Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47516 * 2 1 4 4 C 1.42892 * 114.00151 * 184.82650 * 3 2 1 5 5 H 1.09004 * 109.47568 * 32.09658 * 4 3 2 6 6 C 1.50702 * 109.47200 * 272.09768 * 4 3 2 7 7 O 1.21279 * 119.99801 * 359.97438 * 6 4 3 8 8 N 1.34783 * 119.99909 * 180.02562 * 6 4 3 9 9 C 1.46502 * 119.99449 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46739 * 175.13568 * 9 8 6 11 11 N 1.46502 * 110.01847 * 54.47200 * 10 9 8 12 12 C 1.36941 * 119.99851 * 63.93582 * 11 10 9 13 13 H 1.07991 * 119.99862 * 354.81647 * 12 11 10 14 14 C 1.38811 * 119.99841 * 174.80851 * 12 11 10 15 15 N 1.31624 * 119.99853 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47310 * 90.00123 * 16 14 12 18 18 H 1.48507 * 109.47078 * 210.00097 * 16 14 12 19 19 H 1.48498 * 109.46958 * 329.99906 * 16 14 12 20 20 C 1.54266 * 110.03444 * 293.08409 * 10 9 8 21 21 C 1.54968 * 104.15930 * 217.13883 * 20 10 9 22 22 C 1.54891 * 102.77648 * 37.88184 * 21 20 10 23 23 C 1.53869 * 110.03373 * 175.86102 * 10 9 8 24 24 C 1.53005 * 109.47337 * 152.09688 * 4 3 2 25 25 H 1.08992 * 110.75313 * 178.03827 * 24 4 3 26 26 C 1.55312 * 110.84353 * 301.73060 * 24 4 3 27 27 C 1.54941 * 100.93879 * 152.32080 * 26 24 4 28 28 O 1.43644 * 105.13854 * 323.55338 * 27 26 24 29 29 C 1.43235 * 109.97016 * 24.42757 * 28 27 26 30 30 H 1.08999 * 109.46505 * 299.99877 * 1 2 3 31 31 H 1.08995 * 109.46950 * 59.99574 * 1 2 3 32 32 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47295 * 239.99644 * 2 1 3 34 34 H 1.09003 * 109.47470 * 120.00037 * 2 1 3 35 35 H 0.96996 * 119.99967 * 359.71729 * 8 6 4 36 36 H 1.08998 * 109.46918 * 295.13146 * 9 8 6 37 37 H 1.08999 * 109.47371 * 55.14103 * 9 8 6 38 38 H 0.97000 * 119.99997 * 243.94308 * 11 10 9 39 39 H 0.97006 * 119.99708 * 180.02562 * 15 14 12 40 40 H 1.09007 * 110.48291 * 335.78160 * 20 10 9 41 41 H 1.08995 * 110.49065 * 98.42728 * 20 10 9 42 42 H 1.09004 * 110.71617 * 279.56979 * 21 20 10 43 43 H 1.08995 * 110.92197 * 156.29384 * 21 20 10 44 44 H 1.09003 * 110.48025 * 203.40563 * 22 21 20 45 45 H 1.08998 * 110.59817 * 80.82355 * 22 21 20 46 46 H 1.08995 * 110.03458 * 238.57219 * 23 10 9 47 47 H 1.09004 * 110.03322 * 359.95584 * 23 10 9 48 48 H 1.08998 * 111.12574 * 270.23805 * 26 24 4 49 49 H 1.08999 * 111.12568 * 34.40496 * 26 24 4 50 50 H 1.09003 * 110.31097 * 204.63731 * 27 26 24 51 51 H 1.08998 * 110.39411 * 82.51328 * 27 26 24 52 52 H 1.08996 * 109.83335 * 238.77506 * 29 28 27 53 53 H 1.09008 * 109.90336 * 117.84530 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4265 1.4616 -0.1098 5 1 3.8119 0.6385 -0.7117 6 6 4.0425 1.4101 1.2646 7 8 3.3349 1.2881 2.2420 8 7 5.3796 1.5008 1.4077 9 6 5.9782 1.4513 2.7439 10 6 7.5032 1.4520 2.6198 11 7 7.9409 2.6006 1.8227 12 6 7.7213 3.8734 2.2776 13 1 7.1523 4.0330 3.1815 14 6 8.2301 4.9583 1.5770 15 7 8.9233 4.7637 0.4751 16 14 7.9311 6.6945 2.1979 17 1 9.0303 7.0883 3.1155 18 1 7.8880 7.6314 1.0465 19 1 6.6374 6.7441 2.9252 20 6 7.9806 0.1403 1.9631 21 6 9.3003 -0.1955 2.7028 22 6 8.9912 0.2225 4.1618 23 6 8.1457 1.5047 4.0170 24 6 3.7810 2.7916 -0.7781 25 1 4.8620 2.9160 -0.8412 26 6 3.1252 2.8967 -2.1820 27 6 2.9799 4.4327 -2.3243 28 8 2.6576 4.9028 -1.0058 29 6 3.1347 3.9742 -0.0251 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.9457 1.5950 0.6258 36 1 5.6599 2.3221 3.3171 37 1 5.6556 0.5432 3.2532 38 1 8.3863 2.4595 0.9726 39 1 9.2792 5.5218 -0.0142 40 1 7.2466 -0.6512 2.1145 41 1 8.1662 0.2916 0.8998 42 1 10.1275 0.3894 2.3004 43 1 9.5188 -1.2617 2.6444 44 1 9.9143 0.4331 4.7019 45 1 8.4213 -0.5548 4.6708 46 1 8.7838 2.3843 4.1016 47 1 7.3711 1.5305 4.7835 48 1 3.7802 2.4910 -2.9530 49 1 2.1516 2.4068 -2.1985 50 1 2.1753 4.6739 -3.0191 51 1 3.9172 4.8731 -2.6643 52 1 2.3024 3.6162 0.5809 53 1 3.8759 4.4560 0.6125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698799913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -149.220445 kcal Electronic energy + Delta-G solvation = -32421.091285 eV Core-core repulsion = 28291.658342 eV Total energy + Delta-G solvation = -4129.432943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55259 -40.25906 -39.54265 -38.33604 -35.59705 -35.17337 -34.21375 -32.39035 -31.87341 -30.61785 -29.62661 -29.50142 -27.59344 -25.83207 -24.75019 -23.77386 -23.53164 -22.27898 -21.63945 -20.94923 -20.12918 -19.04750 -18.51050 -18.13325 -17.58015 -17.23530 -16.92474 -16.50092 -16.26666 -16.02765 -15.82253 -15.68241 -15.62946 -15.08844 -14.95960 -14.70117 -14.40032 -14.23099 -14.01641 -13.85537 -13.44030 -13.26026 -13.18115 -12.89755 -12.83760 -12.69544 -12.62143 -12.41197 -12.31532 -12.28533 -12.05993 -11.84235 -11.83432 -11.78996 -11.75383 -11.54464 -11.43131 -11.37039 -11.29942 -10.91326 -10.54468 -10.23964 -9.94345 -8.95139 -7.91723 -5.16077 1.41744 1.46043 1.50189 1.55218 2.17407 2.55247 2.65246 2.89759 3.30853 3.39897 3.59611 3.75182 3.80085 3.85704 3.87039 3.97605 4.11087 4.15278 4.21280 4.25371 4.27581 4.37733 4.43504 4.44832 4.50974 4.57209 4.69172 4.71494 4.76871 4.79174 4.83994 4.86544 4.90386 4.94586 4.96575 5.02557 5.06124 5.14805 5.20257 5.23775 5.27135 5.28222 5.41445 5.45114 5.55578 5.64535 5.69818 5.99138 6.06893 6.32828 6.64321 7.26709 7.41083 8.13483 8.39399 9.30270 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.004690 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.919915 B = 5968.662429 C = 8156.968325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.097 3.903 5 H 0.126 0.874 6 C 0.481 3.519 7 O -0.579 6.579 8 N -0.693 5.693 9 C 0.126 3.874 10 C 0.185 3.815 11 N -0.712 5.712 12 C -0.212 4.212 13 H 0.058 0.942 14 C -0.054 4.054 15 N -0.955 5.955 16 Si 0.940 3.060 17 H -0.290 1.290 18 H -0.298 1.298 19 H -0.286 1.286 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.111 4.111 25 H 0.104 0.896 26 C -0.130 4.130 27 C 0.040 3.960 28 O -0.409 6.409 29 C 0.063 3.937 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.408 0.592 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.378 0.622 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.061 0.939 52 H 0.064 0.936 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 -14.843 -6.131 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.288 6.288 4 C 0.035 3.965 5 H 0.143 0.857 6 C 0.267 3.733 7 O -0.459 6.459 8 N -0.344 5.344 9 C 0.000 4.000 10 C 0.094 3.906 11 N -0.352 5.352 12 C -0.345 4.345 13 H 0.076 0.924 14 C -0.248 4.248 15 N -0.605 5.605 16 Si 0.772 3.228 17 H -0.218 1.218 18 H -0.225 1.225 19 H -0.212 1.212 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.171 4.171 24 C -0.130 4.130 25 H 0.122 0.878 26 C -0.168 4.168 27 C -0.035 4.035 28 O -0.329 6.329 29 C -0.014 4.014 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.244 0.756 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.133 0.867 49 H 0.113 0.887 50 H 0.123 0.877 51 H 0.079 0.921 52 H 0.082 0.918 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.712 -14.428 -5.272 18.174 hybrid contribution 0.751 1.527 0.261 1.722 sum -8.961 -12.901 -5.011 16.488 Atomic orbital electron populations 1.21717 0.92540 1.03408 1.02527 1.22784 0.96704 0.82575 1.00701 1.87977 1.18347 1.28335 1.94119 1.21795 0.83312 0.99852 0.91541 0.85698 1.21839 0.82594 0.76108 0.92759 1.90650 1.62007 1.51321 1.41966 1.45807 1.06360 1.72004 1.10278 1.21796 0.95198 0.99331 0.83713 1.20686 0.89694 0.88257 0.91932 1.42565 1.69886 1.00244 1.22536 1.19146 1.24928 0.84530 1.05851 0.92352 1.25076 1.01515 0.99663 0.98525 1.69725 1.42300 1.29776 1.18745 0.85650 0.77264 0.82992 0.76921 1.21801 1.22471 1.21194 1.22544 0.97810 0.95227 0.99578 1.22404 0.96701 1.01202 0.94902 1.22288 0.99278 0.96364 0.97201 1.22589 0.99015 0.98747 0.96758 1.22825 1.01603 0.91980 0.96588 0.87835 1.23253 1.02906 0.96035 0.94571 1.23628 1.01592 0.94105 0.84222 1.88350 1.80434 1.47533 1.16580 1.22927 0.97599 0.89347 0.91490 0.93581 0.91307 0.88864 0.90548 0.94489 0.75611 0.95604 0.91556 0.78882 0.94283 0.89797 0.91370 0.93057 0.89583 0.91949 0.90318 0.93220 0.92795 0.86721 0.88725 0.87686 0.92091 0.91763 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.98 0.74 -1.78 16 2 C 0.05 1.00 6.41 71.98 0.46 1.46 16 3 O -0.37 -9.97 7.67 -129.94 -1.00 -10.97 16 4 C 0.10 2.47 2.32 29.85 0.07 2.54 16 5 H 0.13 2.24 7.74 -2.39 -0.02 2.22 16 6 C 0.48 15.99 6.69 87.66 0.59 16.58 16 7 O -0.58 -23.82 16.22 16.01 0.26 -23.56 16 8 N -0.69 -22.46 5.12 -463.05 -2.37 -24.84 16 9 C 0.13 4.45 4.08 86.38 0.35 4.80 16 10 C 0.19 6.32 0.68 4.33 0.00 6.32 16 11 N -0.71 -30.68 4.50 -300.08 -1.35 -32.03 16 12 C -0.21 -10.83 8.44 84.03 0.71 -10.13 16 13 H 0.06 3.08 7.42 -2.92 -0.02 3.06 16 14 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 15 N -0.95 -54.01 13.06 21.65 0.28 -53.72 16 16 Si 0.94 46.19 29.55 68.60 2.03 48.22 16 17 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 18 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 C -0.11 -3.03 5.77 31.70 0.18 -2.85 16 21 C -0.11 -2.86 6.91 31.91 0.22 -2.64 16 22 C -0.11 -2.94 6.83 31.67 0.22 -2.73 16 23 C -0.13 -4.41 5.90 31.32 0.18 -4.23 16 24 C -0.11 -2.97 2.80 -9.53 -0.03 -2.99 16 25 H 0.10 2.89 7.60 -2.39 -0.02 2.87 16 26 C -0.13 -2.61 6.55 32.05 0.21 -2.40 16 27 C 0.04 0.98 7.78 72.65 0.56 1.54 16 28 O -0.41 -14.08 11.36 -148.98 -1.69 -15.77 16 29 C 0.06 2.21 6.81 72.45 0.49 2.70 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.11 7.97 -2.39 -0.02 1.09 16 34 H 0.04 0.89 7.96 -2.39 -0.02 0.87 16 35 H 0.41 12.43 7.44 -92.71 -0.69 11.74 16 36 H 0.03 1.09 7.63 -2.39 -0.02 1.07 16 37 H 0.07 2.19 8.02 -2.39 -0.02 2.17 16 38 H 0.38 17.29 7.44 -92.71 -0.69 16.60 16 39 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 40 H 0.08 1.92 7.78 -2.38 -0.02 1.91 16 41 H 0.07 1.82 7.70 -2.39 -0.02 1.80 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 46 H 0.05 2.00 7.27 -2.39 -0.02 1.98 16 47 H 0.05 1.75 7.67 -2.38 -0.02 1.73 16 48 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.09 1.79 7.37 -2.39 -0.02 1.77 16 50 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.06 2.42 7.04 -2.39 -0.02 2.40 16 53 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -68.39 414.47 1.11 -67.27 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.48 Total: 41.68 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.43 Total: 3.71 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.44 Total: -110.58 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.43 Total: -50.30 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.39 1.11 -67.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698799913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.947 kcal (2) G-P(sol) polarization free energy of solvation -68.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds