Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00532 * 2 1 4 4 C 1.52996 * 109.47556 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47008 * 64.99555 * 4 3 2 6 6 C 1.42905 * 113.99990 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46938 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46652 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99590 * 180.02562 * 8 7 6 11 11 C 1.47066 * 120.84708 * 4.42715 * 10 8 7 12 12 C 1.53125 * 109.04894 * 233.45137 * 11 10 8 13 13 C 1.53148 * 109.62181 * 306.00929 * 12 11 10 14 14 C 1.52817 * 109.26923 * 60.84060 * 13 12 11 15 15 H 1.08999 * 109.47149 * 58.00709 * 14 13 12 16 16 C 1.53061 * 110.34253 * 178.55203 * 14 13 12 17 17 N 1.47065 * 108.33623 * 175.43559 * 16 14 13 18 18 C 1.36935 * 120.47024 * 126.70890 * 17 16 14 19 19 H 1.07999 * 119.99948 * 319.32504 * 18 17 16 20 20 C 1.38816 * 120.00247 * 139.33539 * 18 17 16 21 21 N 1.31622 * 120.00094 * 174.12494 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 354.12084 * 20 18 17 23 23 H 1.48501 * 109.46894 * 86.27235 * 22 20 18 24 24 H 1.48501 * 109.47068 * 206.27386 * 22 20 18 25 25 H 1.48500 * 109.46990 * 326.27191 * 22 20 18 26 26 C 1.46866 * 119.06164 * 306.67947 * 17 16 14 27 27 C 1.53318 * 109.09463 * 52.65891 * 26 17 16 28 28 C 1.46486 * 120.80204 * 184.40670 * 10 8 7 29 29 H 1.09001 * 109.72737 * 245.28672 * 28 10 8 30 30 H 1.08995 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46931 * 300.00750 * 1 2 3 32 32 H 1.08999 * 109.46817 * 59.99672 * 1 2 3 33 33 H 1.09003 * 109.47346 * 59.99691 * 3 2 1 34 34 H 1.09004 * 109.46758 * 300.00166 * 3 2 1 35 35 H 1.08994 * 109.47152 * 304.99984 * 4 3 2 36 36 H 1.09000 * 109.47733 * 184.99514 * 4 3 2 37 37 H 1.08998 * 109.46652 * 60.00446 * 6 5 4 38 38 H 1.09005 * 109.47241 * 300.00505 * 6 5 4 39 39 H 1.08992 * 109.46944 * 60.00288 * 7 6 5 40 40 H 1.08993 * 109.47100 * 300.00051 * 7 6 5 41 41 H 1.09007 * 109.54410 * 113.58424 * 11 10 8 42 42 H 1.09001 * 109.61494 * 353.36931 * 11 10 8 43 43 H 1.08995 * 109.44921 * 185.96081 * 12 11 10 44 44 H 1.09004 * 109.44492 * 66.04790 * 12 11 10 45 45 H 1.09004 * 109.50068 * 300.90444 * 13 12 11 46 46 H 1.09003 * 109.50662 * 180.77950 * 13 12 11 47 47 H 1.09000 * 109.69069 * 55.72490 * 16 14 13 48 48 H 1.08998 * 109.69032 * 295.14556 * 16 14 13 49 49 H 0.97001 * 119.99874 * 179.97438 * 21 20 18 50 50 H 1.09006 * 109.53314 * 292.77672 * 26 17 16 51 51 H 1.08996 * 109.60075 * 172.58355 * 26 17 16 52 52 H 1.08997 * 109.56198 * 65.73154 * 27 26 17 53 53 H 1.09001 * 109.55454 * 185.94295 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5790 -1.2201 6 6 5.3823 0.4194 -1.3220 7 6 5.7268 -0.2344 -2.6618 8 6 7.2205 -0.4032 -2.7689 9 8 7.9387 -0.0362 -1.8632 10 7 7.7581 -0.9609 -3.8717 11 6 6.9151 -1.3229 -5.0212 12 6 7.1589 -2.7922 -5.3767 13 6 8.6570 -3.0280 -5.5902 14 6 9.4077 -2.7022 -4.2996 15 1 9.0229 -3.3214 -3.4893 16 6 10.9056 -2.9641 -4.4748 17 7 11.5968 -2.5340 -3.2500 18 6 12.4319 -3.3925 -2.5861 19 1 12.1593 -4.4314 -2.4729 20 6 13.6286 -2.9274 -2.0584 21 7 14.3761 -3.7220 -1.3220 22 14 14.1783 -1.1738 -2.3936 23 1 13.5762 -0.2651 -1.3853 24 1 15.6589 -1.0947 -2.3099 25 1 13.7369 -0.7679 -3.7521 26 6 11.3792 -1.1706 -2.7493 27 6 9.8725 -0.9193 -2.6171 28 6 9.1972 -1.2213 -3.9552 29 1 9.6389 -0.6002 -4.7345 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5684 0.8427 36 1 3.9786 2.1764 0.0901 37 1 5.7362 -0.2124 -0.5074 38 1 5.8633 1.3956 -1.2601 39 1 5.3728 0.3977 -3.4761 40 1 5.2458 -1.2104 -2.7240 41 1 7.1717 -0.6941 -5.8739 42 1 5.8655 -1.1790 -4.7649 43 1 6.6189 -3.0388 -6.2908 44 1 6.8041 -3.4259 -4.5639 45 1 9.0160 -2.3835 -6.3927 46 1 8.8269 -4.0712 -5.8567 47 1 11.2805 -2.3966 -5.3266 48 1 11.0757 -4.0282 -4.6382 49 1 15.2125 -3.3971 -0.9536 50 1 11.8084 -0.4528 -3.4484 51 1 11.8542 -1.0588 -1.7747 52 1 9.4604 -1.5696 -1.8455 53 1 9.6986 0.1224 -2.3475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690320750.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -118.618100 kcal Electronic energy + Delta-G solvation = -31090.386680 eV Core-core repulsion = 26962.280755 eV Total energy + Delta-G solvation = -4128.105925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82107 -39.65628 -39.16073 -38.11849 -37.50525 -34.69639 -34.12634 -33.34485 -32.11874 -31.19270 -30.48885 -27.35613 -27.13910 -26.47446 -24.67833 -24.25602 -23.52987 -23.47851 -21.71814 -21.23669 -19.91781 -18.86146 -18.24969 -17.82594 -17.44551 -17.33333 -16.93406 -16.78095 -16.25932 -16.18980 -16.08776 -15.84343 -15.51292 -15.43200 -14.94745 -14.78412 -14.62528 -14.45961 -14.18390 -13.89825 -13.69247 -13.67684 -13.48236 -13.25780 -13.14473 -12.75045 -12.59272 -12.47294 -12.28660 -12.24873 -12.19130 -12.07047 -11.97844 -11.84478 -11.70935 -11.68295 -11.41713 -11.25942 -10.71691 -10.66757 -10.60582 -10.12960 -9.51839 -8.71360 -8.20355 -5.70159 1.29635 1.34594 1.45901 1.60701 1.87340 2.38054 2.69176 2.87302 3.08598 3.27916 3.56742 3.78625 3.79676 3.93380 4.01525 4.03282 4.13125 4.15493 4.22081 4.24265 4.28151 4.39883 4.44403 4.46447 4.48034 4.53653 4.57647 4.61099 4.62233 4.69471 4.74846 4.76761 4.80401 4.85135 4.85691 4.88262 4.90597 4.90750 5.00302 5.13893 5.15748 5.26743 5.36647 5.37376 5.56430 5.67743 5.92753 6.10943 6.12235 6.27476 6.48614 6.92668 7.21091 7.56097 8.02817 8.98373 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002484 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.135357 B =11268.519738 C =12311.361946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.062 3.938 4 C 0.055 3.945 5 O -0.394 6.394 6 C 0.081 3.919 7 C -0.125 4.125 8 C 0.509 3.491 9 O -0.574 6.574 10 N -0.605 5.605 11 C 0.100 3.900 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.104 4.104 15 H 0.044 0.956 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.254 4.254 19 H 0.041 0.959 20 C -0.029 4.029 21 N -0.961 5.961 22 Si 0.959 3.041 23 H -0.280 1.280 24 H -0.306 1.306 25 H -0.253 1.253 26 C 0.115 3.885 27 C -0.105 4.105 28 C 0.162 3.838 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.056 0.944 49 H 0.263 0.737 50 H 0.034 0.966 51 H 0.041 0.959 52 H 0.035 0.965 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.884 11.947 -8.012 33.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.314 6.314 6 C 0.004 3.996 7 C -0.165 4.165 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.125 4.125 15 H 0.062 0.938 16 C 0.029 3.971 17 N -0.348 5.348 18 C -0.384 4.384 19 H 0.059 0.941 20 C -0.225 4.225 21 N -0.606 5.606 22 Si 0.788 3.212 23 H -0.207 1.207 24 H -0.234 1.234 25 H -0.177 1.177 26 C -0.010 4.010 27 C -0.144 4.144 28 C 0.059 3.941 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.051 0.949 51 H 0.059 0.941 52 H 0.054 0.946 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -29.407 11.892 -7.623 32.624 hybrid contribution 1.105 0.452 0.971 1.539 sum -28.303 12.343 -6.652 31.585 Atomic orbital electron populations 1.22907 0.79530 1.03634 1.00953 1.87926 1.21459 1.28718 1.95627 1.22691 0.91370 0.85035 1.02285 1.22733 0.94283 0.98336 0.86731 1.87820 1.21797 1.82633 1.39168 1.22023 0.80957 0.99812 0.96783 1.21451 0.90625 1.04898 0.99506 1.20970 0.91161 0.76669 0.81291 1.90745 1.62736 1.51366 1.40628 1.48220 1.07906 1.60639 1.16995 1.22131 0.95708 0.96409 0.87809 1.21901 0.95800 0.95786 1.03143 1.21505 0.95233 1.02492 0.95438 1.21936 0.96428 0.95208 0.98961 0.93766 1.21129 0.90154 0.98641 0.87216 1.44467 1.52809 1.10837 1.26723 1.18731 0.97164 0.92423 1.30099 0.94145 1.26285 0.95699 1.01975 0.98501 1.69899 1.14905 1.38040 1.37752 0.85727 0.75327 0.80561 0.79612 1.20707 1.23398 1.17687 1.21621 0.96118 0.86429 0.96834 1.22276 0.93726 1.02217 0.96178 1.20998 0.79992 0.95873 0.97236 0.90398 0.89142 0.92802 0.93123 0.89504 0.91669 0.93143 0.89803 0.94344 0.92709 0.85508 0.86900 0.89151 0.87041 0.87380 0.92628 0.90235 0.91085 0.94067 0.92537 0.92820 0.94857 0.94075 0.94596 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.84 10.67 -144.34 -1.54 -9.38 16 3 C 0.06 0.86 6.32 71.98 0.45 1.31 16 4 C 0.06 0.93 6.32 71.98 0.45 1.38 16 5 O -0.39 -8.37 10.31 -144.34 -1.49 -9.86 16 6 C 0.08 1.79 5.23 71.98 0.38 2.16 16 7 C -0.13 -2.35 4.43 29.85 0.13 -2.22 16 8 C 0.51 13.78 7.59 87.66 0.67 14.45 16 9 O -0.57 -20.73 11.63 -3.03 -0.04 -20.77 16 10 N -0.61 -14.87 2.96 -795.46 -2.36 -17.23 16 11 C 0.10 1.45 6.34 86.31 0.55 1.99 16 12 C -0.13 -1.93 6.07 30.69 0.19 -1.75 16 13 C -0.11 -2.27 5.24 30.58 0.16 -2.11 16 14 C -0.10 -3.31 2.21 -10.67 -0.02 -3.33 16 15 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 16 C 0.15 6.05 5.86 86.29 0.51 6.56 16 17 N -0.62 -31.15 2.65 -698.90 -1.85 -33.00 16 18 C -0.25 -15.29 9.98 84.03 0.84 -14.45 16 19 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 20 C -0.03 -1.81 5.40 84.86 0.46 -1.35 16 21 N -0.96 -63.01 13.97 21.65 0.30 -62.70 16 22 Si 0.96 49.46 24.33 68.60 1.67 51.13 16 23 H -0.28 -14.10 6.66 99.48 0.66 -13.44 16 24 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 25 H -0.25 -12.22 6.36 99.48 0.63 -11.58 16 26 C 0.12 5.38 4.16 86.42 0.36 5.74 16 27 C -0.10 -4.25 3.81 30.66 0.12 -4.14 16 28 C 0.16 5.11 2.64 45.12 0.12 5.22 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.05 1.21 8.10 -2.38 -0.02 1.19 16 39 H 0.13 1.66 7.77 -2.39 -0.02 1.65 16 40 H 0.11 1.87 7.88 -2.39 -0.02 1.85 16 41 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 42 H 0.11 1.03 5.97 -2.39 -0.01 1.02 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 49 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 50 H 0.03 1.49 6.59 -2.38 -0.02 1.47 16 51 H 0.04 2.14 5.21 -2.39 -0.01 2.13 16 52 H 0.04 1.66 7.44 -2.39 -0.02 1.64 16 53 H 0.08 3.46 6.13 -2.39 -0.01 3.45 16 Total: -1.00 -80.67 398.88 2.05 -78.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.75 Total: 12.19 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.60 Total: 11.00 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.91 Total: -112.93 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -3.06 Total: -40.01 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.67 Total: 51.13 kcal Total: -80.67 2.05 -78.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690320750.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.996 kcal (2) G-P(sol) polarization free energy of solvation -80.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds