Wall clock time and date at job start Sat Apr 11 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99995 * 2 1 4 4 C 1.52994 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47385 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47409 * 179.97438 * 5 4 3 7 7 C 1.42902 * 114.00178 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47106 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46788 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00011 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99434 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99658 * 179.97438 * 11 9 8 13 13 H 1.09002 * 115.55464 * 9.31301 * 12 11 9 14 14 C 1.53034 * 117.50341 * 223.58175 * 12 11 9 15 15 C 1.52820 * 117.50490 * 154.99514 * 12 11 9 16 16 C 1.53188 * 117.71294 * 359.86220 * 15 12 11 17 17 C 1.53343 * 108.77223 * 158.88914 * 16 15 12 18 18 N 1.46843 * 108.81709 * 51.30377 * 17 16 15 19 19 C 1.36937 * 120.38080 * 123.07914 * 18 17 16 20 20 H 1.07997 * 120.00081 * 207.85237 * 19 18 17 21 21 C 1.38814 * 119.99977 * 27.86031 * 19 18 17 22 22 N 1.31623 * 119.99662 * 214.76069 * 21 19 18 23 23 Si 1.86791 * 120.00451 * 34.75593 * 21 19 18 24 24 H 1.48506 * 109.47132 * 95.38585 * 23 21 19 25 25 H 1.48501 * 109.47328 * 215.38642 * 23 21 19 26 26 H 1.48504 * 109.47184 * 335.38818 * 23 21 19 27 27 C 1.46847 * 119.23366 * 303.09893 * 18 17 16 28 28 C 1.53182 * 117.71755 * 215.10205 * 15 12 11 29 29 H 1.09009 * 109.46714 * 299.99623 * 1 2 3 30 30 H 1.09000 * 109.47386 * 59.99663 * 1 2 3 31 31 H 1.08999 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46957 * 60.00515 * 3 2 1 33 33 H 1.08994 * 109.47119 * 300.00741 * 3 2 1 34 34 H 1.08996 * 109.47401 * 59.99996 * 4 3 2 35 35 H 1.09007 * 109.47390 * 300.00409 * 4 3 2 36 36 H 1.09002 * 109.46933 * 60.00041 * 5 4 3 37 37 H 1.08994 * 109.46885 * 300.00424 * 5 4 3 38 38 H 1.09004 * 109.46552 * 60.00604 * 7 6 5 39 39 H 1.08997 * 109.46703 * 300.00372 * 7 6 5 40 40 H 1.08996 * 109.47108 * 59.99816 * 8 7 6 41 41 H 1.09002 * 109.47240 * 300.00078 * 8 7 6 42 42 H 0.96999 * 120.00697 * 359.97438 * 11 9 8 43 43 H 1.08997 * 117.50015 * 359.97438 * 14 12 11 44 44 H 1.08996 * 117.50404 * 145.04226 * 14 12 11 45 45 H 1.09001 * 109.58188 * 278.67683 * 16 15 12 46 46 H 1.09002 * 109.58545 * 39.09576 * 16 15 12 47 47 H 1.09002 * 109.57934 * 291.50604 * 17 16 15 48 48 H 1.08996 * 109.58451 * 171.10887 * 17 16 15 49 49 H 0.96999 * 119.99686 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.58267 * 297.10849 * 27 18 17 51 51 H 1.08996 * 109.58024 * 176.70357 * 27 18 17 52 52 H 1.09002 * 109.58683 * 320.90022 * 28 15 12 53 53 H 1.08996 * 109.58953 * 81.18673 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 8 5.5823 2.4696 0.0000 7 6 6.2648 3.7251 0.0000 8 6 7.7757 3.4842 -0.0006 9 6 8.4954 4.8082 0.0000 10 8 7.8623 5.8426 0.0004 11 7 9.8427 4.8427 -0.0009 12 6 10.5424 6.1299 -0.0009 13 1 9.9145 7.0064 0.1591 14 6 11.7432 6.2815 -0.9374 15 6 11.9592 6.1630 0.5711 16 6 12.5428 4.8511 1.1049 17 6 14.0718 4.9643 1.1277 18 7 14.4449 6.1988 1.8300 19 6 15.2682 6.1518 2.9232 20 1 15.1966 6.9128 3.6862 21 6 16.1947 5.1261 3.0508 22 7 16.4828 4.6438 4.2411 23 14 17.0327 4.4302 1.5333 24 1 18.3433 5.1011 1.3400 25 1 17.2448 2.9711 1.7102 26 1 16.1760 4.6651 0.3432 27 6 13.9246 7.4841 1.3466 28 6 12.3925 7.4219 1.3285 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8567 0.6440 -0.8908 35 1 3.8575 0.6436 0.8891 36 1 3.8365 3.1228 0.8905 37 1 3.8358 3.1239 -0.8894 38 1 5.9869 4.2896 0.8901 39 1 5.9868 4.2897 -0.8899 40 1 8.0533 2.9197 -0.8908 41 1 8.0540 2.9193 0.8891 42 1 10.3492 4.0155 -0.0016 43 1 12.0127 5.4235 -1.5532 44 1 11.9053 7.2579 -1.3939 45 1 12.1745 4.6717 2.1150 46 1 12.2468 4.0281 0.4543 47 1 14.4510 4.9963 0.1062 48 1 14.4941 4.1054 1.6493 49 1 17.1300 3.9268 4.3302 50 1 14.2946 7.6722 0.3387 51 1 14.2500 8.2835 2.0123 52 1 11.9969 8.3048 0.8264 53 1 12.0141 7.3822 2.3500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690128264.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:55 Heat of formation + Delta-G solvation = -109.205803 kcal Electronic energy + Delta-G solvation = -28970.109247 eV Core-core repulsion = 24842.411469 eV Total energy + Delta-G solvation = -4127.697778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.21623 -39.95826 -39.26093 -38.58550 -37.23871 -34.60129 -34.19240 -33.54781 -32.06686 -31.91906 -30.17048 -27.96298 -26.08121 -25.90507 -24.91748 -24.39953 -23.14210 -22.68639 -22.19365 -21.30375 -19.90921 -18.65461 -18.35971 -17.68323 -17.56519 -17.27250 -16.97501 -16.94609 -16.73418 -16.05391 -15.92704 -15.73869 -15.53529 -15.20421 -15.14713 -14.83360 -14.79432 -14.43164 -14.25580 -14.17691 -13.70513 -13.61241 -13.32001 -12.98856 -12.86614 -12.67838 -12.64113 -12.60728 -12.48097 -12.27672 -12.26501 -12.01080 -11.93527 -11.92290 -11.50764 -11.43509 -11.24097 -11.05564 -10.72879 -10.65496 -10.62447 -10.49429 -9.67633 -8.83738 -8.20052 -5.37254 1.37532 1.48017 1.51818 1.55192 1.86505 2.47889 2.49139 2.92294 3.00212 3.15927 3.47021 3.69480 3.76633 3.85477 3.91093 3.95150 4.04797 4.05533 4.08684 4.10946 4.29315 4.39385 4.44348 4.44366 4.48911 4.53180 4.54955 4.57384 4.61606 4.66477 4.75593 4.78267 4.82662 4.85748 4.90217 4.94505 4.97432 5.01851 5.02986 5.08095 5.12323 5.17951 5.26874 5.34982 5.51833 5.56942 5.91465 6.12482 6.14767 6.22013 6.49085 6.99013 7.17803 7.70864 8.12367 8.98837 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.001569 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.875648 B =17839.209329 C =18640.780238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.063 3.937 4 C -0.115 4.115 5 C 0.065 3.935 6 O -0.402 6.402 7 C 0.082 3.918 8 C -0.133 4.133 9 C 0.522 3.478 10 O -0.583 6.583 11 N -0.689 5.689 12 C 0.083 3.917 13 H 0.124 0.876 14 C -0.163 4.163 15 C -0.121 4.121 16 C -0.090 4.090 17 C 0.144 3.856 18 N -0.613 5.613 19 C -0.264 4.264 20 H 0.042 0.958 21 C -0.017 4.017 22 N -0.937 5.937 23 Si 0.905 3.095 24 H -0.304 1.304 25 H -0.298 1.298 26 H -0.226 1.226 27 C 0.146 3.854 28 C -0.089 4.089 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.414 0.586 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.261 0.739 50 H 0.040 0.960 51 H 0.051 0.949 52 H 0.085 0.915 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.744 -5.370 -14.567 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.013 4.013 4 C -0.152 4.152 5 C -0.012 4.012 6 O -0.322 6.322 7 C 0.005 3.995 8 C -0.172 4.172 9 C 0.310 3.690 10 O -0.464 6.464 11 N -0.339 5.339 12 C -0.023 4.023 13 H 0.141 0.859 14 C -0.201 4.201 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.019 3.981 18 N -0.337 5.337 19 C -0.393 4.393 20 H 0.060 0.940 21 C -0.215 4.215 22 N -0.581 5.581 23 Si 0.732 3.268 24 H -0.232 1.232 25 H -0.225 1.225 26 H -0.150 1.150 27 C 0.021 3.979 28 C -0.128 4.128 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.252 0.748 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.103 0.897 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -28.925 -5.085 -14.476 32.742 hybrid contribution 1.041 -0.208 0.174 1.076 sum -27.884 -5.294 -14.302 31.782 Atomic orbital electron populations 1.22935 0.79257 1.03864 1.01012 1.87828 1.21665 1.28801 1.95663 1.22418 0.92706 0.84595 1.01581 1.21314 0.93458 0.96516 1.03947 1.22400 0.80072 0.97126 1.01567 1.87761 1.19059 1.29675 1.95678 1.22051 0.91160 0.84993 1.01332 1.21445 0.93875 0.94345 1.07581 1.20811 0.82197 0.91483 0.74505 1.90686 1.67121 1.36919 1.51640 1.45353 1.06047 1.08890 1.73630 1.21684 0.87748 0.88110 1.04788 0.85861 1.23655 0.99899 1.04626 0.91952 1.21787 0.97236 0.96997 0.96227 1.21509 0.96053 0.95146 1.00250 1.21337 0.93668 0.88082 0.94986 1.44387 1.54048 1.02313 1.32991 1.18740 1.12796 1.11226 0.96525 0.94018 1.25794 0.99167 0.98348 0.98143 1.70186 1.35468 1.27125 1.25314 0.86519 0.79825 0.76084 0.84396 1.23216 1.22494 1.14967 1.21052 0.92513 0.86963 0.97359 1.21513 0.96514 0.95635 0.99165 0.93079 0.92949 0.88691 0.92004 0.91800 0.90873 0.91132 0.92208 0.91866 0.93139 0.92597 0.85743 0.86469 0.74805 0.87441 0.86975 0.93245 0.89809 0.94208 0.94147 0.93021 0.94220 0.93039 0.89688 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.41 10.70 -148.98 -1.59 -8.00 16 3 C 0.06 0.72 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.53 5.95 30.59 0.18 -1.35 16 5 C 0.06 0.86 5.94 71.98 0.43 1.29 16 6 O -0.40 -7.12 10.34 -148.98 -1.54 -8.66 16 7 C 0.08 1.42 5.23 71.98 0.38 1.80 16 8 C -0.13 -2.03 6.07 29.85 0.18 -1.85 16 9 C 0.52 11.29 7.83 87.66 0.69 11.98 16 10 O -0.58 -17.14 15.55 -3.02 -0.05 -17.19 16 11 N -0.69 -13.80 5.35 -442.77 -2.37 -16.17 16 12 C 0.08 1.94 6.14 44.94 0.28 2.21 16 13 H 0.12 3.21 7.40 -2.39 -0.02 3.19 16 14 C -0.16 -3.46 9.87 30.56 0.30 -3.16 16 15 C -0.12 -3.27 1.94 -52.17 -0.10 -3.37 16 16 C -0.09 -2.78 5.37 30.77 0.17 -2.61 16 17 C 0.14 5.73 4.36 86.43 0.38 6.10 16 18 N -0.61 -27.97 2.66 -698.91 -1.86 -29.83 16 19 C -0.26 -14.80 9.83 84.03 0.83 -13.98 16 20 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 21 C -0.02 -1.00 4.86 84.86 0.41 -0.59 16 22 N -0.94 -58.16 13.97 21.65 0.30 -57.86 16 23 Si 0.90 43.64 26.39 68.60 1.81 45.45 16 24 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.23 -9.76 4.84 99.48 0.48 -9.28 16 27 C 0.15 5.40 6.52 86.43 0.56 5.97 16 28 C -0.09 -2.71 5.83 30.77 0.18 -2.53 16 29 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 39 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.41 6.47 7.12 -92.71 -0.66 5.81 16 43 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 1.95 6.75 -2.39 -0.02 1.93 16 47 H 0.04 1.50 6.77 -2.39 -0.02 1.48 16 48 H 0.04 1.80 5.46 -2.39 -0.01 1.78 16 49 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 52 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 53 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.54 419.05 1.22 -72.32 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.01 Total: 17.40 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.53 Total: 2.53 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -3.93 Total: -103.85 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -3.18 Total: -33.85 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.81 Total: 45.45 kcal Total: -73.54 1.22 -72.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690128264.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.890 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds