Wall clock time and date at job start Sat Apr 11 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00248 * 2 1 4 4 C 1.52999 * 109.47045 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47408 * 64.99663 * 4 3 2 6 6 C 1.42902 * 113.99879 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.46608 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46722 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00214 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99684 * 179.97438 * 8 7 6 11 11 C 1.46950 * 120.84590 * 359.72650 * 10 8 7 12 12 C 1.53612 * 108.76850 * 125.93396 * 11 10 8 13 13 C 1.53117 * 109.40570 * 54.31470 * 12 11 10 14 14 C 1.52845 * 109.34355 * 299.21050 * 13 12 11 15 15 H 1.09005 * 108.59078 * 302.88339 * 14 13 12 16 16 C 1.52861 * 109.62123 * 182.81304 * 14 13 12 17 17 N 1.46887 * 109.75445 * 291.90608 * 16 14 13 18 18 C 1.36931 * 120.76866 * 127.08194 * 17 16 14 19 19 H 1.07999 * 119.99961 * 207.52759 * 18 17 16 20 20 C 1.38812 * 120.00265 * 27.53122 * 18 17 16 21 21 N 1.31612 * 120.00101 * 17.32068 * 20 18 17 22 22 Si 1.86804 * 119.99964 * 197.32362 * 20 18 17 23 23 H 1.48501 * 109.47167 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46895 * 119.99636 * 22 20 18 25 25 H 1.48495 * 109.47333 * 239.99904 * 22 20 18 26 26 C 1.46974 * 118.45625 * 307.09788 * 17 16 14 27 27 C 1.53096 * 108.61700 * 54.31381 * 26 17 16 28 28 C 1.47310 * 120.84132 * 180.02562 * 10 8 7 29 29 H 1.08997 * 110.07125 * 355.07341 * 28 10 8 30 30 H 1.09003 * 109.46975 * 300.00036 * 1 2 3 31 31 H 1.08994 * 109.47698 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47150 * 59.99687 * 1 2 3 33 33 H 1.08998 * 109.46894 * 300.00094 * 3 2 1 34 34 H 1.08997 * 109.46916 * 59.99918 * 3 2 1 35 35 H 1.09000 * 109.47022 * 185.00328 * 4 3 2 36 36 H 1.09004 * 109.47200 * 304.99895 * 4 3 2 37 37 H 1.08994 * 109.47363 * 300.00107 * 6 5 4 38 38 H 1.08996 * 109.46903 * 60.00406 * 6 5 4 39 39 H 1.08994 * 109.47203 * 300.00030 * 7 6 5 40 40 H 1.08996 * 109.47300 * 60.00474 * 7 6 5 41 41 H 1.08997 * 109.54115 * 245.84782 * 11 10 8 42 42 H 1.08998 * 109.54089 * 6.12120 * 11 10 8 43 43 H 1.08995 * 109.61904 * 294.26127 * 12 11 10 44 44 H 1.09010 * 109.39137 * 174.22381 * 12 11 10 45 45 H 1.09001 * 109.49606 * 179.24178 * 13 12 11 46 46 H 1.09003 * 109.51430 * 59.18266 * 13 12 11 47 47 H 1.09007 * 108.88339 * 172.03446 * 16 14 13 48 48 H 1.09001 * 109.63277 * 52.24436 * 16 14 13 49 49 H 0.97000 * 120.00123 * 179.97438 * 21 20 18 50 50 H 1.08997 * 109.61455 * 294.57011 * 26 17 16 51 51 H 1.08998 * 109.60870 * 174.05130 * 26 17 16 52 52 H 1.08994 * 109.45290 * 184.61311 * 27 26 17 53 53 H 1.09003 * 109.45065 * 64.67779 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4200 -1.3249 7 6 5.7246 -0.2333 -2.6652 8 6 7.2183 -0.4010 -2.7742 9 8 7.9373 -0.0346 -1.8688 10 7 7.7551 -0.9591 -3.8773 11 6 6.9008 -1.4161 -4.9822 12 6 7.3837 -0.7596 -6.2843 13 6 8.8756 -1.0465 -6.4759 14 6 9.6591 -0.4569 -5.3034 15 1 9.4467 0.6107 -5.2453 16 6 11.1555 -0.6784 -5.5229 17 7 11.4649 -2.1110 -5.4253 18 6 12.1475 -2.7500 -6.4257 19 1 11.9997 -3.8071 -6.5905 20 6 13.0293 -2.0391 -7.2282 21 7 13.4726 -0.8631 -6.8376 22 14 13.5869 -2.7518 -8.8624 23 1 12.9494 -4.0772 -9.0678 24 1 13.1915 -1.8360 -9.9625 25 1 15.0635 -2.9091 -8.8559 26 6 11.0246 -2.8427 -4.2291 27 6 9.5183 -2.6319 -4.0542 28 6 9.2125 -1.1325 -4.0031 29 1 9.7183 -0.6768 -3.1519 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 3.9786 2.1764 0.0890 36 1 3.8515 0.5681 0.8410 37 1 5.8623 1.3960 -1.2631 38 1 5.7358 -0.2121 -0.5108 39 1 5.2435 -1.2094 -2.7275 40 1 5.3701 0.3991 -3.4791 41 1 6.9677 -2.5004 -5.0703 42 1 5.8679 -1.1276 -4.7878 43 1 7.2246 0.3174 -6.2321 44 1 6.8241 -1.1692 -7.1254 45 1 9.2167 -0.5926 -7.4063 46 1 9.0370 -2.1237 -6.5162 47 1 11.7088 -0.1334 -4.7580 48 1 11.4394 -0.3108 -6.5090 49 1 14.0891 -0.3665 -7.3982 50 1 11.5513 -2.4632 -3.3535 51 1 11.2334 -3.9053 -4.3527 52 1 9.1916 -3.1007 -3.1260 53 1 8.9889 -3.0821 -4.8939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690320749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:58 Heat of formation + Delta-G solvation = -129.377207 kcal Electronic energy + Delta-G solvation = -30910.865750 eV Core-core repulsion = 26782.293274 eV Total energy + Delta-G solvation = -4128.572475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67040 -39.78054 -39.22744 -38.10338 -37.07713 -34.46037 -33.97529 -33.06837 -31.80700 -31.14717 -30.46157 -27.35607 -27.11612 -26.46701 -24.91294 -23.58060 -23.50331 -23.48589 -22.72682 -20.28901 -19.38986 -18.59539 -18.40566 -17.82791 -17.50379 -16.99777 -16.93121 -16.82063 -16.25347 -16.13457 -16.00352 -15.85519 -15.35390 -15.18766 -15.00479 -14.65815 -14.51525 -14.25477 -14.02837 -13.83812 -13.77530 -13.54917 -13.21685 -13.13238 -12.92471 -12.64889 -12.59813 -12.48747 -12.43130 -12.21680 -12.07452 -11.97468 -11.95122 -11.81722 -11.76634 -11.43101 -11.32265 -11.07828 -10.75977 -10.64878 -10.58801 -10.52673 -9.55018 -8.68691 -7.86062 -5.30997 1.46951 1.49293 1.59479 1.60085 1.85190 2.52111 2.70555 2.88693 3.29648 3.57367 3.64872 3.79785 3.95772 3.98784 4.01487 4.06054 4.12183 4.16691 4.23905 4.25554 4.38894 4.44085 4.46379 4.50212 4.55329 4.59338 4.60400 4.63060 4.69626 4.72396 4.74091 4.82885 4.85689 4.89833 4.89906 4.96571 5.00231 5.05442 5.13327 5.16047 5.23685 5.32093 5.45953 5.60325 5.62040 5.68494 5.71461 6.12668 6.28721 6.39239 6.48944 7.14755 7.15089 7.85053 8.39090 9.21096 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.002038 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.089525 B =13732.460868 C =13984.077569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.062 3.938 4 C 0.056 3.944 5 O -0.395 6.395 6 C 0.082 3.918 7 C -0.125 4.125 8 C 0.513 3.487 9 O -0.593 6.593 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.100 4.100 14 C -0.105 4.105 15 H 0.055 0.945 16 C 0.188 3.812 17 N -0.600 5.600 18 C -0.252 4.252 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.297 1.297 26 C 0.142 3.858 27 C -0.123 4.123 28 C 0.162 3.838 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.062 0.938 47 H -0.020 1.020 48 H 0.062 0.938 49 H 0.249 0.751 50 H 0.005 0.995 51 H 0.063 0.937 52 H 0.066 0.934 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.388 2.838 8.750 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.315 6.315 6 C 0.005 3.995 7 C -0.165 4.165 8 C 0.303 3.697 9 O -0.474 6.474 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.126 4.126 15 H 0.073 0.927 16 C 0.061 3.939 17 N -0.323 5.323 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.246 4.246 21 N -0.584 5.584 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.217 1.217 25 H -0.224 1.224 26 C 0.016 3.984 27 C -0.162 4.162 28 C 0.059 3.941 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.081 0.919 47 H -0.002 1.002 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.949 2.874 8.991 28.554 hybrid contribution 1.341 0.366 -0.472 1.468 sum -25.608 3.239 8.519 27.182 Atomic orbital electron populations 1.22904 0.79572 1.03658 1.00898 1.87920 1.21404 1.28649 1.95620 1.22692 0.91479 0.85058 1.02219 1.22735 0.94188 0.98368 0.86763 1.87827 1.21765 1.82628 1.39271 1.22014 0.80967 0.99760 0.96755 1.21439 0.90147 1.05313 0.99572 1.20989 0.91364 0.76231 0.81092 1.90681 1.64300 1.52148 1.40293 1.48506 1.07074 1.59639 1.18150 1.22138 0.94879 0.99934 0.84958 1.21998 0.95059 1.01311 0.97962 1.21373 0.94926 1.01223 0.96222 1.21820 0.97132 0.98341 0.95282 0.92658 1.20427 0.89954 0.84336 0.99139 1.44202 1.64121 1.05951 1.18014 1.19511 1.16618 0.94437 1.07677 0.91157 1.25773 0.97398 0.98110 1.03309 1.70206 1.34558 1.16011 1.37645 0.85241 0.77067 0.78228 0.80124 1.18759 1.21744 1.22401 1.20995 0.92704 0.96268 0.88425 1.22162 0.97462 0.94860 1.01766 1.20942 0.80021 0.96140 0.97018 0.92010 0.92760 0.89056 0.93312 0.91938 0.89419 0.89956 0.92718 0.93121 0.93587 0.86098 0.85988 0.90151 0.86467 0.91632 0.88351 0.93581 0.91885 1.00179 0.91986 0.94232 0.97677 0.91813 0.91490 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.49 10.67 -144.34 -1.54 -9.03 16 3 C 0.06 0.82 6.32 71.98 0.45 1.27 16 4 C 0.06 0.88 6.32 71.98 0.45 1.34 16 5 O -0.40 -8.23 10.31 -144.34 -1.49 -9.72 16 6 C 0.08 1.77 5.23 71.98 0.38 2.15 16 7 C -0.13 -2.43 4.42 29.85 0.13 -2.30 16 8 C 0.51 14.54 7.71 87.66 0.68 15.21 16 9 O -0.59 -22.13 15.43 -3.03 -0.05 -22.18 16 10 N -0.60 -16.61 2.65 -793.05 -2.10 -18.72 16 11 C 0.10 2.00 5.89 86.50 0.51 2.51 16 12 C -0.13 -2.73 6.10 30.84 0.19 -2.54 16 13 C -0.10 -3.24 4.84 30.58 0.15 -3.09 16 14 C -0.10 -4.00 2.51 -10.83 -0.03 -4.02 16 15 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 16 C 0.19 9.25 4.65 86.26 0.40 9.65 16 17 N -0.60 -29.84 2.67 -699.90 -1.87 -31.70 16 18 C -0.25 -13.58 9.60 84.03 0.81 -12.78 16 19 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 20 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 21 N -0.94 -55.84 11.18 21.65 0.24 -55.59 16 22 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.14 6.00 6.51 86.32 0.56 6.56 16 27 C -0.12 -4.20 5.04 30.66 0.15 -4.04 16 28 C 0.16 5.74 2.61 44.94 0.12 5.86 16 29 H 0.06 2.59 7.06 -2.39 -0.02 2.58 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.12 1.90 7.93 -2.39 -0.02 1.88 16 40 H 0.12 1.87 7.72 -2.39 -0.02 1.85 16 41 H 0.08 1.49 7.25 -2.39 -0.02 1.47 16 42 H 0.12 1.48 5.96 -2.39 -0.01 1.47 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 2.22 6.22 -2.39 -0.01 2.20 16 47 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 48 H 0.06 3.42 6.03 -2.39 -0.01 3.40 16 49 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.01 0.23 8.14 -2.39 -0.02 0.22 16 51 H 0.06 2.57 7.94 -2.39 -0.02 2.55 16 52 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.08 2.49 5.41 -2.39 -0.01 2.48 16 Total: -1.00 -72.69 405.39 2.72 -69.98 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.87 Total: 15.59 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.62 Total: 14.89 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.73 Total: -106.01 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -3.07 Total: -40.92 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.69 2.72 -69.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690320749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.401 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds