Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47017 * 2 1 4 4 C 1.42908 * 113.99938 * 184.94043 * 3 2 1 5 5 H 1.09000 * 109.47091 * 33.71515 * 4 3 2 6 6 C 1.50691 * 109.46750 * 153.71713 * 4 3 2 7 7 O 1.21279 * 120.00408 * 13.67416 * 6 4 3 8 8 N 1.34779 * 119.99645 * 193.67606 * 6 4 3 9 9 C 1.46503 * 120.00151 * 184.42855 * 8 6 4 10 10 C 1.53004 * 109.47281 * 185.26509 * 9 8 6 11 11 N 1.46495 * 110.43406 * 56.88988 * 10 9 8 12 12 C 1.36943 * 120.00023 * 63.45086 * 11 10 9 13 13 H 1.07998 * 119.99880 * 355.11307 * 12 11 10 14 14 C 1.38811 * 119.99811 * 175.11381 * 12 11 10 15 15 N 1.31616 * 120.00550 * 5.16355 * 14 12 11 16 16 Si 1.86807 * 119.99723 * 185.16117 * 14 12 11 17 17 H 1.48496 * 109.47073 * 84.99461 * 16 14 12 18 18 H 1.48492 * 109.47048 * 204.99423 * 16 14 12 19 19 H 1.48500 * 109.47150 * 324.99339 * 16 14 12 20 20 C 1.54887 * 110.48523 * 179.43403 * 10 9 8 21 21 C 1.55238 * 102.58658 * 156.67479 * 20 10 9 22 22 C 1.54262 * 104.22957 * 322.08243 * 21 20 10 23 23 C 1.53871 * 106.60068 * 23.61023 * 22 21 20 24 24 C 1.52997 * 109.46981 * 273.71446 * 4 3 2 25 25 H 1.09007 * 110.45902 * 51.43431 * 24 4 3 26 26 C 1.54515 * 110.50891 * 174.03383 * 24 4 3 27 27 C 1.54482 * 104.06071 * 118.64792 * 26 24 4 28 28 O 1.44425 * 104.80625 * 23.97671 * 27 26 24 29 29 C 1.44426 * 105.27360 * 319.49079 * 28 27 26 30 30 H 1.09000 * 109.46979 * 60.00040 * 1 2 3 31 31 H 1.08998 * 109.47367 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47204 * 299.99668 * 1 2 3 33 33 H 1.08997 * 109.47267 * 239.99783 * 2 1 3 34 34 H 1.09000 * 109.46979 * 119.99960 * 2 1 3 35 35 H 0.97000 * 120.00162 * 4.42396 * 8 6 4 36 36 H 1.08998 * 109.47598 * 65.25967 * 9 8 6 37 37 H 1.09002 * 109.46751 * 305.26112 * 9 8 6 38 38 H 0.97000 * 120.00425 * 243.72097 * 11 10 9 39 39 H 0.96998 * 120.00259 * 180.02562 * 15 14 12 40 40 H 1.09003 * 110.75712 * 275.06449 * 20 10 9 41 41 H 1.09002 * 110.75861 * 38.43510 * 20 10 9 42 42 H 1.08999 * 110.46671 * 203.39116 * 21 20 10 43 43 H 1.09001 * 110.58459 * 80.82982 * 21 20 10 44 44 H 1.09002 * 110.03125 * 264.32523 * 22 21 20 45 45 H 1.09004 * 110.07387 * 142.92301 * 22 21 20 46 46 H 1.08994 * 110.03462 * 240.71294 * 23 22 21 47 47 H 1.09008 * 110.07229 * 119.30402 * 23 22 21 48 48 H 1.09003 * 110.50841 * 237.29159 * 26 24 4 49 49 H 1.08994 * 110.50890 * 359.86553 * 26 24 4 50 50 H 1.08996 * 110.37192 * 142.81020 * 27 26 24 51 51 H 1.08997 * 110.36859 * 265.03271 * 27 26 24 52 52 H 1.08996 * 110.37237 * 281.67473 * 29 28 27 53 53 H 1.09005 * 110.36763 * 159.34071 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4618 -0.1124 5 1 3.8073 0.6555 -0.7393 6 6 3.7755 2.7893 -0.7341 7 8 2.9336 3.6578 -0.8223 8 7 5.0235 3.0114 -1.1921 9 6 5.3902 4.3328 -1.7075 10 6 6.8081 4.2814 -2.2802 11 7 6.9025 3.2546 -3.3208 12 6 6.1651 3.3731 -4.4687 13 1 5.4556 4.1806 -4.5737 14 6 6.3296 2.4555 -5.4971 15 7 7.1178 1.4147 -5.3307 16 14 5.4321 2.6978 -7.1174 17 1 6.2219 3.6032 -7.9902 18 1 5.2626 1.3851 -7.7905 19 1 4.0984 3.2979 -6.8597 20 6 7.2150 5.6649 -2.8453 21 6 8.7656 5.6064 -2.7993 22 6 9.0779 4.8530 -1.4899 23 6 7.8333 4.0106 -1.1598 24 6 4.0572 1.3682 1.2783 25 1 3.6937 0.4845 1.8029 26 6 5.5985 1.3392 1.1727 27 6 6.0509 2.6029 1.9375 28 8 4.9679 2.8903 2.8487 29 6 3.7608 2.6459 2.0943 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.6788 2.2964 -1.1805 36 1 5.3514 5.0621 -0.8984 37 1 4.6918 4.6234 -2.4923 38 1 7.4843 2.4887 -3.1951 39 1 7.2330 0.7737 -6.0495 40 1 6.8606 5.7834 -3.8693 41 1 6.8395 6.4673 -2.2102 42 1 9.1842 6.6124 -2.7698 43 1 9.1540 5.0576 -3.6572 44 1 9.2710 5.5643 -0.6868 45 1 9.9423 4.2036 -1.6289 46 1 7.4225 4.3129 -0.1966 47 1 8.0928 2.9520 -1.1391 48 1 5.9969 0.4424 1.6473 49 1 5.9108 1.3891 0.1297 50 1 6.9690 2.4036 2.4901 51 1 6.1976 3.4326 1.2460 52 1 3.5543 3.4828 1.4272 53 1 2.9197 2.4797 2.7674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698799915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -141.580699 kcal Electronic energy + Delta-G solvation = -32825.716601 eV Core-core repulsion = 28696.614943 eV Total energy + Delta-G solvation = -4129.101658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83071 -40.06223 -39.39728 -38.59074 -35.61114 -35.19393 -34.11620 -32.31046 -31.99103 -30.37018 -29.69965 -29.50182 -27.50937 -25.87972 -24.93072 -24.25232 -23.44299 -22.18364 -21.55816 -20.91853 -20.12504 -18.94340 -18.51906 -18.06358 -17.48408 -17.22160 -17.03047 -16.42928 -16.31248 -16.14848 -15.90064 -15.74619 -15.48554 -15.32471 -15.19056 -14.70951 -14.37277 -14.10785 -13.82711 -13.73370 -13.47955 -13.31944 -13.18117 -13.09777 -12.93102 -12.58426 -12.40007 -12.35922 -12.32937 -12.28041 -12.10015 -11.98866 -11.92729 -11.77254 -11.71057 -11.57811 -11.39252 -11.16047 -11.01503 -10.86644 -10.72893 -10.42798 -9.96416 -8.94654 -7.91930 -5.15389 1.42990 1.45642 1.50560 1.56436 1.90958 2.55793 2.83570 2.97446 3.38915 3.44990 3.61549 3.73938 3.77212 3.84522 3.85544 3.96485 3.98398 4.11268 4.13064 4.23457 4.30874 4.33582 4.42464 4.47710 4.47897 4.60356 4.65636 4.73125 4.77411 4.79621 4.83735 4.86209 4.90459 4.96978 4.99783 5.02354 5.05143 5.10264 5.16034 5.23691 5.24815 5.25256 5.42295 5.48368 5.55276 5.63189 5.70374 5.77281 6.06165 6.32569 6.60832 7.24966 7.40756 8.14139 8.39217 9.30352 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.004688 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.619255 B = 5970.971300 C = 8040.350688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.383 6.383 4 C 0.085 3.915 5 H 0.099 0.901 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.690 5.690 9 C 0.124 3.876 10 C 0.184 3.816 11 N -0.708 5.708 12 C -0.212 4.212 13 H 0.059 0.941 14 C -0.061 4.061 15 N -0.957 5.957 16 Si 0.945 3.055 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.286 1.286 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.128 4.128 25 H 0.120 0.880 26 C -0.150 4.150 27 C 0.038 3.962 28 O -0.389 6.389 29 C 0.051 3.949 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.378 0.622 39 H 0.248 0.752 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.077 0.923 50 H 0.115 0.885 51 H 0.056 0.944 52 H 0.041 0.959 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 -2.513 16.865 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.302 6.302 4 C 0.024 3.976 5 H 0.117 0.883 6 C 0.296 3.704 7 O -0.456 6.456 8 N -0.344 5.344 9 C -0.002 4.002 10 C 0.093 3.907 11 N -0.348 5.348 12 C -0.345 4.345 13 H 0.077 0.923 14 C -0.254 4.254 15 N -0.608 5.608 16 Si 0.777 3.223 17 H -0.217 1.217 18 H -0.224 1.224 19 H -0.212 1.212 20 C -0.170 4.170 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.147 4.147 25 H 0.138 0.862 26 C -0.188 4.188 27 C -0.038 4.038 28 O -0.309 6.309 29 C -0.026 4.026 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.128 0.872 49 H 0.095 0.905 50 H 0.133 0.867 51 H 0.074 0.926 52 H 0.060 0.940 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.832 -1.606 16.905 17.079 hybrid contribution -0.214 -0.653 -2.020 2.133 sum -2.046 -2.260 14.885 15.194 Atomic orbital electron populations 1.21757 0.92794 1.03532 1.02481 1.22882 0.96562 0.82277 1.01498 1.88027 1.19038 1.28610 1.94476 1.22020 0.83701 0.95125 0.96793 0.88330 1.20717 0.82213 0.89573 0.77924 1.90661 1.49046 1.47650 1.58198 1.45902 1.12061 1.14741 1.61679 1.21780 0.97929 0.83767 0.96719 1.20853 0.90982 0.89982 0.88877 1.42402 1.51571 1.24216 1.16587 1.19178 1.14038 1.07966 0.93291 0.92255 1.25147 1.01620 0.98148 1.00457 1.69734 1.43832 1.14307 1.32955 0.85585 0.78245 0.76216 0.82296 1.21709 1.22408 1.21192 1.22884 0.96723 0.97002 1.00370 1.22198 0.94871 0.99949 0.97735 1.22029 0.97192 0.98572 0.97143 1.22382 0.95037 1.00690 0.97350 1.22960 0.96706 1.00877 0.94146 0.86195 1.23129 0.92922 1.00728 1.02005 1.23630 0.91501 0.96097 0.92577 1.89088 1.15647 1.89787 1.36334 1.23438 0.88771 0.95531 0.94849 0.93421 0.88480 0.91836 0.92879 0.90699 0.75459 0.91616 0.95165 0.78898 0.94293 0.93697 0.90663 0.90908 0.94102 0.90021 0.91989 0.89762 0.91389 0.87200 0.90451 0.86691 0.92562 0.94030 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.04 0.90 6.49 71.98 0.47 1.36 16 3 O -0.38 -11.16 9.50 -130.31 -1.24 -12.40 16 4 C 0.09 2.30 2.26 29.84 0.07 2.37 16 5 H 0.10 2.41 7.76 -2.39 -0.02 2.39 16 6 C 0.51 17.87 5.38 87.65 0.47 18.34 16 7 O -0.58 -25.29 15.87 15.65 0.25 -25.04 16 8 N -0.69 -22.45 4.64 -463.06 -2.15 -24.60 16 9 C 0.12 4.38 4.38 86.38 0.38 4.75 16 10 C 0.18 6.20 0.52 4.68 0.00 6.20 16 11 N -0.71 -30.49 4.80 -298.51 -1.43 -31.92 16 12 C -0.21 -10.89 8.54 84.03 0.72 -10.18 16 13 H 0.06 3.14 7.14 -2.91 -0.02 3.12 16 14 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 15 N -0.96 -54.39 13.07 21.65 0.28 -54.10 16 16 Si 0.94 45.83 29.56 68.60 2.03 47.86 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 18 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 20 C -0.13 -4.27 5.90 32.01 0.19 -4.08 16 21 C -0.11 -3.20 6.80 31.79 0.22 -2.98 16 22 C -0.11 -2.68 6.80 31.32 0.21 -2.47 16 23 C -0.12 -2.99 5.61 31.32 0.18 -2.81 16 24 C -0.13 -2.68 3.12 -9.78 -0.03 -2.71 16 25 H 0.12 1.95 7.58 -2.38 -0.02 1.94 16 26 C -0.15 -2.67 6.15 31.61 0.19 -2.47 16 27 C 0.04 0.76 7.63 72.49 0.55 1.31 16 28 O -0.39 -9.86 11.65 -148.98 -1.74 -11.59 16 29 C 0.05 1.30 6.93 72.48 0.50 1.80 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.06 7.97 -2.39 -0.02 1.04 16 34 H 0.07 1.13 7.60 -2.39 -0.02 1.12 16 35 H 0.41 12.01 5.53 -92.71 -0.51 11.50 16 36 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.03 1.30 7.52 -2.39 -0.02 1.28 16 38 H 0.38 17.34 7.47 -92.71 -0.69 16.65 16 39 H 0.25 13.98 8.31 -92.71 -0.77 13.20 16 40 H 0.04 1.75 7.08 -2.39 -0.02 1.73 16 41 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.08 1.82 6.61 -2.39 -0.02 1.81 16 47 H 0.07 1.72 7.73 -2.38 -0.02 1.70 16 48 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.47 4.90 -2.39 -0.01 1.46 16 50 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.06 1.22 6.91 -2.39 -0.02 1.20 16 52 H 0.04 1.33 5.80 -2.39 -0.01 1.32 16 53 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -68.78 406.19 1.03 -67.74 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.29 Total: 40.43 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.33 Total: 3.62 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -3.30 Total: -110.63 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -2.73 Total: -49.03 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.78 1.03 -67.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698799915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.836 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds