Wall clock time and date at job start Sat Apr 11 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00455 * 2 1 4 4 C 1.53002 * 109.47493 * 184.58614 * 3 2 1 5 5 C 1.50706 * 112.90534 * 48.40866 * 4 3 2 6 6 O 1.21276 * 119.99714 * 247.43868 * 5 4 3 7 7 N 1.34775 * 119.99984 * 67.43881 * 5 4 3 8 8 C 1.46926 * 120.63120 * 4.84386 * 7 5 4 9 9 C 1.53190 * 108.77722 * 126.36678 * 8 7 5 10 10 C 1.53042 * 109.30984 * 54.63459 * 9 8 7 11 11 C 1.53037 * 109.53873 * 298.63480 * 10 9 8 12 12 H 1.09001 * 109.49756 * 301.38399 * 11 10 9 13 13 N 1.46501 * 109.49899 * 181.32079 * 11 10 9 14 14 C 1.36937 * 119.99832 * 299.99583 * 13 11 10 15 15 H 1.08002 * 120.00168 * 324.33698 * 14 13 11 16 16 C 1.38815 * 119.99782 * 144.32238 * 14 13 11 17 17 N 1.31613 * 120.00530 * 337.43082 * 16 14 13 18 18 Si 1.86804 * 119.99724 * 157.42468 * 16 14 13 19 19 H 1.48500 * 109.47053 * 90.00329 * 18 16 14 20 20 H 1.48493 * 109.47427 * 210.00432 * 18 16 14 21 21 H 1.48508 * 109.47181 * 330.00548 * 18 16 14 22 22 C 1.46497 * 120.00284 * 120.00117 * 13 11 10 23 23 C 1.53001 * 109.47410 * 84.37294 * 22 13 11 24 24 O 1.42902 * 109.46733 * 65.00235 * 23 22 13 25 25 C 1.46924 * 120.62718 * 184.56259 * 7 5 4 26 26 C 1.53774 * 113.61596 * 179.66105 * 4 3 2 27 27 C 1.53782 * 87.17417 * 139.93957 * 26 4 3 28 28 C 1.53774 * 113.61388 * 277.15975 * 4 3 2 29 29 H 1.08992 * 109.47132 * 55.38760 * 1 2 3 30 30 H 1.08998 * 109.47540 * 175.39620 * 1 2 3 31 31 H 1.09005 * 109.46595 * 295.39227 * 1 2 3 32 32 H 1.08999 * 109.47660 * 64.57872 * 3 2 1 33 33 H 1.09004 * 109.46756 * 304.58789 * 3 2 1 34 34 H 1.09002 * 109.58697 * 246.15519 * 8 7 5 35 35 H 1.09001 * 109.58631 * 6.57962 * 8 7 5 36 36 H 1.09001 * 109.49676 * 174.58696 * 9 8 7 37 37 H 1.08998 * 109.49531 * 294.68600 * 9 8 7 38 38 H 1.09001 * 109.45997 * 58.65603 * 10 9 8 39 39 H 1.09000 * 109.45656 * 178.61618 * 10 9 8 40 40 H 0.96995 * 120.00211 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46911 * 204.37892 * 22 13 11 42 42 H 1.09005 * 109.46700 * 324.37083 * 22 13 11 43 43 H 1.09001 * 109.46979 * 185.00356 * 23 22 13 44 44 H 1.09002 * 109.46863 * 304.99835 * 23 22 13 45 45 H 0.96700 * 113.99477 * 180.02562 * 24 23 22 46 46 H 1.08990 * 109.58946 * 353.41635 * 25 7 5 47 47 H 1.09003 * 109.58637 * 113.84595 * 25 7 5 48 48 H 1.09000 * 113.61693 * 254.53020 * 26 4 3 49 49 H 1.09003 * 113.61314 * 25.34430 * 26 4 3 50 50 H 1.08994 * 113.61163 * 89.15895 * 27 26 4 51 51 H 1.09007 * 113.61213 * 220.06215 * 27 26 4 52 52 H 1.09006 * 113.61550 * 334.56210 * 28 4 3 53 53 H 1.09001 * 113.61724 * 105.38361 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5313 1.1864 -0.1153 5 6 3.9649 0.2563 -1.2191 6 8 4.5143 -0.7906 -0.9489 7 7 3.7421 0.5880 -2.5062 8 6 3.1745 1.8977 -2.8543 9 6 4.0919 2.5769 -3.8760 10 6 4.2974 1.6432 -5.0710 11 6 4.9702 0.3514 -4.6015 12 1 5.9252 0.5883 -4.1324 13 7 5.1951 -0.5286 -5.7509 14 6 4.1334 -0.9622 -6.4993 15 1 3.1896 -1.1809 -6.0218 16 6 4.2701 -1.1204 -7.8716 17 7 5.2103 -0.4655 -8.5192 18 14 3.1196 -2.2629 -8.7992 19 1 1.9288 -1.5023 -9.2559 20 1 3.8267 -2.8288 -9.9760 21 1 2.6887 -3.3659 -7.9031 22 6 6.5556 -0.9449 -6.0998 23 6 6.9477 -2.1623 -5.2600 24 8 6.1131 -3.2691 -5.6072 25 6 4.0680 -0.3509 -3.5883 26 6 4.2558 2.5427 -0.1325 27 6 5.3260 1.8964 0.7629 28 6 4.2317 0.9181 1.2271 29 1 -0.3633 0.5837 -0.8457 30 1 -0.3634 -1.0243 -0.0825 31 1 -0.3633 0.4407 0.9285 32 1 1.7552 1.8168 0.9281 33 1 1.6251 1.8746 -0.8461 34 1 2.1829 1.7631 -3.2864 35 1 3.1044 2.5153 -1.9588 36 1 3.6340 3.5063 -4.2148 37 1 5.0549 2.7928 -3.4132 38 1 3.3316 1.4079 -5.5182 39 1 4.9300 2.1340 -5.8107 40 1 5.3060 -0.5763 -9.4780 41 1 6.5961 -1.2047 -7.1576 42 1 7.2482 -0.1272 -5.8998 43 1 7.9894 -2.4176 -5.4545 44 1 6.8220 -1.9299 -4.2025 45 1 6.3056 -4.0772 -5.1123 46 1 4.5872 -1.2164 -3.1771 47 1 3.1507 -0.6727 -4.0815 48 1 4.6249 2.8282 -1.1176 49 1 3.6995 3.3411 0.3587 50 1 6.1312 1.4183 0.2051 51 1 5.6892 2.5537 1.5530 52 1 3.6696 1.2720 2.0913 53 1 4.5802 -0.1085 1.3403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692040926.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:14 Heat of formation + Delta-G solvation = -100.387641 kcal Electronic energy + Delta-G solvation = -32906.560529 eV Core-core repulsion = 28779.245136 eV Total energy + Delta-G solvation = -4127.315393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09745 -39.71617 -38.61968 -37.98459 -37.67780 -36.29776 -33.80297 -32.93095 -31.46643 -30.26552 -29.08857 -27.27351 -26.72687 -26.46912 -25.89831 -24.22100 -23.60942 -22.55430 -21.88135 -21.02153 -19.31681 -18.35914 -18.26240 -17.82410 -17.33410 -17.15414 -16.81242 -16.67594 -16.37340 -16.14913 -15.84126 -15.71478 -15.35516 -15.09637 -14.75570 -14.53190 -14.42937 -14.17477 -13.97051 -13.71554 -13.58973 -13.50794 -13.27493 -13.11834 -12.84924 -12.73486 -12.68545 -12.48295 -12.34018 -12.24380 -11.98434 -11.84797 -11.75258 -11.63859 -11.58926 -11.33910 -11.27116 -11.19219 -10.79361 -10.71341 -10.46523 -10.40941 -9.63594 -8.49978 -7.78163 -5.31358 1.42584 1.47500 1.57562 1.67116 1.99439 2.56147 2.75930 3.33191 3.34500 3.48949 3.59362 3.72546 3.74626 3.86631 3.95683 4.06039 4.11589 4.14919 4.29523 4.35791 4.39676 4.45391 4.48311 4.51706 4.55156 4.62926 4.64014 4.64988 4.77313 4.79416 4.81091 4.84710 4.85638 4.89020 4.97064 4.99846 5.02161 5.10602 5.16699 5.18318 5.22014 5.45507 5.45718 5.56249 5.63656 5.71096 5.78462 6.24244 6.50913 6.54530 7.10432 7.22804 7.24495 7.91424 8.42340 9.21227 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.003675 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.686907 B = 7616.471173 C = 7985.498397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.422 6.422 3 C 0.076 3.924 4 C -0.112 4.112 5 C 0.540 3.460 6 O -0.592 6.592 7 N -0.601 5.601 8 C 0.099 3.901 9 C -0.122 4.122 10 C -0.111 4.111 11 C 0.169 3.831 12 H 0.047 0.953 13 N -0.582 5.582 14 C -0.229 4.229 15 H 0.043 0.957 16 C -0.027 4.027 17 N -0.917 5.917 18 Si 0.944 3.056 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.285 1.285 22 C 0.142 3.858 23 C 0.067 3.933 24 O -0.573 6.573 25 C 0.124 3.876 26 C -0.114 4.114 27 C -0.139 4.139 28 C -0.115 4.115 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.248 0.752 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.023 0.977 45 H 0.374 0.626 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.135 0.865 50 H 0.053 0.947 51 H 0.101 0.899 52 H 0.117 0.883 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 11.511 19.744 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.342 6.342 3 C 0.000 4.000 4 C -0.115 4.115 5 C 0.330 3.670 6 O -0.473 6.473 7 N -0.333 5.333 8 C -0.023 4.023 9 C -0.161 4.161 10 C -0.151 4.151 11 C 0.061 3.939 12 H 0.065 0.935 13 N -0.302 5.302 14 C -0.359 4.359 15 H 0.061 0.939 16 C -0.224 4.224 17 N -0.562 5.562 18 Si 0.773 3.227 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.210 1.210 22 C 0.016 3.984 23 C -0.012 4.012 24 O -0.378 6.378 25 C 0.000 4.000 26 C -0.151 4.151 27 C -0.177 4.177 28 C -0.153 4.153 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.220 0.780 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.154 0.846 50 H 0.072 0.928 51 H 0.119 0.881 52 H 0.135 0.865 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.696 11.251 19.271 22.804 hybrid contribution -0.261 -1.713 -0.864 1.936 sum -4.957 9.538 18.407 21.315 Atomic orbital electron populations 1.22876 0.79491 1.03153 1.01287 1.87970 1.21492 1.29050 1.95642 1.22757 0.89548 0.84869 1.02844 1.22106 0.95841 0.98224 0.95358 1.20450 0.76874 0.86262 0.83412 1.90614 1.45102 1.28008 1.83547 1.48143 1.62450 1.17657 1.05064 1.22240 0.96808 0.82631 1.00583 1.21926 1.00444 0.98731 0.94979 1.21742 1.00332 0.95607 0.97387 1.20604 0.95519 0.90164 0.87576 0.93462 1.43806 1.02736 1.53339 1.30307 1.18750 0.92531 1.36736 0.87900 0.93938 1.25463 0.99557 1.00153 0.97184 1.70098 1.37099 1.41754 1.07248 0.85664 0.78981 0.80068 0.77948 1.20968 1.22086 1.21042 1.20962 0.85230 0.91866 1.00387 1.22898 0.92213 0.88757 0.97373 1.86740 1.62016 1.22297 1.66741 1.21642 0.98947 0.92199 0.87258 1.23225 0.96439 0.93606 1.01833 1.22823 0.96227 0.98431 1.00180 1.22941 0.97319 1.00014 0.95013 0.93162 0.90187 0.91880 0.88988 0.91242 0.91382 0.86056 0.88063 0.91164 0.93575 0.93895 0.94328 0.91070 0.93729 0.93300 0.95829 0.77991 0.93214 0.93614 0.90084 0.84645 0.92809 0.88060 0.86513 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -10.84 10.16 -148.98 -1.51 -12.35 16 3 C 0.08 1.37 5.09 71.98 0.37 1.74 16 4 C -0.11 -2.47 0.52 -52.40 -0.03 -2.49 16 5 C 0.54 18.21 5.89 87.66 0.52 18.72 16 6 O -0.59 -25.97 15.38 -3.02 -0.05 -26.02 16 7 N -0.60 -19.75 2.98 -819.75 -2.44 -22.19 16 8 C 0.10 2.33 4.66 86.36 0.40 2.73 16 9 C -0.12 -3.03 5.99 30.67 0.18 -2.84 16 10 C -0.11 -4.15 5.12 30.62 0.16 -3.99 16 11 C 0.17 7.14 2.77 44.92 0.12 7.27 16 12 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 13 N -0.58 -29.18 2.34 -678.39 -1.59 -30.76 16 14 C -0.23 -12.69 8.03 84.03 0.68 -12.01 16 15 H 0.04 2.44 6.74 -2.91 -0.02 2.42 16 16 C -0.03 -1.54 4.88 84.86 0.41 -1.12 16 17 N -0.92 -53.94 11.50 21.65 0.25 -53.69 16 18 Si 0.94 47.08 29.61 68.60 2.03 49.11 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 21 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 22 C 0.14 6.92 5.57 86.38 0.48 7.40 16 23 C 0.07 2.84 7.39 71.98 0.53 3.38 16 24 O -0.57 -25.71 13.40 -148.98 -2.00 -27.71 16 25 C 0.12 5.20 5.75 86.22 0.50 5.70 16 26 C -0.11 -1.61 5.80 31.12 0.18 -1.43 16 27 C -0.14 -2.43 7.82 31.18 0.24 -2.18 16 28 C -0.12 -2.38 7.10 31.18 0.22 -2.16 16 29 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 1.04 7.94 -2.39 -0.02 1.03 16 33 H 0.07 1.04 6.38 -2.38 -0.02 1.02 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.12 1.95 3.46 -2.39 -0.01 1.94 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.64 7.92 -2.39 -0.02 1.62 16 38 H 0.05 1.91 7.70 -2.39 -0.02 1.89 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 4.00 5.50 -2.39 -0.01 3.99 16 42 H 0.04 2.03 8.04 -2.38 -0.02 2.01 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.37 12.52 9.12 -74.06 -0.68 11.85 16 46 H 0.05 2.38 7.00 -2.39 -0.02 2.37 16 47 H 0.05 2.10 6.77 -2.39 -0.02 2.08 16 48 H 0.08 1.22 6.11 -2.39 -0.01 1.21 16 49 H 0.14 0.84 8.10 -2.39 -0.02 0.82 16 50 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.12 1.65 7.96 -2.38 -0.02 1.63 16 53 H 0.05 1.34 7.35 -2.39 -0.02 1.32 16 Total: -1.00 -78.98 403.73 1.14 -77.84 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.23 Total: 25.34 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 6.21 Total: 20.43 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.78 Total: -106.64 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -3.56 Total: -66.08 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.98 1.14 -77.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692040926.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.546 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds