Wall clock time and date at job start Sat Apr 11 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00091 * 2 1 4 4 O 1.20820 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99855 * 180.02562 * 3 2 1 6 6 C 1.52998 * 112.90758 * 305.38438 * 5 3 2 7 7 C 1.53000 * 109.47160 * 293.24995 * 6 5 3 8 8 C 1.52998 * 109.47194 * 177.93635 * 7 6 5 9 9 C 1.53002 * 109.46829 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47147 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00571 * 180.02562 * 10 9 8 12 12 O 1.21590 * 119.99430 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00215 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99920 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47066 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47103 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47147 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00424 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99701 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00323 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99721 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47126 * 90.00018 * 21 19 17 23 23 H 1.48502 * 109.47063 * 210.00342 * 21 19 17 24 24 H 1.48504 * 109.46783 * 329.99996 * 21 19 17 25 25 C 1.53775 * 113.61477 * 174.13086 * 5 3 2 26 26 C 1.53776 * 87.08714 * 220.01799 * 25 5 3 27 27 C 1.53783 * 87.07916 * 25.43022 * 26 25 5 28 28 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46633 * 299.99554 * 1 2 3 30 30 H 1.08996 * 109.47232 * 59.99889 * 1 2 3 31 31 H 1.08996 * 109.47499 * 53.25070 * 6 5 3 32 32 H 1.09004 * 109.47266 * 173.25729 * 6 5 3 33 33 H 1.09005 * 109.47473 * 297.93831 * 7 6 5 34 34 H 1.09000 * 109.47164 * 57.93957 * 7 6 5 35 35 H 1.08996 * 109.47605 * 300.00216 * 8 7 6 36 36 H 1.08996 * 109.47152 * 60.00463 * 8 7 6 37 37 H 1.08991 * 109.47741 * 299.99978 * 9 8 7 38 38 H 1.09000 * 109.47322 * 60.00449 * 9 8 7 39 39 H 0.97004 * 119.99854 * 0.02562 * 10 9 8 40 40 H 0.96996 * 119.99931 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.46745 * 300.00355 * 14 13 11 42 42 H 1.08994 * 109.46872 * 59.99676 * 14 13 11 43 43 H 1.09002 * 109.47512 * 299.99742 * 15 14 13 44 44 H 1.08994 * 109.47656 * 60.00013 * 15 14 13 45 45 H 1.08998 * 109.47369 * 299.99827 * 16 15 14 46 46 H 1.09006 * 109.47040 * 59.99838 * 16 15 14 47 47 H 0.96996 * 119.99687 * 180.02562 * 20 19 17 48 48 H 1.09004 * 113.61737 * 105.47085 * 25 5 3 49 49 H 1.09003 * 113.61858 * 334.56823 * 25 5 3 50 50 H 1.09001 * 113.61856 * 139.97644 * 26 25 5 51 51 H 1.09000 * 113.61696 * 270.88493 * 26 25 5 52 52 H 1.09008 * 113.61034 * 89.11589 * 27 26 25 53 53 H 1.08995 * 113.61727 * 219.93169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.2042 0.4907 1.1480 7 6 3.8436 1.1526 2.4794 8 6 4.4385 0.3395 3.6309 9 6 4.0784 1.0019 4.9623 10 7 4.6485 0.2236 6.0648 11 6 4.4585 0.6204 7.3388 12 8 3.8141 1.6246 7.5729 13 7 4.9834 -0.0952 8.3529 14 6 4.7772 0.3365 9.7377 15 6 5.4719 -0.6428 10.6859 16 6 5.2571 -0.1916 12.1320 17 6 5.9409 -1.1565 13.0661 18 1 6.4756 -2.0063 12.6682 19 6 5.8848 -0.9537 14.4288 20 7 5.2341 0.0813 14.9134 21 14 6.7330 -2.1494 15.5866 22 1 8.1276 -1.7000 15.8276 23 1 5.9979 -2.1955 16.8761 24 1 6.7475 -3.5032 14.9765 25 6 4.1081 2.7067 -0.1446 26 6 5.1862 2.1216 -1.0720 27 6 4.1981 0.9820 -1.3717 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.8324 -0.5338 1.1392 32 1 5.2874 0.4852 1.0267 33 1 4.2471 2.1650 2.5031 34 1 2.7593 1.1912 2.5842 35 1 4.0350 -0.6727 3.6074 36 1 5.5228 0.3010 3.5262 37 1 4.4822 2.0139 4.9856 38 1 2.9942 1.0408 5.0672 39 1 5.1629 -0.5773 5.8780 40 1 5.4977 -0.8961 8.1660 41 1 5.1969 1.3332 9.8738 42 1 3.7096 0.3589 9.9561 43 1 5.0527 -1.6397 10.5499 44 1 6.5395 -0.6647 10.4674 45 1 5.6767 0.8052 12.2678 46 1 4.1895 -0.1693 12.3509 47 1 5.1950 0.2241 15.8720 48 1 4.5066 3.1182 0.7828 49 1 3.4200 3.3854 -0.6487 50 1 5.4054 2.7481 -1.9366 51 1 6.0835 1.7945 -0.5467 52 1 3.5345 1.1891 -2.2114 53 1 4.6692 0.0013 -1.4365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678788174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:33 Heat of formation + Delta-G solvation = -154.544748 kcal Electronic energy + Delta-G solvation = -28487.992866 eV Core-core repulsion = 24358.329044 eV Total energy + Delta-G solvation = -4129.663822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09018 -41.02037 -39.71880 -37.52836 -37.34144 -36.61544 -35.18883 -34.52291 -32.91265 -30.66253 -29.11370 -28.31859 -26.86532 -26.52883 -25.05477 -23.93032 -22.56999 -22.35408 -22.24762 -21.66878 -19.74639 -19.18015 -18.53433 -18.35332 -17.95266 -17.43324 -17.25120 -17.07245 -16.48039 -16.46039 -16.05678 -15.57808 -15.44742 -15.30682 -15.19223 -14.53600 -14.38154 -14.25473 -14.01228 -13.79299 -13.70968 -13.48559 -13.41839 -13.14068 -12.78513 -12.74124 -12.60438 -12.53277 -12.40652 -12.35628 -12.18518 -12.03961 -11.84328 -11.69396 -11.65687 -11.63233 -11.36880 -11.27562 -11.15021 -11.09627 -11.05890 -10.54073 -10.39644 -9.75356 -8.18049 -6.29714 1.11464 1.42850 1.44430 1.55285 1.72022 1.75954 2.14384 2.43271 3.15739 3.23857 3.35653 3.46888 3.68293 3.83840 3.89082 3.97617 4.02785 4.18436 4.24341 4.24556 4.26478 4.31257 4.43039 4.56111 4.57445 4.61236 4.67027 4.74106 4.77396 4.82960 4.84908 4.94433 4.97100 4.99596 5.03985 5.10010 5.14811 5.16722 5.18744 5.30691 5.38847 5.41812 5.47381 5.48602 5.52615 5.55990 5.72444 5.85600 6.04259 6.23909 6.68504 6.87688 7.14444 7.39913 7.59299 8.94062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.001298 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.831299 B =21572.032173 C =21916.043333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.543 6.543 5 C -0.083 4.083 6 C -0.085 4.085 7 C -0.118 4.118 8 C -0.113 4.113 9 C 0.136 3.864 10 N -0.730 5.730 11 C 0.694 3.306 12 O -0.645 6.645 13 N -0.729 5.729 14 C 0.149 3.851 15 C -0.100 4.100 16 C 0.022 3.978 17 C -0.541 4.541 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.260 1.260 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.116 4.116 28 H 0.131 0.869 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.415 0.585 40 H 0.413 0.587 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.069 0.931 45 H -0.008 1.008 46 H -0.008 1.008 47 H 0.263 0.737 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.106 0.894 52 H 0.077 0.923 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -4.030 -40.091 40.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.433 6.433 5 C -0.084 4.084 6 C -0.122 4.122 7 C -0.157 4.157 8 C -0.151 4.151 9 C 0.011 3.989 10 N -0.387 5.387 11 C 0.393 3.607 12 O -0.527 6.527 13 N -0.385 5.385 14 C 0.024 3.976 15 C -0.137 4.137 16 C -0.016 4.016 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.184 1.184 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.153 4.153 28 H 0.149 0.851 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.252 0.748 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.125 0.875 52 H 0.096 0.904 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.804 -2.769 -39.739 39.843 hybrid contribution -0.295 -0.387 1.021 1.131 sum -1.099 -3.155 -38.718 38.861 Atomic orbital electron populations 1.23506 0.75485 1.05585 1.02138 1.86516 1.24359 1.33127 1.83476 1.24300 0.92747 0.80931 0.70502 1.90647 1.67978 1.37671 1.47025 1.22232 0.84713 1.00841 1.00622 1.21407 1.02388 0.98761 0.89695 1.21502 0.99852 1.00157 0.94144 1.21673 1.03017 0.99856 0.90510 1.21251 0.97390 0.94896 0.85324 1.44931 1.59015 1.31641 1.03079 1.16255 0.79839 0.82763 0.81836 1.90894 1.47811 1.29345 1.84698 1.45006 1.58035 1.30562 1.04902 1.21069 0.99484 0.97850 0.79187 1.21582 1.00211 0.98054 0.93898 1.18959 0.95317 0.95514 0.91786 1.21690 1.33358 1.10856 0.92006 0.91400 1.26038 0.96169 0.97373 1.00560 1.70120 1.43642 1.30418 1.13375 0.85398 0.78312 0.79337 0.77680 1.19816 1.21126 1.18355 1.23036 0.98294 0.93482 1.01630 1.22847 0.96978 0.96926 0.99783 1.22967 0.97941 1.01594 0.92825 0.85124 0.92675 0.92068 0.89570 0.87379 0.91146 0.94176 0.89820 0.88725 0.93002 0.93833 0.74832 0.75021 0.93651 0.93740 0.91269 0.91193 0.98967 0.99008 0.92861 0.89871 0.90822 0.90146 0.87539 0.90414 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.48 10.44 -51.40 -0.54 -6.01 16 3 C 0.47 8.20 6.22 71.24 0.44 8.64 16 4 O -0.54 -13.21 15.70 21.98 0.35 -12.86 16 5 C -0.08 -0.88 0.90 -52.40 -0.05 -0.93 16 6 C -0.09 -0.59 4.54 30.59 0.14 -0.45 16 7 C -0.12 -1.26 4.92 30.59 0.15 -1.11 16 8 C -0.11 -1.05 5.33 30.59 0.16 -0.88 16 9 C 0.14 2.51 5.67 86.38 0.49 3.00 16 10 N -0.73 -14.47 5.56 -478.54 -2.66 -17.13 16 11 C 0.69 21.30 8.57 179.06 1.53 22.84 16 12 O -0.65 -26.86 16.34 -4.00 -0.07 -26.93 16 13 N -0.73 -20.56 5.56 -478.55 -2.66 -23.22 16 14 C 0.15 5.44 5.67 86.38 0.49 5.93 16 15 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 16 C 0.02 1.15 4.97 29.85 0.15 1.30 16 17 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 20 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 21 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 C -0.13 -1.37 6.78 31.12 0.21 -1.16 16 26 C -0.13 -0.69 7.73 31.12 0.24 -0.45 16 27 C -0.12 -0.77 7.21 31.12 0.22 -0.55 16 28 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 32 H 0.11 0.26 7.31 -2.39 -0.02 0.24 16 33 H 0.07 0.79 6.76 -2.38 -0.02 0.77 16 34 H 0.04 0.61 7.56 -2.39 -0.02 0.59 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 4.90 8.49 -92.71 -0.79 4.12 16 40 H 0.41 8.37 8.49 -92.71 -0.79 7.58 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 47 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 48 H 0.08 0.85 6.70 -2.38 -0.02 0.83 16 49 H 0.07 1.10 7.52 -2.39 -0.02 1.08 16 50 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.11 0.23 7.61 -2.39 -0.02 0.21 16 52 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 53 H 0.10 0.33 8.10 -2.39 -0.02 0.31 16 Total: -1.00 -81.26 431.39 2.29 -78.97 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.68 Total: 14.33 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.24 Total: 4.24 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.04 Total: -97.49 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.26 Total: -45.80 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.26 2.29 -78.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678788174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.580 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds