Wall clock time and date at job start Sat Apr 11 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47117 * 2 1 4 4 C 1.42901 * 113.99555 * 184.74199 * 3 2 1 5 5 H 1.08998 * 109.47765 * 329.75269 * 4 3 2 6 6 C 1.50696 * 109.47290 * 89.75800 * 4 3 2 7 7 O 1.21282 * 120.00108 * 4.99313 * 6 4 3 8 8 N 1.34779 * 120.00308 * 184.99652 * 6 4 3 9 9 C 1.46503 * 120.00007 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.46744 * 175.39037 * 9 8 6 11 11 N 1.46495 * 110.43920 * 57.49647 * 10 9 8 12 12 C 1.36934 * 120.00266 * 62.20697 * 11 10 9 13 13 H 1.08004 * 120.00150 * 353.22385 * 12 11 10 14 14 C 1.38814 * 120.00109 * 173.22242 * 12 11 10 15 15 N 1.31618 * 120.00254 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99842 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47095 * 89.99985 * 16 14 12 18 18 H 1.48500 * 109.47176 * 329.99964 * 16 14 12 19 19 H 1.48498 * 109.47005 * 210.00072 * 16 14 12 20 20 C 1.54897 * 110.48451 * 180.02562 * 10 9 8 21 21 C 1.55241 * 102.58731 * 156.67545 * 20 10 9 22 22 C 1.54261 * 104.23243 * 322.08490 * 21 20 10 23 23 C 1.53881 * 106.60012 * 23.60964 * 22 21 20 24 24 C 1.53001 * 109.46909 * 209.75289 * 4 3 2 25 25 H 1.08993 * 110.80601 * 184.86694 * 24 4 3 26 26 C 1.54817 * 110.90648 * 61.23266 * 24 4 3 27 27 C 1.54099 * 104.18996 * 220.92201 * 26 24 4 28 28 O 1.43753 * 107.29343 * 357.97046 * 27 26 24 29 29 C 1.44385 * 106.97278 * 26.51632 * 28 27 26 30 30 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46859 * 300.00100 * 1 2 3 32 32 H 1.09000 * 109.46918 * 59.99762 * 1 2 3 33 33 H 1.09004 * 109.46859 * 239.99900 * 2 1 3 34 34 H 1.09000 * 109.46918 * 120.00238 * 2 1 3 35 35 H 0.96998 * 119.99474 * 359.97438 * 8 6 4 36 36 H 1.08995 * 109.46998 * 55.38963 * 9 8 6 37 37 H 1.08998 * 109.47253 * 295.38931 * 9 8 6 38 38 H 0.97003 * 119.99842 * 242.21710 * 11 10 9 39 39 H 0.96997 * 119.99409 * 359.97438 * 15 14 12 40 40 H 1.09003 * 110.75577 * 275.06700 * 20 10 9 41 41 H 1.09000 * 110.75220 * 38.43940 * 20 10 9 42 42 H 1.08997 * 110.47132 * 203.39407 * 21 20 10 43 43 H 1.08998 * 110.58041 * 80.83246 * 21 20 10 44 44 H 1.09000 * 110.03529 * 264.32720 * 22 21 20 45 45 H 1.09008 * 110.07447 * 142.91740 * 22 21 20 46 46 H 1.08991 * 110.03355 * 240.71460 * 23 22 21 47 47 H 1.09001 * 110.03050 * 119.28031 * 23 22 21 48 48 H 1.08991 * 110.48731 * 339.60136 * 26 24 4 49 49 H 1.09000 * 110.48478 * 102.24863 * 26 24 4 50 50 H 1.08996 * 109.88113 * 117.39696 * 27 26 24 51 51 H 1.09002 * 109.88263 * 238.55282 * 27 26 24 52 52 H 1.09000 * 110.61407 * 201.43776 * 29 28 27 53 53 H 1.08993 * 110.62185 * 78.43843 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4267 1.4615 -0.1079 5 1 3.8971 0.5918 0.3506 6 6 3.8157 1.5348 -1.5620 7 8 2.9576 1.5847 -2.4175 8 7 5.1173 1.5449 -1.9117 9 6 5.4955 1.6156 -3.3253 10 6 7.0168 1.7283 -3.4411 11 7 7.6657 0.5932 -2.7803 12 6 7.4450 -0.6802 -3.2329 13 1 6.7104 -0.8595 -4.0040 14 6 8.1654 -1.7406 -2.7006 15 7 9.0603 -1.5222 -1.7604 16 14 7.8648 -3.4777 -3.3185 17 1 8.7701 -3.7602 -4.4613 18 1 6.4533 -3.6082 -3.7612 19 1 8.1319 -4.4455 -2.2244 20 6 7.4430 1.8054 -4.9283 21 6 8.8271 2.5038 -4.8478 22 6 8.6584 3.5521 -3.7288 23 6 7.5074 3.0591 -2.8344 24 6 3.8922 2.7304 0.6091 25 1 4.9618 2.8847 0.4677 26 6 3.5360 2.6764 2.1147 27 6 3.0539 4.1034 2.4403 28 8 3.1828 4.8824 1.2390 29 6 3.0863 3.9643 0.1289 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8036 1.5053 -1.2274 36 1 5.0306 2.4890 -3.7825 37 1 5.1579 0.7145 -3.8372 38 1 8.2516 0.7437 -2.0220 39 1 9.2166 -0.6202 -1.4399 40 1 7.5356 0.8070 -5.3559 41 1 6.7386 2.4084 -5.5012 42 1 9.0641 2.9905 -5.7939 43 1 9.6038 1.7859 -4.5842 44 1 8.4074 4.5213 -4.1598 45 1 9.5769 3.6292 -3.1468 46 1 6.6980 3.7889 -2.8314 47 1 7.8675 2.8960 -1.8186 48 1 2.7390 1.9546 2.2925 49 1 4.4168 2.4271 2.7064 50 1 2.0110 4.0793 2.7563 51 1 3.6723 4.5328 3.2285 52 1 3.5387 4.3940 -0.7649 53 1 2.0467 3.6950 -0.0574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698799916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:43 Heat of formation + Delta-G solvation = -150.347895 kcal Electronic energy + Delta-G solvation = -32196.068500 eV Core-core repulsion = 28066.586667 eV Total energy + Delta-G solvation = -4129.481833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57792 -40.29925 -39.58787 -38.40834 -35.72403 -35.41135 -34.25226 -32.23281 -31.90265 -30.57815 -29.63277 -29.50175 -27.58319 -25.81261 -24.92242 -23.95014 -23.60192 -22.12485 -21.54816 -20.96748 -20.48358 -19.14809 -18.60625 -18.09228 -17.44769 -17.19025 -17.12694 -16.52740 -16.37799 -16.08674 -15.95459 -15.75634 -15.64018 -15.41246 -15.19471 -14.63495 -14.58365 -14.30283 -14.06814 -13.76213 -13.59347 -13.22707 -12.99368 -12.93020 -12.71613 -12.71046 -12.42406 -12.38072 -12.30491 -12.27353 -12.04698 -11.93343 -11.91807 -11.84389 -11.64683 -11.64545 -11.40667 -11.30730 -11.07335 -10.89313 -10.66766 -10.32022 -10.01941 -9.04021 -8.28173 -5.23143 1.52115 1.57137 1.64146 1.78224 2.04033 2.59946 2.70276 2.92237 3.34607 3.42926 3.62959 3.63628 3.74489 3.79151 3.80636 3.88423 4.02094 4.05919 4.14420 4.17019 4.31020 4.32317 4.36597 4.40108 4.42424 4.52082 4.58307 4.66621 4.70579 4.77355 4.78324 4.85247 4.88430 4.90228 4.96824 4.98836 5.02340 5.04243 5.12936 5.14833 5.15812 5.21116 5.32893 5.39285 5.47541 5.60142 5.73744 5.85330 5.95843 6.55873 6.61338 7.17387 7.20010 8.07144 8.18726 9.23279 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.003948 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.817784 B = 7089.951170 C = 8544.096862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.363 6.363 4 C 0.091 3.909 5 H 0.103 0.897 6 C 0.483 3.517 7 O -0.576 6.576 8 N -0.695 5.695 9 C 0.129 3.871 10 C 0.189 3.811 11 N -0.721 5.721 12 C -0.302 4.302 13 H 0.053 0.947 14 C -0.093 4.093 15 N -0.975 5.975 16 Si 1.112 2.888 17 H -0.291 1.291 18 H -0.285 1.285 19 H -0.295 1.295 20 C -0.129 4.129 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.110 4.110 25 H 0.110 0.890 26 C -0.141 4.141 27 C 0.044 3.956 28 O -0.398 6.398 29 C 0.060 3.940 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.363 0.637 39 H 0.248 0.752 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.064 0.936 51 H 0.100 0.900 52 H 0.082 0.918 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 10.293 7.045 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 O -0.281 6.281 4 C 0.029 3.971 5 H 0.121 0.879 6 C 0.270 3.730 7 O -0.456 6.456 8 N -0.346 5.346 9 C 0.002 3.998 10 C 0.098 3.902 11 N -0.363 5.363 12 C -0.434 4.434 13 H 0.071 0.929 14 C -0.286 4.286 15 N -0.624 5.624 16 Si 0.941 3.059 17 H -0.218 1.218 18 H -0.211 1.211 19 H -0.221 1.221 20 C -0.169 4.169 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.129 4.129 25 H 0.128 0.872 26 C -0.178 4.178 27 C -0.032 4.032 28 O -0.317 6.317 29 C -0.017 4.017 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.196 0.804 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.082 0.918 51 H 0.119 0.881 52 H 0.101 0.899 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.821 9.078 6.429 15.519 hybrid contribution 0.312 0.606 -0.156 0.699 sum -10.509 9.684 6.273 15.607 Atomic orbital electron populations 1.21699 0.92053 1.03381 1.02803 1.22755 0.97125 0.82791 1.00170 1.87930 1.18783 1.27859 1.93512 1.21824 0.84113 1.00776 0.90364 0.87933 1.21772 0.82560 0.76021 0.92689 1.90655 1.50530 1.51299 1.53096 1.45783 1.06840 1.72803 1.09164 1.21660 0.96988 0.99464 0.81676 1.20767 0.88836 0.87760 0.92843 1.42436 1.55973 1.01651 1.36225 1.20001 1.18101 0.86456 1.18877 0.92946 1.26574 0.96691 1.06051 0.99252 1.70950 1.37083 1.22387 1.31930 0.82763 0.75406 0.72683 0.75058 1.21811 1.21101 1.22136 1.22872 0.97457 0.99736 0.96806 1.22193 0.96311 0.97224 0.98963 1.22046 0.97967 0.98674 0.96366 1.22337 0.98753 0.95094 0.99226 1.22835 1.01354 0.92285 0.96421 0.87219 1.22952 1.03422 0.98094 0.93356 1.23317 1.01545 0.90496 0.87848 1.88838 1.94508 1.32674 1.15712 1.23411 0.99885 0.88351 0.90005 0.89256 0.90844 0.93220 0.95309 0.91080 0.75853 0.91617 0.95343 0.80372 0.94125 0.93706 0.90688 0.90715 0.94324 0.89993 0.92061 0.90064 0.91760 0.89463 0.88261 0.91768 0.88142 0.89941 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.05 1.12 6.44 71.98 0.46 1.59 16 3 O -0.36 -9.68 7.70 -129.99 -1.00 -10.68 16 4 C 0.09 2.34 2.25 29.85 0.07 2.41 16 5 H 0.10 2.39 7.83 -2.39 -0.02 2.37 16 6 C 0.48 16.06 6.74 87.66 0.59 16.65 16 7 O -0.58 -23.60 16.51 15.95 0.26 -23.33 16 8 N -0.69 -22.58 5.18 -463.08 -2.40 -24.98 16 9 C 0.13 4.59 4.34 86.38 0.38 4.96 16 10 C 0.19 6.54 0.52 4.68 0.00 6.54 16 11 N -0.72 -31.13 4.67 -298.50 -1.40 -32.52 16 12 C -0.30 -15.45 8.54 84.03 0.72 -14.74 16 13 H 0.05 2.78 7.13 -2.91 -0.02 2.76 16 14 C -0.09 -5.06 5.50 84.86 0.47 -4.60 16 15 N -0.98 -56.71 13.70 21.65 0.30 -56.41 16 16 Si 1.11 51.13 29.92 68.60 2.05 53.18 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 C -0.13 -4.37 5.90 32.01 0.19 -4.18 16 21 C -0.11 -3.31 6.80 31.79 0.22 -3.09 16 22 C -0.11 -2.89 6.80 31.32 0.21 -2.68 16 23 C -0.12 -3.20 5.72 31.32 0.18 -3.02 16 24 C -0.11 -2.36 2.96 -9.49 -0.03 -2.38 16 25 H 0.11 2.18 7.89 -2.39 -0.02 2.16 16 26 C -0.14 -2.34 6.50 31.59 0.21 -2.13 16 27 C 0.04 0.78 7.70 72.35 0.56 1.34 16 28 O -0.40 -9.83 11.52 -148.98 -1.72 -11.54 16 29 C 0.06 1.49 6.74 72.67 0.49 1.98 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 0.81 8.12 -2.38 -0.02 0.79 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.41 12.36 7.84 -92.71 -0.73 11.63 16 36 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 37 H 0.03 1.21 7.44 -2.39 -0.02 1.19 16 38 H 0.36 16.38 6.33 -92.71 -0.59 15.80 16 39 H 0.25 14.13 6.79 -92.71 -0.63 13.51 16 40 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 41 H 0.07 2.21 8.06 -2.39 -0.02 2.19 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 46 H 0.08 1.98 7.80 -2.39 -0.02 1.97 16 47 H 0.06 1.76 7.74 -2.39 -0.02 1.75 16 48 H 0.09 1.41 7.38 -2.39 -0.02 1.40 16 49 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.06 1.73 7.09 -2.39 -0.02 1.72 16 Total: -1.00 -67.54 414.68 1.27 -66.27 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.28 Total: 43.35 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.44 Total: -3.34 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.50 Total: -113.91 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.45 Total: -45.56 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -67.54 1.27 -66.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698799916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.077 kcal (2) G-P(sol) polarization free energy of solvation -67.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds