 0.91745 0.93765 0.98548 0.95649 0.97289 0.94605 0.91424 0.88497 0.88095 0.94012 0.86216 0.95234 0.87812 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.37 14.32 67.78 0.97 -4.40 16 2 C -0.16 -3.67 8.12 25.64 0.21 -3.46 16 3 C -0.08 -1.37 4.45 29.85 0.13 -1.23 16 4 C -0.07 -1.21 0.28 -52.81 -0.01 -1.22 16 5 C 0.52 13.36 4.50 87.66 0.39 13.75 16 6 O -0.58 -20.18 13.66 -3.04 -0.04 -20.22 16 7 N -0.60 -13.17 2.80 -846.76 -2.37 -15.53 16 8 C 0.05 0.69 8.06 127.77 1.03 1.72 16 9 C 0.09 2.31 5.15 86.38 0.45 2.76 16 10 C 0.10 3.30 3.48 30.59 0.11 3.41 16 11 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 12 O -0.55 -17.65 11.19 -148.98 -1.67 -19.32 16 13 C 0.12 4.77 5.37 86.38 0.46 5.23 16 14 N -0.61 -31.05 2.89 -726.94 -2.10 -33.15 16 15 C 0.18 9.60 8.99 127.77 1.15 10.74 16 16 C -0.24 -12.93 9.20 84.03 0.77 -12.16 16 17 H 0.08 4.05 7.46 -2.91 -0.02 4.03 16 18 C -0.06 -3.60 5.10 84.86 0.43 -3.16 16 19 N -0.95 -57.85 10.81 21.65 0.23 -57.61 16 20 Si 0.97 45.61 29.56 68.60 2.03 47.64 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.13 -2.50 4.09 30.75 0.13 -2.37 16 25 C 0.05 1.18 6.56 72.08 0.47 1.65 16 26 O -0.40 -8.46 10.77 -148.98 -1.60 -10.07 16 27 C 0.05 0.87 6.62 72.01 0.48 1.35 16 28 C -0.17 -2.03 4.48 30.68 0.14 -1.90 16 29 H 0.08 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.09 2.71 7.84 -2.92 -0.02 2.68 16 31 H 0.11 2.45 6.95 -2.91 -0.02 2.43 16 32 H 0.09 1.43 5.07 -2.39 -0.01 1.42 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 0.67 7.31 -2.39 -0.02 0.65 16 35 H 0.10 1.08 3.14 -2.39 -0.01 1.07 16 36 H 0.08 1.06 6.87 -2.39 -0.02 1.04 16 37 H 0.11 2.04 8.07 -2.39 -0.02 2.02 16 38 H 0.07 2.09 7.35 -2.39 -0.02 2.07 16 39 H 0.38 9.18 8.79 -74.06 -0.65 8.53 16 40 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 41 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 42 H 0.00 -0.21 7.78 -2.39 -0.02 -0.23 16 43 H 0.02 1.46 6.88 -2.39 -0.02 1.44 16 44 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16 45 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.07 1.57 6.45 -2.39 -0.02 1.56 16 47 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.04 1.17 6.05 -2.38 -0.01 1.16 16 50 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.03 0.58 7.38 -2.39 -0.02 0.56 16 52 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.12 0.99 3.55 -2.39 -0.01 0.98 16 Total: -1.00 -75.94 398.16 2.04 -73.90 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.25 Total: 23.67 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 7.30 Total: 10.69 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.24 Total: -106.30 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -3.31 Total: -49.60 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.94 2.04 -73.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677178222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.706 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds