Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99870 * 2 1 4 4 H 1.08001 * 119.99846 * 202.63604 * 3 2 1 5 5 C 1.38807 * 120.00031 * 22.63804 * 3 2 1 6 6 N 1.31622 * 120.00301 * 13.53408 * 5 3 2 7 7 Si 1.86801 * 120.00043 * 193.53455 * 5 3 2 8 8 H 1.48498 * 109.47153 * 59.99948 * 7 5 3 9 9 H 1.48501 * 109.47129 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47186 * 299.99718 * 7 5 3 11 11 C 1.46497 * 120.00209 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47227 * 89.99344 * 11 2 1 13 13 O 1.42906 * 109.46785 * 65.00193 * 12 11 2 14 14 C 1.42896 * 113.99744 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47259 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.46868 * 64.99602 * 15 14 13 17 17 C 1.46506 * 119.99522 * 90.00509 * 16 15 14 18 18 C 1.34776 * 120.00482 * 270.00422 * 16 15 14 19 19 O 1.21284 * 119.99776 * 359.97438 * 18 16 15 20 20 C 1.50700 * 120.00205 * 180.02562 * 18 16 15 21 21 H 1.09005 * 115.55368 * 323.04067 * 20 18 16 22 22 C 1.53065 * 117.50797 * 177.33536 * 20 18 16 23 23 C 1.52697 * 59.93111 * 252.53133 * 22 20 18 24 24 C 1.53247 * 117.88021 * 107.77236 * 23 22 20 25 25 C 1.53322 * 108.48963 * 196.24743 * 24 23 22 26 26 O 1.42877 * 109.32420 * 306.03783 * 25 24 23 27 27 C 1.42867 * 114.52510 * 64.36167 * 26 25 24 28 28 C 1.53251 * 117.88078 * 252.22267 * 23 22 20 29 29 H 1.09009 * 109.46876 * 275.10514 * 1 2 3 30 30 H 1.08994 * 109.47507 * 35.09889 * 1 2 3 31 31 H 1.08996 * 109.47651 * 155.10821 * 1 2 3 32 32 H 0.96992 * 120.00205 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.46768 * 330.00003 * 11 2 1 34 34 H 1.08990 * 109.47426 * 209.99620 * 11 2 1 35 35 H 1.09007 * 109.47336 * 305.00367 * 12 11 2 36 36 H 1.08996 * 109.47434 * 185.00306 * 12 11 2 37 37 H 1.09000 * 109.47538 * 60.00254 * 14 13 12 38 38 H 1.08992 * 109.47630 * 300.00027 * 14 13 12 39 39 H 1.08998 * 109.47163 * 305.00168 * 15 14 13 40 40 H 1.08998 * 109.47409 * 185.00122 * 15 14 13 41 41 H 1.08999 * 109.47096 * 90.00025 * 17 16 15 42 42 H 1.08998 * 109.47125 * 329.99530 * 17 16 15 43 43 H 1.08999 * 109.46935 * 209.99864 * 17 16 15 44 44 H 1.08996 * 117.50229 * 0.02562 * 22 20 18 45 45 H 1.09003 * 117.50234 * 145.02583 * 22 20 18 46 46 H 1.08992 * 109.63414 * 315.94788 * 24 23 22 47 47 H 1.09001 * 109.63295 * 76.55057 * 24 23 22 48 48 H 1.09006 * 109.49589 * 186.08768 * 25 24 23 49 49 H 1.08997 * 109.52540 * 66.01069 * 25 24 23 50 50 H 1.08998 * 109.49576 * 175.68449 * 27 26 25 51 51 H 1.08997 * 109.52020 * 55.60788 * 27 26 25 52 52 H 1.08999 * 109.63694 * 283.45478 * 28 23 22 53 53 H 1.09007 * 109.63146 * 43.85115 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1673 1.2220 -0.3600 5 6 1.5358 2.3417 0.4627 6 7 0.4109 2.2630 1.1416 7 14 2.3062 4.0090 0.1219 8 1 2.4052 4.2180 -1.3449 9 1 1.4617 5.0755 0.7174 10 1 3.6637 4.0591 0.7219 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 8 3.3208 -0.7716 -2.0818 14 6 3.6238 -1.0919 -3.4411 15 6 4.5548 -0.0252 -4.0211 16 7 5.8395 -0.0639 -3.3182 17 6 6.9185 -0.9235 -3.8111 18 6 6.0288 0.6913 -2.2180 19 8 5.1356 1.4033 -1.8102 20 6 7.3506 0.6519 -1.4953 21 1 7.8354 -0.3236 -1.4548 22 6 7.5249 1.5786 -0.2895 23 6 8.2484 1.8829 -1.5993 24 6 7.7478 3.0646 -2.4368 25 6 8.3242 2.9367 -3.8517 26 8 9.7455 2.8129 -3.7738 27 6 10.2026 1.6287 -3.1181 28 6 9.7639 1.6608 -1.6492 29 1 -0.3633 0.0915 1.0237 30 1 -0.3634 0.8407 -0.5909 31 1 -0.3634 -0.9321 -0.4325 32 1 -0.0182 3.0706 1.4646 33 1 1.6084 -2.0285 0.5129 34 1 3.1499 -1.1386 0.5132 35 1 1.5060 -1.7541 -1.9823 36 1 2.9180 -2.6953 -1.4450 37 1 2.7016 -1.1230 -4.0213 38 1 4.1134 -2.0646 -3.4847 39 1 4.1022 0.9585 -3.8969 40 1 4.7147 -0.2203 -5.0815 41 1 7.5308 -0.3672 -4.5209 42 1 6.4911 -1.7958 -4.3055 43 1 7.5366 -1.2471 -2.9737 44 1 6.6834 2.2163 -0.0190 45 1 8.1244 1.2126 0.5440 46 1 6.6590 3.0463 -2.4819 47 1 8.0830 3.9996 -1.9879 48 1 8.0676 3.8239 -4.4307 49 1 7.9082 2.0533 -4.3361 50 1 11.2901 1.5798 -3.1720 51 1 9.7744 0.7535 -3.6066 52 1 10.2708 2.4762 -1.1333 53 1 10.0113 0.7139 -1.1693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707236216.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -90.853650 kcal Electronic energy + Delta-G solvation = -32614.361698 eV Core-core repulsion = 28487.459730 eV Total energy + Delta-G solvation = -4126.901969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62918 -39.91126 -38.86584 -37.52674 -37.01278 -36.24485 -33.44308 -32.21831 -31.61943 -30.93600 -29.52971 -27.82483 -27.44642 -25.77164 -24.83399 -24.72606 -23.83363 -22.85846 -22.07366 -20.55107 -19.38757 -18.66994 -18.19982 -17.62466 -17.25781 -17.15683 -16.99370 -16.85863 -16.23383 -16.14156 -15.81538 -15.43812 -15.38147 -15.17098 -14.77969 -14.55701 -14.37552 -14.02650 -13.97667 -13.79130 -13.62832 -13.42613 -13.20464 -13.02381 -12.98165 -12.84750 -12.68799 -12.60149 -12.49867 -12.30936 -12.18922 -12.01859 -11.95496 -11.78370 -11.71986 -11.68431 -11.33333 -11.02876 -10.58399 -10.55319 -10.28062 -10.22343 -9.50139 -8.68159 -7.75024 -5.17910 1.36117 1.39972 1.50790 1.67836 2.11674 2.55781 2.77782 2.93200 3.01027 3.39208 3.47320 3.67872 3.73998 3.75516 3.80348 3.97318 4.03219 4.18136 4.19463 4.24989 4.34004 4.38465 4.44748 4.48566 4.50297 4.56466 4.57850 4.61153 4.66165 4.72724 4.75578 4.80342 4.80760 4.85152 4.85671 4.89129 4.96769 4.98428 5.07813 5.10024 5.14629 5.20054 5.27485 5.36938 5.68363 5.70426 5.93728 6.26495 6.45875 6.54446 6.65704 7.27330 7.50206 7.98197 8.37892 9.29430 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004114 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.519860 B = 6805.114417 C = 8130.228535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.613 5.613 3 C -0.210 4.210 4 H 0.075 0.925 5 C -0.062 4.062 6 N -0.949 5.949 7 Si 0.955 3.045 8 H -0.296 1.296 9 H -0.292 1.292 10 H -0.288 1.288 11 C 0.149 3.851 12 C 0.054 3.946 13 O -0.380 6.380 14 C 0.039 3.961 15 C 0.122 3.878 16 N -0.612 5.612 17 C 0.076 3.924 18 C 0.529 3.471 19 O -0.554 6.554 20 C -0.173 4.173 21 H 0.152 0.848 22 C -0.157 4.157 23 C -0.083 4.083 24 C -0.132 4.132 25 C 0.076 3.924 26 O -0.397 6.397 27 C 0.058 3.942 28 C -0.110 4.110 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.032 0.968 32 H 0.242 0.758 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.128 0.872 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.117 0.883 51 H 0.065 0.935 52 H 0.079 0.921 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.789 -10.938 -13.853 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.336 5.336 3 C -0.341 4.341 4 H 0.093 0.907 5 C -0.254 4.254 6 N -0.599 5.599 7 Si 0.787 3.213 8 H -0.224 1.224 9 H -0.218 1.218 10 H -0.215 1.215 11 C 0.023 3.977 12 C -0.025 4.025 13 O -0.299 6.299 14 C -0.039 4.039 15 C -0.001 4.001 16 N -0.346 5.346 17 C -0.066 4.066 18 C 0.318 3.682 19 O -0.431 6.431 20 C -0.193 4.193 21 H 0.169 0.831 22 C -0.195 4.195 23 C -0.084 4.084 24 C -0.169 4.169 25 C -0.001 4.001 26 O -0.316 6.316 27 C -0.018 4.018 28 C -0.147 4.147 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.146 0.854 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.073 0.927 50 H 0.135 0.865 51 H 0.083 0.917 52 H 0.097 0.903 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.417 -10.150 -13.566 27.308 hybrid contribution -0.906 0.914 0.253 1.312 sum 20.511 -9.236 -13.312 26.138 Atomic orbital electron populations 1.20527 0.82914 0.95673 0.97618 1.44114 1.01925 1.01823 1.85786 1.19628 0.98076 0.85995 1.30421 0.90680 1.25475 0.99027 1.00699 1.00240 1.70201 1.21212 1.26613 1.41874 0.85495 0.77260 0.81572 0.76979 1.22357 1.21802 1.21479 1.20944 0.95477 0.87626 0.93695 1.23168 0.92397 0.91515 0.95470 1.88260 1.66975 1.49848 1.24800 1.23029 0.98104 0.98433 0.84317 1.21485 0.83144 0.98881 0.96611 1.47716 1.14614 1.44583 1.27672 1.22040 0.89447 0.94412 1.00667 1.20058 0.88332 0.79375 0.80449 1.90854 1.45086 1.41578 1.65577 1.22486 0.95545 0.98165 1.03149 0.83085 1.23015 1.02218 1.01966 0.92271 1.21451 0.94620 0.93739 0.98601 1.21887 1.00066 0.97756 0.97231 1.22457 0.80977 1.02168 0.94460 1.87848 1.21205 1.44111 1.78472 1.22838 1.00921 0.87294 0.90738 1.21892 0.89748 1.04243 0.98821 0.97533 0.97239 0.94925 0.94906 0.90875 0.94674 0.94884 0.92049 0.93037 0.91767 0.93288 0.85448 0.91393 0.89287 0.90034 0.91697 0.85652 0.93063 0.91000 0.88645 0.92655 0.86546 0.91667 0.90259 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.51 8.98 127.77 1.15 10.66 16 2 N -0.61 -33.94 2.90 -726.96 -2.11 -36.05 16 3 C -0.21 -13.12 9.21 84.03 0.77 -12.35 16 4 H 0.08 4.92 6.44 -2.91 -0.02 4.90 16 5 C -0.06 -3.95 5.09 84.86 0.43 -3.52 16 6 N -0.95 -61.90 10.72 21.65 0.23 -61.67 16 7 Si 0.96 53.90 29.57 68.60 2.03 55.93 16 8 H -0.30 -16.89 7.11 99.48 0.71 -16.19 16 9 H -0.29 -15.93 7.11 99.48 0.71 -15.22 16 10 H -0.29 -16.18 7.11 99.48 0.71 -15.48 16 11 C 0.15 6.55 6.07 86.38 0.52 7.07 16 12 C 0.05 1.97 6.28 71.98 0.45 2.42 16 13 O -0.38 -15.32 8.37 -141.60 -1.18 -16.50 16 14 C 0.04 1.10 6.28 71.98 0.45 1.55 16 15 C 0.12 3.17 5.86 86.38 0.51 3.68 16 16 N -0.61 -14.95 2.86 -846.76 -2.42 -17.37 16 17 C 0.08 0.96 10.27 127.77 1.31 2.28 16 18 C 0.53 17.23 5.87 87.66 0.51 17.74 16 19 O -0.55 -25.64 12.97 4.34 0.06 -25.58 16 20 C -0.17 -4.23 4.93 -11.61 -0.06 -4.28 16 21 H 0.15 2.59 6.54 -2.38 -0.02 2.57 16 22 C -0.16 -4.38 9.52 30.52 0.29 -4.09 16 23 C -0.08 -1.86 2.03 -52.21 -0.11 -1.97 16 24 C -0.13 -3.48 5.58 30.78 0.17 -3.31 16 25 C 0.08 1.61 6.84 72.09 0.49 2.11 16 26 O -0.40 -7.92 10.69 -148.98 -1.59 -9.51 16 27 C 0.06 0.75 6.85 72.09 0.49 1.25 16 28 C -0.11 -1.57 5.92 30.79 0.18 -1.39 16 29 H 0.01 0.37 7.35 -2.38 -0.02 0.35 16 30 H 0.01 0.52 7.33 -2.39 -0.02 0.51 16 31 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 32 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.07 2.81 8.07 -2.39 -0.02 2.79 16 34 H 0.03 1.64 8.04 -2.39 -0.02 1.62 16 35 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.73 7.42 -2.39 -0.02 1.71 16 40 H 0.13 2.08 8.07 -2.39 -0.02 2.06 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 43 H 0.08 0.85 6.04 -2.39 -0.01 0.84 16 44 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 45 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.05 1.76 6.15 -2.39 -0.01 1.74 16 47 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.10 0.98 8.08 -2.38 -0.02 0.96 16 Total: -1.00 -87.14 414.30 3.46 -83.68 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.87 Total: 9.22 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 7.58 Total: 17.85 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.30 Total: -115.08 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -2.72 Total: -51.59 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 2.03 Total: 55.93 kcal Total: -87.14 3.46 -83.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707236216.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.172 kcal (2) G-P(sol) polarization free energy of solvation -87.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds