Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00268 * 2 1 4 4 C 1.53008 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46898 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.46711 * 180.02562 * 5 4 3 7 7 C 1.42897 * 113.99448 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46706 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46956 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99698 * 179.72537 * 9 8 7 12 12 C 1.45730 * 117.76183 * 359.97438 * 11 9 8 13 13 C 1.53052 * 109.55682 * 141.08568 * 12 11 9 14 14 C 1.52946 * 108.49529 * 53.80054 * 13 12 11 15 15 C 1.52930 * 109.78834 * 294.00961 * 14 13 12 16 16 H 1.08996 * 110.51178 * 292.89733 * 15 14 13 17 17 C 1.44185 * 117.75810 * 179.73899 * 11 9 8 18 18 H 1.09005 * 109.23107 * 333.40520 * 17 11 9 19 19 C 1.54565 * 111.48556 * 93.65892 * 17 11 9 20 20 C 1.54052 * 103.67562 * 153.28022 * 19 17 11 21 21 N 1.46891 * 107.70903 * 342.85452 * 20 19 17 22 22 C 1.36932 * 125.58527 * 177.00404 * 21 20 19 23 23 H 1.07993 * 119.99975 * 187.39066 * 22 21 20 24 24 C 1.38813 * 120.00058 * 7.38672 * 22 21 20 25 25 N 1.31628 * 119.99812 * 8.04176 * 24 22 21 26 26 Si 1.86793 * 120.00103 * 188.04291 * 24 22 21 27 27 H 1.48500 * 109.47261 * 94.77367 * 26 24 22 28 28 H 1.48508 * 109.46895 * 214.77099 * 26 24 22 29 29 H 1.48500 * 109.47223 * 334.76810 * 26 24 22 30 30 H 1.09001 * 109.46695 * 59.99546 * 1 2 3 31 31 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46493 * 299.99950 * 1 2 3 33 33 H 1.09003 * 109.47149 * 60.00845 * 3 2 1 34 34 H 1.09000 * 109.47465 * 300.00166 * 3 2 1 35 35 H 1.08992 * 109.47173 * 60.00335 * 4 3 2 36 36 H 1.09009 * 109.46822 * 300.00068 * 4 3 2 37 37 H 1.08992 * 109.47434 * 59.99883 * 5 4 3 38 38 H 1.08998 * 109.46529 * 299.99603 * 5 4 3 39 39 H 1.08998 * 109.47493 * 60.00023 * 7 6 5 40 40 H 1.08996 * 109.47312 * 299.99613 * 7 6 5 41 41 H 1.09001 * 109.47643 * 60.00192 * 8 7 6 42 42 H 1.09003 * 109.47247 * 299.99289 * 8 7 6 43 43 H 1.09001 * 109.45693 * 261.11250 * 12 11 9 44 44 H 1.09000 * 109.45639 * 21.05712 * 12 11 9 45 45 H 1.08998 * 109.63346 * 173.50299 * 13 12 11 46 46 H 1.09001 * 109.63378 * 293.89845 * 13 12 11 47 47 H 1.08999 * 109.41532 * 54.10869 * 14 13 12 48 48 H 1.08999 * 109.41725 * 173.91037 * 14 13 12 49 49 H 1.09008 * 110.61880 * 34.73153 * 19 17 11 50 50 H 1.09002 * 110.71713 * 271.88174 * 19 17 11 51 51 H 1.08991 * 109.81689 * 223.29669 * 20 19 17 52 52 H 1.09004 * 109.86492 * 102.42871 * 20 19 17 53 53 H 0.96993 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 8 5.5825 2.4693 -0.0012 7 6 6.2650 3.7247 -0.0013 8 6 7.7759 3.4838 -0.0020 9 6 8.4957 4.8078 -0.0015 10 8 7.8626 5.8422 -0.0001 11 7 9.8431 4.8423 0.0037 12 6 10.5546 3.5705 0.0092 13 6 11.7876 3.6694 -0.8922 14 6 12.6178 4.8748 -0.4482 15 6 11.8385 6.1645 -0.7087 16 1 11.7208 6.3299 -1.7796 17 6 10.4818 6.1350 -0.0019 18 1 9.8175 6.8616 -0.4698 19 6 10.8091 6.6108 1.4318 20 6 12.0136 7.5514 1.2373 21 7 12.5828 7.2799 -0.0894 22 6 13.6316 7.9511 -0.6590 23 1 13.9019 7.7582 -1.6866 24 6 14.3473 8.8796 0.0843 25 7 14.1239 9.0018 1.3758 26 14 15.6273 9.9557 -0.7480 27 1 15.0127 11.2534 -1.1265 28 1 16.7554 10.1964 0.1873 29 1 16.1317 9.2726 -1.9663 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.6888 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 -0.8908 36 1 3.8575 0.6433 0.8892 37 1 3.8367 3.1226 0.8904 38 1 3.8360 3.1236 -0.8896 39 1 5.9878 4.2891 0.8891 40 1 5.9864 4.2897 -0.8908 41 1 8.0535 2.9193 -0.8922 42 1 8.0542 2.9191 0.8879 43 1 10.8666 3.3334 1.0263 44 1 9.8963 2.7846 -0.3610 45 1 12.3826 2.7609 -0.7999 46 1 11.4745 3.7984 -1.9283 47 1 12.8361 4.7920 0.6165 48 1 13.5528 4.8968 -1.0081 49 1 11.0814 5.7656 2.0641 50 1 9.9657 7.1522 1.8604 51 1 12.7611 7.3583 2.0066 52 1 11.6858 8.5894 1.2931 53 1 14.6242 9.6503 1.8952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700017942.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -127.527901 kcal Electronic energy + Delta-G solvation = -30001.217111 eV Core-core repulsion = 25872.724828 eV Total energy + Delta-G solvation = -4128.492283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81018 -39.71304 -39.17237 -38.53388 -36.88312 -34.45528 -34.01932 -33.89192 -32.25809 -30.74839 -29.87762 -27.95657 -26.64374 -26.00786 -25.60645 -24.42591 -23.22716 -22.60590 -22.08770 -21.09011 -19.44428 -18.79852 -18.61938 -17.68674 -17.64151 -17.03780 -16.96493 -16.78144 -16.67503 -16.21096 -16.08741 -15.71411 -15.41520 -15.07978 -14.93132 -14.87552 -14.81260 -14.29871 -14.10086 -13.84344 -13.57388 -13.43617 -13.18191 -12.85549 -12.79570 -12.69059 -12.60554 -12.59787 -12.37366 -12.34047 -12.18608 -12.02924 -11.93645 -11.89826 -11.81702 -11.62582 -11.53836 -11.17413 -10.80957 -10.73031 -10.63767 -10.59498 -9.61774 -8.90337 -7.84810 -5.23183 1.44908 1.47270 1.55733 1.57392 1.81839 2.41886 2.50724 3.11341 3.31585 3.53866 3.61880 3.84262 3.87724 3.93787 4.01687 4.04643 4.08346 4.12791 4.15727 4.18004 4.32064 4.34135 4.41271 4.46748 4.50374 4.55658 4.56371 4.58987 4.61068 4.65174 4.68251 4.77685 4.83554 4.85555 4.87055 4.90238 4.97600 5.07963 5.10954 5.14996 5.21450 5.36827 5.40500 5.53334 5.61298 5.68422 5.73911 6.14251 6.18614 6.23465 6.39205 7.07126 7.14687 7.74659 8.39483 9.24113 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.001688 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.012972 B =16584.029390 C =16957.596478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.113 4.113 5 C 0.064 3.936 6 O -0.397 6.397 7 C 0.081 3.919 8 C -0.126 4.126 9 C 0.507 3.493 10 O -0.587 6.587 11 N -0.586 5.586 12 C 0.100 3.900 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.156 3.844 16 H 0.049 0.951 17 C 0.154 3.846 18 H 0.065 0.935 19 C -0.133 4.133 20 C 0.186 3.814 21 N -0.614 5.614 22 C -0.237 4.237 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.976 3.024 27 H -0.291 1.291 28 H -0.294 1.294 29 H -0.265 1.265 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.076 0.924 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.027 0.973 52 H -0.007 1.007 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.893 -20.714 -3.110 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.150 4.150 5 C -0.013 4.013 6 O -0.317 6.317 7 C 0.004 3.996 8 C -0.166 4.166 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.316 5.316 12 C -0.020 4.020 13 C -0.160 4.160 14 C -0.161 4.161 15 C 0.049 3.951 16 H 0.067 0.933 17 C 0.048 3.952 18 H 0.083 0.917 19 C -0.172 4.172 20 C 0.060 3.940 21 N -0.339 5.339 22 C -0.366 4.366 23 H 0.100 0.900 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.805 3.195 27 H -0.219 1.219 28 H -0.221 1.221 29 H -0.189 1.189 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.045 0.955 52 H 0.011 0.989 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.816 -20.369 -3.057 30.004 hybrid contribution 0.714 1.936 0.016 2.064 sum -21.103 -18.433 -3.041 28.184 Atomic orbital electron populations 1.22935 0.79297 1.03874 1.00968 1.87821 1.21619 1.28743 1.95655 1.22421 0.92845 0.84596 1.01500 1.21302 0.93291 0.96361 1.04092 1.22402 0.80187 0.97236 1.01434 1.87747 1.18914 1.29390 1.95659 1.22041 0.91377 0.85025 1.01123 1.21501 0.93433 0.93860 1.07781 1.21193 0.82204 0.91885 0.75059 1.90691 1.66978 1.37334 1.51724 1.47110 1.05903 1.06551 1.72080 1.21924 0.94987 0.83785 1.01351 1.21812 0.96085 0.98415 0.99716 1.21911 0.98722 0.94868 1.00613 1.21073 0.89806 0.88881 0.95365 0.93272 1.20616 0.93928 0.84826 0.95857 0.91701 1.22850 0.97823 0.99475 0.97083 1.20766 0.91518 0.93971 0.87698 1.44759 1.35689 1.37247 1.16197 1.19382 1.05552 1.16195 0.95482 0.89968 1.25638 1.01888 1.01986 0.96202 1.70182 1.45107 1.38308 1.06178 0.85088 0.78117 0.78701 0.77606 1.21854 1.22080 1.18929 0.93068 0.88610 0.93088 0.92038 0.91994 0.90777 0.90850 0.92271 0.92194 0.93263 0.93099 0.85325 0.85679 0.90618 0.85746 0.87819 0.90979 0.93528 0.93314 0.90761 0.92018 0.95471 0.98879 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.45 10.70 -148.98 -1.59 -8.05 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 C -0.11 -1.52 5.95 30.60 0.18 -1.34 16 5 C 0.06 0.91 5.94 71.98 0.43 1.33 16 6 O -0.40 -7.26 10.34 -148.98 -1.54 -8.80 16 7 C 0.08 1.58 5.23 71.98 0.38 1.95 16 8 C -0.13 -2.17 4.39 29.85 0.13 -2.04 16 9 C 0.51 13.71 7.59 87.66 0.66 14.38 16 10 O -0.59 -21.19 15.26 -3.03 -0.05 -21.23 16 11 N -0.59 -16.10 2.79 -801.91 -2.24 -18.34 16 12 C 0.10 1.89 6.06 86.54 0.52 2.41 16 13 C -0.12 -2.60 6.10 30.59 0.19 -2.41 16 14 C -0.12 -4.06 5.31 30.55 0.16 -3.90 16 15 C 0.16 6.31 3.28 44.74 0.15 6.45 16 16 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.15 5.72 2.75 45.96 0.13 5.85 16 18 H 0.06 2.77 7.08 -2.38 -0.02 2.75 16 19 C -0.13 -5.36 6.46 31.48 0.20 -5.16 16 20 C 0.19 9.59 5.43 86.66 0.47 10.06 16 21 N -0.61 -31.76 2.94 -672.27 -1.97 -33.73 16 22 C -0.24 -13.32 10.25 84.03 0.86 -12.46 16 23 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 24 C -0.06 -3.67 5.44 84.86 0.46 -3.21 16 25 N -0.95 -57.92 10.50 21.65 0.23 -57.70 16 26 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 29 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.13 1.59 7.33 -2.39 -0.02 1.58 16 42 H 0.13 1.65 8.02 -2.39 -0.02 1.63 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.12 1.35 5.82 -2.39 -0.01 1.34 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 48 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 50 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 52 H -0.01 -0.41 7.88 -2.38 -0.02 -0.43 16 53 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -74.97 414.35 2.32 -72.65 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.86 Total: 12.40 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.60 Total: 14.55 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.98 Total: -109.77 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -3.18 Total: -38.08 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.97 2.32 -72.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700017942.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.877 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds