Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 114.00190 * 2 1 4 4 C 1.53005 * 109.47294 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47295 * 64.99433 * 4 3 2 6 6 C 1.42898 * 114.00287 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47314 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47045 * 180.02562 * 7 6 5 9 9 O 1.21288 * 120.00003 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99938 * 180.02562 * 8 7 6 11 11 C 1.46942 * 120.84525 * 0.02562 * 10 8 7 12 12 C 1.53146 * 109.02395 * 233.99703 * 11 10 8 13 13 C 1.53115 * 109.47976 * 305.92974 * 12 11 10 14 14 C 1.52847 * 109.35162 * 60.64162 * 13 12 11 15 15 H 1.09009 * 108.58861 * 57.12496 * 14 13 12 16 16 C 1.52767 * 110.21345 * 176.76526 * 14 13 12 17 17 N 1.46884 * 109.19742 * 67.36564 * 16 14 13 18 18 C 1.36933 * 120.77733 * 233.31946 * 17 16 14 19 19 H 1.07998 * 119.99597 * 27.58266 * 18 17 16 20 20 C 1.38809 * 120.00136 * 207.58335 * 18 17 16 21 21 N 1.31618 * 120.00375 * 18.01712 * 20 18 17 22 22 Si 1.86813 * 119.99822 * 198.02244 * 20 18 17 23 23 H 1.48502 * 109.46404 * 265.35744 * 22 20 18 24 24 H 1.48495 * 109.47049 * 25.35706 * 22 20 18 25 25 H 1.48494 * 109.46964 * 145.36076 * 22 20 18 26 26 C 1.46986 * 118.45350 * 53.59059 * 17 16 14 27 27 C 1.53537 * 108.38066 * 305.39123 * 26 17 16 28 28 C 1.47311 * 120.84295 * 179.97438 * 10 8 7 29 29 H 1.09004 * 110.07215 * 4.94828 * 28 10 8 30 30 H 1.08996 * 109.46881 * 300.00221 * 1 2 3 31 31 H 1.08998 * 109.46449 * 60.00121 * 1 2 3 32 32 H 1.09003 * 109.46722 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47593 * 59.99749 * 3 2 1 34 34 H 1.09005 * 109.46793 * 299.99829 * 3 2 1 35 35 H 1.08999 * 109.46364 * 304.99546 * 4 3 2 36 36 H 1.08999 * 109.46952 * 185.00287 * 4 3 2 37 37 H 1.08999 * 109.46949 * 59.99970 * 6 5 4 38 38 H 1.09000 * 109.46750 * 300.00393 * 6 5 4 39 39 H 1.08999 * 109.47260 * 60.00009 * 7 6 5 40 40 H 1.09000 * 109.47410 * 299.99838 * 7 6 5 41 41 H 1.08998 * 109.54620 * 353.86537 * 11 10 8 42 42 H 1.09006 * 109.54652 * 114.04575 * 11 10 8 43 43 H 1.09004 * 109.46258 * 65.92291 * 12 11 10 44 44 H 1.08990 * 109.47187 * 185.92219 * 12 11 10 45 45 H 1.08999 * 109.48615 * 300.67898 * 13 12 11 46 46 H 1.09000 * 109.48844 * 180.60713 * 13 12 11 47 47 H 1.08997 * 109.51874 * 307.44719 * 16 14 13 48 48 H 1.09008 * 109.52004 * 187.28310 * 16 14 13 49 49 H 0.96998 * 119.99869 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.60881 * 65.17153 * 26 17 16 51 51 H 1.08999 * 109.61598 * 185.69366 * 26 17 16 52 52 H 1.08998 * 109.58702 * 295.50128 * 27 26 17 53 53 H 1.09001 * 109.36873 * 175.50534 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 8 3.9650 0.5795 -1.2218 6 6 5.3812 0.4189 -1.3245 7 6 5.7247 -0.2342 -2.6647 8 6 7.2182 -0.4041 -2.7726 9 8 7.9371 -0.0383 -1.8669 10 7 7.7550 -0.9616 -3.8760 11 6 6.9015 -1.4098 -4.9850 12 6 7.2164 -2.8759 -5.2962 13 6 8.7185 -3.0332 -5.5481 14 6 9.4886 -2.6137 -4.2963 15 1 9.1440 -3.2184 -3.4573 16 6 10.9862 -2.8386 -4.4977 17 7 11.4808 -1.9088 -5.5215 18 6 12.1779 -2.3680 -6.6070 19 1 12.0085 -3.3698 -6.9731 20 6 13.1024 -1.5460 -7.2366 21 7 13.5734 -0.4868 -6.6132 22 14 13.6780 -1.9430 -8.9689 23 1 14.9377 -2.7267 -8.9044 24 1 12.6357 -2.7377 -9.6669 25 1 13.9183 -0.6802 -9.7123 26 6 11.2154 -0.4733 -5.3507 27 6 9.7030 -0.2786 -5.1711 28 6 9.2124 -1.1361 -4.0013 29 1 9.7055 -0.8409 -3.0751 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8515 0.5682 0.8410 36 1 3.9786 2.1764 0.0890 37 1 5.7351 -0.2135 -0.5103 38 1 5.8629 1.3947 -1.2622 39 1 5.3708 0.3986 -3.4786 40 1 5.2430 -1.2100 -2.7274 41 1 5.8537 -1.3143 -4.7005 42 1 7.0973 -0.7985 -5.8660 43 1 6.9228 -3.4979 -4.4506 44 1 6.6648 -3.1855 -6.1838 45 1 9.0147 -2.4021 -6.3859 46 1 8.9412 -4.0747 -5.7802 47 1 11.1599 -3.8644 -4.8229 48 1 11.5109 -2.6596 -3.5591 49 1 14.2191 0.0878 -7.0534 50 1 11.7415 -0.1063 -4.4694 51 1 11.5532 0.0689 -6.2339 52 1 9.1854 -0.5775 -6.0826 53 1 9.4958 0.7712 -4.9634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690320752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -128.839250 kcal Electronic energy + Delta-G solvation = -30878.169580 eV Core-core repulsion = 26749.620432 eV Total energy + Delta-G solvation = -4128.549148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68184 -39.78904 -39.23126 -38.10585 -37.09818 -34.56387 -33.73852 -33.13202 -31.74738 -31.23319 -30.50877 -27.33864 -27.11649 -26.46469 -24.87430 -23.62139 -23.50329 -23.48268 -22.76799 -20.25687 -19.34982 -18.58823 -18.41972 -17.83492 -17.50938 -17.16530 -16.87481 -16.66707 -16.23524 -16.14762 -16.03749 -15.89722 -15.42869 -15.06477 -15.04991 -14.65593 -14.54605 -14.27836 -14.11007 -13.80420 -13.76269 -13.55315 -13.17156 -13.04527 -12.97105 -12.62266 -12.61428 -12.45004 -12.36467 -12.25475 -12.15298 -12.00228 -11.95499 -11.83148 -11.72249 -11.42208 -11.35940 -11.04711 -10.76261 -10.65173 -10.59070 -10.53507 -9.54511 -8.68814 -7.85993 -5.30124 1.47811 1.49646 1.59474 1.59621 1.84802 2.52704 2.70161 2.88493 3.29832 3.56774 3.64652 3.79159 3.94270 3.98117 4.00431 4.04803 4.13954 4.16344 4.24421 4.27948 4.39309 4.44895 4.46175 4.49669 4.54879 4.59337 4.60850 4.62849 4.70936 4.71732 4.80943 4.82619 4.86291 4.89614 4.89905 4.93232 4.95675 5.01400 5.08831 5.16914 5.26677 5.37850 5.41958 5.60210 5.62640 5.66114 5.73362 6.12347 6.28477 6.39375 6.48555 7.14458 7.14667 7.85154 8.39437 9.21147 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.002053 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.141258 B =13638.248449 C =14014.904223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.062 3.938 4 C 0.056 3.944 5 O -0.395 6.395 6 C 0.082 3.918 7 C -0.125 4.125 8 C 0.513 3.487 9 O -0.593 6.593 10 N -0.602 5.602 11 C 0.099 3.901 12 C -0.125 4.125 13 C -0.104 4.104 14 C -0.097 4.097 15 H 0.070 0.930 16 C 0.148 3.852 17 N -0.599 5.599 18 C -0.253 4.253 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.289 1.289 24 H -0.266 1.266 25 H -0.295 1.295 26 C 0.181 3.819 27 C -0.128 4.128 28 C 0.162 3.838 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.002 0.998 49 H 0.249 0.751 50 H -0.013 1.013 51 H 0.061 0.939 52 H 0.073 0.927 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.615 1.019 8.604 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.315 6.315 6 C 0.005 3.995 7 C -0.164 4.164 8 C 0.303 3.697 9 O -0.474 6.474 10 N -0.333 5.333 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.141 4.141 14 C -0.118 4.118 15 H 0.088 0.912 16 C 0.022 3.978 17 N -0.322 5.322 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.794 3.206 23 H -0.216 1.216 24 H -0.190 1.190 25 H -0.222 1.222 26 C 0.054 3.946 27 C -0.168 4.168 28 C 0.058 3.942 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.006 0.994 51 H 0.080 0.920 52 H 0.091 0.909 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.175 1.071 8.861 28.603 hybrid contribution 1.325 0.440 -0.399 1.451 sum -25.851 1.511 8.462 27.242 Atomic orbital electron populations 1.22907 0.79564 1.03662 1.00899 1.87920 1.21410 1.28641 1.95621 1.22691 0.91467 0.85064 1.02220 1.22735 0.94198 0.98368 0.86758 1.87824 1.21759 1.82627 1.39272 1.22011 0.80979 0.99761 0.96740 1.21434 0.90147 1.05262 0.99602 1.20994 0.91364 0.76311 0.81039 1.90684 1.64312 1.52166 1.40278 1.48502 1.07074 1.59625 1.18143 1.22046 0.95354 0.95704 0.89095 1.21900 0.95482 0.95727 1.03141 1.21423 0.94850 1.01173 0.96700 1.21668 0.96421 0.94652 0.99044 0.91208 1.20928 0.92058 0.94112 0.90697 1.44232 1.62893 1.02079 1.23038 1.19485 1.14457 1.00037 1.04281 0.91129 1.25790 0.97249 0.99010 1.02783 1.70205 1.32331 1.18658 1.37230 0.85285 0.78102 0.76700 0.80501 1.21635 1.19012 1.22168 1.20601 0.90532 0.85220 0.98231 1.22357 0.98012 0.98115 0.98292 1.20961 0.79938 0.95525 0.97728 0.91890 0.92764 0.93306 0.89045 0.89414 0.91943 0.92717 0.89962 0.93600 0.93117 0.86032 0.86087 0.86550 0.90885 0.91077 0.88356 0.92468 0.91934 0.91968 0.98002 0.94227 0.99449 0.92047 0.90864 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.51 10.67 -144.34 -1.54 -9.05 16 3 C 0.06 0.83 6.32 71.98 0.45 1.28 16 4 C 0.06 0.89 6.32 71.98 0.45 1.35 16 5 O -0.40 -8.29 10.31 -144.34 -1.49 -9.78 16 6 C 0.08 1.79 5.23 71.98 0.38 2.16 16 7 C -0.13 -2.45 4.42 29.85 0.13 -2.32 16 8 C 0.51 14.67 7.71 87.66 0.68 15.34 16 9 O -0.59 -22.34 15.43 -3.05 -0.05 -22.39 16 10 N -0.60 -16.73 2.66 -793.92 -2.11 -18.84 16 11 C 0.10 1.96 5.85 86.34 0.51 2.46 16 12 C -0.12 -2.46 6.08 30.68 0.19 -2.28 16 13 C -0.10 -2.98 4.86 30.58 0.15 -2.83 16 14 C -0.10 -3.28 2.45 -10.86 -0.03 -3.31 16 15 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 16 C 0.15 6.24 5.90 86.23 0.51 6.75 16 17 N -0.60 -29.80 2.64 -699.20 -1.84 -31.65 16 18 C -0.25 -13.59 9.60 84.03 0.81 -12.79 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 20 C -0.05 -2.96 4.90 84.86 0.42 -2.54 16 21 N -0.94 -55.94 11.20 21.65 0.24 -55.69 16 22 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.18 8.94 5.37 86.47 0.46 9.40 16 27 C -0.13 -4.96 5.03 30.81 0.16 -4.81 16 28 C 0.16 5.75 2.65 44.94 0.12 5.87 16 29 H 0.06 2.65 7.06 -2.38 -0.02 2.63 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.12 1.89 7.94 -2.39 -0.02 1.87 16 40 H 0.12 1.92 7.71 -2.39 -0.02 1.90 16 41 H 0.12 1.49 5.96 -2.39 -0.01 1.48 16 42 H 0.07 1.47 7.26 -2.38 -0.02 1.45 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.94 6.15 -2.39 -0.01 1.92 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 48 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 51 H 0.06 3.40 6.01 -2.39 -0.01 3.38 16 52 H 0.07 2.70 5.33 -2.39 -0.01 2.69 16 53 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -72.56 405.26 2.74 -69.82 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.87 Total: 15.80 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.63 Total: 15.26 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.71 Total: -106.18 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -3.07 Total: -41.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.56 2.74 -69.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690320752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.019 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds