Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00243 * 2 1 4 4 H 1.08995 * 109.47231 * 29.99182 * 3 2 1 5 5 C 1.50700 * 109.46686 * 269.99464 * 3 2 1 6 6 O 1.21281 * 120.00148 * 354.99989 * 5 3 2 7 7 N 1.34783 * 119.99765 * 175.00054 * 5 3 2 8 8 C 1.46506 * 119.99871 * 175.00134 * 7 5 3 9 9 C 1.53001 * 109.49595 * 302.77733 * 8 7 5 10 10 O 1.42905 * 109.47214 * 300.59293 * 9 8 7 11 11 C 1.53044 * 109.49878 * 62.84008 * 8 7 5 12 12 C 1.53104 * 109.50267 * 58.61886 * 11 8 7 13 13 C 1.53197 * 109.32907 * 61.34091 * 12 11 8 14 14 N 1.46923 * 108.77770 * 305.36481 * 13 12 11 15 15 C 1.36933 * 120.63277 * 233.58758 * 14 13 12 16 16 H 1.08000 * 119.99625 * 31.78756 * 15 14 13 17 17 C 1.38811 * 120.00083 * 211.79222 * 15 14 13 18 18 N 1.31614 * 119.99906 * 11.10677 * 17 15 14 19 19 Si 1.86810 * 119.99884 * 191.10863 * 17 15 14 20 20 H 1.48496 * 109.46815 * 90.00124 * 19 17 15 21 21 H 1.48494 * 109.47030 * 209.99973 * 19 17 15 22 22 H 1.48499 * 109.47123 * 329.99988 * 19 17 15 23 23 C 1.46922 * 118.73764 * 53.60652 * 14 13 12 24 24 C 1.52995 * 109.47406 * 149.99688 * 3 2 1 25 25 C 1.54266 * 110.03462 * 57.90243 * 24 3 2 26 26 C 1.54958 * 104.16444 * 217.13613 * 25 24 3 27 27 C 1.54895 * 102.77472 * 37.89117 * 26 25 24 28 28 C 1.53877 * 110.03408 * 300.68811 * 24 3 2 29 29 H 1.09003 * 109.47556 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47226 * 300.00747 * 1 2 3 31 31 H 1.09007 * 109.46871 * 60.00741 * 1 2 3 32 32 H 0.96994 * 120.00214 * 354.99611 * 7 5 3 33 33 H 1.08994 * 109.47329 * 60.58973 * 9 8 7 34 34 H 1.08997 * 109.47009 * 180.59517 * 9 8 7 35 35 H 0.96696 * 114.00404 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.45703 * 178.61015 * 11 8 7 37 37 H 1.08997 * 109.45688 * 298.56618 * 11 8 7 38 38 H 1.09003 * 109.48955 * 301.38803 * 12 11 8 39 39 H 1.08997 * 109.51361 * 181.31629 * 12 11 8 40 40 H 1.09001 * 109.58451 * 185.57337 * 13 12 11 41 41 H 1.08999 * 109.58736 * 65.15399 * 13 12 11 42 42 H 0.97010 * 119.99784 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.58657 * 186.60325 * 23 14 13 44 44 H 1.09004 * 109.70622 * 66.25330 * 23 14 13 45 45 H 1.08999 * 110.02009 * 179.29503 * 24 3 2 46 46 H 1.09004 * 110.48850 * 335.78870 * 25 24 3 47 47 H 1.09002 * 110.48539 * 98.42850 * 25 24 3 48 48 H 1.08999 * 110.72531 * 279.57908 * 26 25 24 49 49 H 1.08997 * 110.76927 * 156.22226 * 26 25 24 50 50 H 1.09007 * 110.48537 * 203.40484 * 27 26 25 51 51 H 1.08998 * 110.48849 * 80.76302 * 27 26 25 52 52 H 1.08998 * 110.03230 * 238.57549 * 28 24 3 53 53 H 1.08999 * 110.02609 * 359.94943 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2147 1.7642 -1.4209 6 8 1.9793 1.0103 -2.3413 7 7 2.6591 3.0123 -1.6687 8 6 2.9623 3.4226 -3.0420 9 6 4.0073 2.4776 -3.6384 10 8 5.1946 2.5180 -2.8443 11 6 1.6857 3.3698 -3.8846 12 6 0.6286 4.2905 -3.2691 13 6 1.1493 5.7313 -3.2687 14 7 2.4494 5.7641 -2.5852 15 6 2.6693 6.6273 -1.5452 16 1 1.8557 6.9017 -0.8900 17 6 3.9377 7.1497 -1.3330 18 7 4.8737 6.9960 -2.2454 19 14 4.3162 8.0708 0.2475 20 1 4.8093 7.1150 1.2714 21 1 5.3575 9.0964 -0.0145 22 1 3.0824 8.7330 0.7421 23 6 3.5093 4.8535 -3.0390 24 6 3.3588 1.2633 0.7213 25 6 4.2933 0.2452 0.0356 26 6 5.0700 -0.4059 1.2077 27 6 3.9914 -0.5165 2.3138 28 6 3.1672 0.7795 2.1694 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.7781 3.6388 -0.9378 33 1 3.6131 1.4615 -3.6510 34 1 4.2403 2.7896 -4.6565 35 1 5.9020 1.9419 -3.1647 36 1 1.9070 3.6988 -4.8999 37 1 1.3085 2.3475 -3.9085 38 1 0.4250 3.9770 -2.2452 39 1 -0.2884 4.2352 -3.8557 40 1 0.4436 6.3747 -2.7431 41 1 1.2674 6.0774 -4.2955 42 1 5.7603 7.3607 -2.0970 43 1 4.3610 4.9177 -2.3618 44 1 3.8224 5.1271 -4.0467 45 1 3.8162 2.2527 0.7156 46 1 3.7123 -0.5052 -0.5005 47 1 4.9794 0.7534 -0.6421 48 1 5.8900 0.2355 1.5306 49 1 5.4378 -1.3928 0.9268 50 1 4.4577 -0.5644 3.2980 51 1 3.3613 -1.3900 2.1463 52 1 3.5322 1.5338 2.8664 53 1 2.1133 0.5757 2.3585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700008361.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -139.956825 kcal Electronic energy + Delta-G solvation = -33672.377349 eV Core-core repulsion = 29543.346107 eV Total energy + Delta-G solvation = -4129.031242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68890 -40.03340 -38.42441 -37.59995 -37.29746 -35.33625 -34.24685 -32.48000 -31.71390 -30.77704 -29.53736 -27.54309 -27.31811 -26.64482 -26.24831 -23.98063 -22.57164 -21.87014 -21.36010 -20.69810 -19.99227 -18.90367 -18.40712 -18.15040 -17.56291 -17.02261 -16.86543 -16.36956 -16.20711 -15.86292 -15.70423 -15.58527 -15.12346 -15.01666 -14.77324 -14.62423 -14.17201 -14.12649 -14.11634 -13.95006 -13.61553 -13.44221 -13.07530 -12.86436 -12.74244 -12.55255 -12.49992 -12.28080 -12.18324 -11.95810 -11.93251 -11.85497 -11.69494 -11.64348 -11.54775 -11.46380 -11.37260 -11.32624 -11.12030 -10.85650 -10.52811 -10.00752 -9.76665 -8.60206 -7.82981 -5.34982 1.49809 1.51322 1.59204 1.72878 2.23817 2.52819 2.84793 3.32494 3.34015 3.58847 3.67031 3.71492 3.80651 3.89260 4.07486 4.12446 4.24391 4.24772 4.35213 4.36011 4.47483 4.49542 4.55642 4.60888 4.64673 4.70028 4.74498 4.80383 4.82363 4.84274 4.89030 4.90812 4.93892 4.97920 5.05715 5.11057 5.12932 5.19930 5.27210 5.32795 5.37643 5.47659 5.47978 5.56062 5.65789 5.78327 5.78507 6.08265 6.44548 6.79718 6.92260 7.17963 7.40065 7.86043 8.41450 9.22195 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.004875 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.715059 B = 5742.720241 C = 6681.582405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.085 3.915 4 H 0.093 0.907 5 C 0.496 3.504 6 O -0.567 6.567 7 N -0.684 5.684 8 C 0.162 3.838 9 C 0.076 3.924 10 O -0.573 6.573 11 C -0.115 4.115 12 C -0.114 4.114 13 C 0.140 3.860 14 N -0.603 5.603 15 C -0.261 4.261 16 H 0.068 0.932 17 C -0.039 4.039 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.269 1.269 23 C 0.195 3.805 24 C -0.083 4.083 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.111 4.111 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.401 0.599 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.386 0.614 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.013 0.987 42 H 0.249 0.751 43 H 0.072 0.928 44 H 0.001 0.999 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 -14.328 6.155 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.023 3.977 4 H 0.111 0.889 5 C 0.283 3.717 6 O -0.447 6.447 7 N -0.334 5.334 8 C 0.074 3.926 9 C -0.003 4.003 10 O -0.379 6.379 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.015 3.985 14 N -0.326 5.326 15 C -0.391 4.391 16 H 0.085 0.915 17 C -0.236 4.236 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.194 1.194 23 C 0.068 3.932 24 C -0.102 4.102 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.236 0.764 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.007 -14.516 5.851 16.432 hybrid contribution 0.696 1.044 0.035 1.255 sum -4.310 -13.472 5.886 15.321 Atomic orbital electron populations 1.22977 0.79957 1.03968 1.00141 1.87939 1.20831 1.25071 1.94355 1.22059 0.97575 0.86645 0.91384 0.88903 1.21542 0.76280 0.81357 0.92540 1.90554 1.52471 1.54898 1.46748 1.45838 1.65387 1.12944 1.09257 1.20990 0.93690 0.95703 0.82219 1.22433 0.85503 0.99077 0.93290 1.86537 1.25752 1.69959 1.55657 1.21714 0.94989 1.00435 0.98240 1.21788 0.97545 0.95654 1.00334 1.21086 0.87617 0.94972 0.94848 1.44207 1.10059 1.41150 1.37214 1.19406 0.95244 1.20166 1.04298 0.91463 1.25842 0.97859 0.99483 1.00399 1.70128 1.03570 1.49407 1.34344 0.85361 0.77460 0.78090 0.80067 1.20842 1.22745 1.19403 1.20593 0.91496 0.84075 0.97005 1.21875 0.91901 1.00403 0.95993 1.22254 0.97286 0.97582 0.97812 1.22477 0.97738 1.00497 0.95009 1.22280 0.96774 0.97386 0.98750 1.22106 1.01134 0.97868 0.93703 0.87924 0.92221 0.95269 0.76404 0.92563 0.93302 0.76634 0.91854 0.91153 0.93076 0.90574 0.92531 0.96924 0.94214 0.91021 0.98134 0.90228 0.92405 0.93020 0.91424 0.91182 0.90483 0.91672 0.90882 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.81 113.37 1.23 1.78 16 2 O -0.36 -9.95 8.34 -129.99 -1.08 -11.04 16 3 C 0.08 2.34 2.06 29.85 0.06 2.41 16 4 H 0.09 2.28 7.79 -2.39 -0.02 2.26 16 5 C 0.50 16.71 5.92 87.66 0.52 17.23 16 6 O -0.57 -21.68 12.77 15.96 0.20 -21.48 16 7 N -0.68 -24.60 4.00 -422.55 -1.69 -26.29 16 8 C 0.16 6.20 0.45 3.68 0.00 6.20 16 9 C 0.08 2.70 5.69 71.98 0.41 3.11 16 10 O -0.57 -20.05 12.98 -148.98 -1.93 -21.99 16 11 C -0.12 -4.09 4.52 30.64 0.14 -3.96 16 12 C -0.11 -3.92 5.93 30.69 0.18 -3.74 16 13 C 0.14 5.66 6.52 86.36 0.56 6.23 16 14 N -0.60 -28.67 2.85 -699.11 -1.99 -30.66 16 15 C -0.26 -13.44 9.57 84.03 0.80 -12.64 16 16 H 0.07 3.37 7.85 -2.91 -0.02 3.35 16 17 C -0.04 -2.10 5.03 84.86 0.43 -1.67 16 18 N -0.93 -53.19 11.11 21.65 0.24 -52.95 16 19 Si 0.96 43.00 29.57 68.60 2.03 45.03 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.19 9.11 3.75 86.36 0.32 9.43 16 24 C -0.08 -2.14 2.79 -10.07 -0.03 -2.17 16 25 C -0.11 -3.01 5.65 31.69 0.18 -2.83 16 26 C -0.12 -2.56 6.91 31.91 0.22 -2.34 16 27 C -0.11 -2.17 6.83 31.67 0.22 -1.96 16 28 C -0.11 -2.28 6.22 31.32 0.19 -2.09 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.40 15.28 8.41 -92.71 -0.78 14.50 16 33 H 0.06 2.04 6.16 -2.39 -0.01 2.03 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.39 9.73 9.12 -74.06 -0.68 9.05 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.55 6.25 -2.39 -0.01 2.53 16 38 H 0.05 1.80 7.53 -2.39 -0.02 1.78 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 43 H 0.07 3.85 5.89 -2.39 -0.01 3.84 16 44 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16 45 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 46 H 0.06 1.77 7.15 -2.39 -0.02 1.76 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.07 1.40 7.40 -2.39 -0.02 1.38 16 Total: -1.00 -64.37 403.43 0.66 -63.71 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.55 Total: 42.66 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.44 Total: 13.00 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -3.44 Total: -109.90 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -2.81 Total: -54.50 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.37 0.66 -63.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700008361.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.245 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds