Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99895 * 2 1 4 4 C 1.53007 * 109.47073 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.54322 * 305.05512 * 4 3 2 6 6 O 1.21273 * 120.00039 * 126.64062 * 5 4 3 7 7 N 1.34776 * 119.99661 * 306.63440 * 5 4 3 8 8 C 1.46920 * 120.63327 * 354.95008 * 7 5 4 9 9 C 1.53195 * 108.77402 * 233.62554 * 8 7 5 10 10 C 1.53033 * 109.34087 * 305.37789 * 9 8 7 11 11 C 1.53037 * 109.53764 * 61.31643 * 10 9 8 12 12 H 1.08998 * 109.50124 * 58.65468 * 11 10 9 13 13 C 1.53006 * 109.49808 * 178.71848 * 11 10 9 14 14 N 1.46504 * 109.46902 * 294.93380 * 13 11 10 15 15 C 1.36932 * 119.99831 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00130 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99892 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99892 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99886 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46935 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47203 * 299.99642 * 19 17 15 22 22 H 1.48500 * 109.47140 * 60.00192 * 19 17 15 23 23 C 1.46929 * 120.62626 * 174.96203 * 7 5 4 24 24 C 1.53177 * 109.54068 * 65.22785 * 4 3 2 25 25 C 1.53279 * 109.06332 * 176.85290 * 24 4 3 26 26 O 1.42910 * 109.45935 * 302.44586 * 25 24 4 27 27 C 1.42901 * 114.09622 * 61.15571 * 26 25 24 28 28 C 1.53091 * 109.41783 * 298.84412 * 27 26 25 29 29 H 1.08999 * 109.47208 * 300.00128 * 1 2 3 30 30 H 1.08994 * 109.46949 * 60.00562 * 1 2 3 31 31 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47143 * 60.00293 * 3 2 1 33 33 H 1.08994 * 109.47213 * 299.99733 * 3 2 1 34 34 H 1.09003 * 109.58821 * 353.41416 * 8 7 5 35 35 H 1.08998 * 109.59169 * 113.69349 * 8 7 5 36 36 H 1.08999 * 109.50094 * 65.31828 * 9 8 7 37 37 H 1.09006 * 109.49688 * 185.40865 * 9 8 7 38 38 H 1.09006 * 109.43335 * 301.31528 * 10 9 8 39 39 H 1.09004 * 109.48937 * 181.35561 * 10 9 8 40 40 H 1.09004 * 109.46828 * 174.93619 * 13 11 10 41 41 H 1.08998 * 109.47000 * 54.93570 * 13 11 10 42 42 H 0.97001 * 119.99780 * 359.97438 * 14 13 11 43 43 H 0.96997 * 119.99764 * 0.02562 * 18 17 15 44 44 H 1.08993 * 109.58737 * 6.58987 * 23 7 5 45 45 H 1.09003 * 109.58553 * 246.15645 * 23 7 5 46 46 H 1.09000 * 109.52517 * 296.84447 * 24 4 3 47 47 H 1.09003 * 109.52285 * 57.03061 * 24 4 3 48 48 H 1.09000 * 109.45786 * 182.45388 * 25 24 4 49 49 H 1.08997 * 109.46275 * 62.44118 * 25 24 4 50 50 H 1.09004 * 109.47772 * 178.85980 * 27 26 25 51 51 H 1.09007 * 109.47997 * 58.82713 * 27 26 25 52 52 H 1.09003 * 109.51742 * 297.70199 * 28 27 26 53 53 H 1.08997 * 109.52186 * 177.51773 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9732 0.3319 1.1635 6 8 4.6934 -0.6256 0.9761 7 7 3.5642 0.6335 2.4118 8 6 2.7837 1.8512 2.6702 9 6 3.4775 2.6567 3.7732 10 6 3.6777 1.7662 5.0015 11 6 4.5720 0.5801 4.6335 12 1 5.5308 0.9472 4.2674 13 6 4.7978 -0.2923 5.8700 14 7 5.5537 0.4651 6.8706 15 6 5.8766 -0.1151 8.0682 16 1 5.5737 -1.1308 8.2752 17 6 6.5923 0.6028 9.0165 18 7 6.9610 1.8409 8.7644 19 14 7.0323 -0.1884 10.6505 20 1 7.7927 0.7801 11.4807 21 1 5.7889 -0.5810 11.3611 22 1 7.8657 -1.3935 10.4085 23 6 3.8907 -0.2490 3.5402 24 6 3.9990 0.5410 -1.3098 25 6 5.5310 0.4972 -1.3315 26 8 6.0474 1.8213 -1.1824 27 6 5.6837 2.4544 0.0460 28 6 4.1597 2.5780 0.1233 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 2.7281 2.4494 1.7607 35 1 1.7780 1.5795 2.9908 36 1 4.4463 3.0049 3.4150 37 1 2.8592 3.5134 4.0417 38 1 2.7105 1.3989 5.3448 39 1 4.1495 2.3439 5.7965 40 1 5.3590 -1.1833 5.5884 41 1 3.8349 -0.5863 6.2879 42 1 5.8260 1.3773 6.6845 43 1 6.7322 2.2518 7.9161 44 1 4.5655 -1.0365 3.2048 45 1 2.9760 -0.6920 3.9342 46 1 3.6025 -0.4720 -1.3783 47 1 3.6398 1.1315 -2.1527 48 1 5.8689 0.0800 -2.2802 49 1 5.8882 -0.1266 -0.5121 50 1 6.1316 3.4472 0.0898 51 1 6.0428 1.8562 0.8835 52 1 3.8039 3.2096 -0.6907 53 1 3.8782 3.0205 1.0787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713232521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = -125.723736 kcal Electronic energy + Delta-G solvation = -32610.831718 eV Core-core repulsion = 28482.417669 eV Total energy + Delta-G solvation = -4128.414049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48328 -39.97119 -38.75619 -38.61610 -36.98980 -35.60961 -34.34813 -33.03564 -32.19520 -31.43946 -29.23309 -27.32882 -27.05436 -26.68058 -24.98257 -24.65906 -24.03851 -23.14829 -22.58980 -21.13432 -19.87401 -19.42576 -18.03500 -17.70070 -17.24467 -17.14509 -16.85792 -16.78894 -16.57661 -16.27343 -16.00927 -15.74483 -15.68244 -15.37445 -15.31988 -14.86844 -14.72859 -14.59646 -14.36087 -13.96742 -13.72669 -13.57676 -13.25080 -13.14409 -12.92665 -12.90326 -12.79248 -12.62658 -12.39957 -12.30128 -12.17544 -11.91606 -11.87269 -11.77179 -11.64215 -11.51870 -11.46588 -11.28538 -10.95730 -10.81251 -10.41733 -10.32185 -9.68285 -9.15041 -8.43942 -5.37540 1.55362 1.56593 1.66677 1.83279 1.87333 2.66060 2.68929 2.88888 3.20422 3.35872 3.55632 3.59265 3.63792 3.66322 3.79784 3.83900 3.91590 3.96148 4.10620 4.20096 4.23968 4.24732 4.28858 4.38106 4.41198 4.50522 4.52743 4.54374 4.57567 4.59977 4.63383 4.68506 4.71182 4.74327 4.74845 4.84621 4.85776 4.88212 4.97406 5.04565 5.07455 5.11141 5.14221 5.26943 5.37027 5.45143 5.54199 6.16738 6.18476 6.37650 6.46051 7.05267 7.11378 7.95514 8.07012 9.08068 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.002815 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.322425 B = 9943.042278 C =10558.652503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.056 3.944 4 C -0.075 4.075 5 C 0.528 3.472 6 O -0.579 6.579 7 N -0.602 5.602 8 C 0.085 3.915 9 C -0.130 4.130 10 C -0.106 4.106 11 C -0.091 4.091 12 H 0.049 0.951 13 C 0.165 3.835 14 N -0.752 5.752 15 C -0.339 4.339 16 H 0.064 0.936 17 C -0.102 4.102 18 N -0.972 5.972 19 Si 1.129 2.871 20 H -0.290 1.290 21 H -0.275 1.275 22 H -0.280 1.280 23 C 0.130 3.870 24 C -0.116 4.116 25 C 0.043 3.957 26 O -0.394 6.394 27 C 0.055 3.945 28 C -0.149 4.149 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.007 0.993 41 H 0.026 0.974 42 H 0.362 0.638 43 H 0.244 0.756 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.050 0.950 50 H 0.119 0.881 51 H 0.020 0.980 52 H 0.118 0.882 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 4.707 -23.657 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.020 4.020 4 C -0.078 4.078 5 C 0.318 3.682 6 O -0.458 6.458 7 N -0.333 5.333 8 C -0.035 4.035 9 C -0.168 4.168 10 C -0.143 4.143 11 C -0.111 4.111 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.397 5.397 15 C -0.471 4.471 16 H 0.082 0.918 17 C -0.293 4.293 18 N -0.620 5.620 19 Si 0.953 3.047 20 H -0.216 1.216 21 H -0.201 1.201 22 H -0.207 1.207 23 C 0.007 3.993 24 C -0.154 4.154 25 C -0.033 4.033 26 O -0.313 6.313 27 C -0.022 4.022 28 C -0.186 4.186 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.044 0.956 42 H 0.195 0.805 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.068 0.932 50 H 0.137 0.863 51 H 0.039 0.961 52 H 0.137 0.863 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.448 4.107 -22.410 27.527 hybrid contribution -0.514 -0.434 -0.923 1.142 sum -15.962 3.673 -23.333 28.508 Atomic orbital electron populations 1.22891 0.79204 1.03442 1.01275 1.87924 1.21576 1.28134 1.95655 1.23104 0.89345 0.85701 1.03818 1.20963 0.96721 0.96545 0.93579 1.20858 0.78493 0.84700 0.84178 1.90602 1.38596 1.31904 1.84743 1.48039 1.54184 1.24818 1.06261 1.22671 0.95057 0.85083 1.00728 1.21966 1.01871 0.98574 0.94345 1.21442 0.99231 0.95630 0.98038 1.21472 0.98767 0.96738 0.94140 0.93198 1.20638 0.93948 0.93317 0.88344 1.42509 1.66991 1.14362 1.15838 1.20401 1.32702 0.98959 0.95003 0.91804 1.27251 0.98562 0.96594 1.06906 1.70996 1.51088 1.14383 1.25520 0.82623 0.76597 0.74042 0.71445 1.21604 1.20097 1.20671 1.21319 1.00046 0.92371 0.85592 1.21936 0.95991 1.01958 0.95531 1.22940 0.93767 0.83790 1.02789 1.87875 1.74978 1.29503 1.38985 1.22665 0.94924 0.98731 0.85884 1.22567 0.95726 0.93851 1.06418 0.92915 0.92282 0.89705 0.89608 0.89459 0.85578 0.89497 0.91956 0.87601 0.91226 0.93616 0.97459 0.95586 0.80550 0.94608 0.91537 0.90275 0.91211 0.88330 0.87974 0.93208 0.86293 0.96142 0.86350 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.43 9.80 -148.98 -1.46 -8.89 16 3 C 0.06 0.71 4.41 71.98 0.32 1.03 16 4 C -0.07 -1.35 0.34 -52.81 -0.02 -1.37 16 5 C 0.53 14.06 4.75 87.66 0.42 14.48 16 6 O -0.58 -20.57 13.07 -3.01 -0.04 -20.61 16 7 N -0.60 -14.52 2.96 -818.91 -2.42 -16.94 16 8 C 0.09 1.34 4.05 86.36 0.35 1.69 16 9 C -0.13 -2.42 5.95 30.67 0.18 -2.23 16 10 C -0.11 -2.97 5.06 30.62 0.15 -2.82 16 11 C -0.09 -3.05 2.37 -10.71 -0.03 -3.08 16 12 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 13 C 0.16 6.99 5.65 86.38 0.49 7.47 16 14 N -0.75 -39.49 5.32 -343.44 -1.83 -41.32 16 15 C -0.34 -19.82 9.99 84.03 0.84 -18.98 16 16 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 17 C -0.10 -6.05 5.50 84.86 0.47 -5.58 16 18 N -0.97 -61.64 13.70 21.65 0.30 -61.35 16 19 Si 1.13 52.85 29.92 68.60 2.05 54.90 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.13 3.85 5.73 86.36 0.49 4.35 16 24 C -0.12 -2.28 4.46 30.75 0.14 -2.14 16 25 C 0.04 1.04 6.56 72.08 0.47 1.51 16 26 O -0.39 -9.49 10.77 -148.98 -1.60 -11.10 16 27 C 0.05 1.10 6.62 72.01 0.48 1.58 16 28 C -0.15 -2.01 4.62 30.68 0.14 -1.87 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 0.77 4.56 -2.39 -0.01 0.76 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.13 1.28 2.47 -2.39 -0.01 1.27 16 35 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.05 1.56 7.16 -2.38 -0.02 1.55 16 40 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.36 19.46 5.69 -92.71 -0.53 18.93 16 43 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 44 H 0.07 2.32 7.00 -2.39 -0.02 2.30 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 1.61 7.89 -2.39 -0.02 1.59 16 47 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 49 H 0.05 1.54 5.58 -2.39 -0.01 1.53 16 50 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 51 H 0.02 0.54 7.38 -2.38 -0.02 0.52 16 52 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.11 1.12 4.95 -2.39 -0.01 1.11 16 Total: -1.00 -79.71 391.37 1.66 -78.05 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.52 Total: 31.66 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.14 Total: -4.41 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -3.95 Total: -119.60 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -3.10 Total: -40.59 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -79.71 1.66 -78.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713232521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.674 kcal (2) G-P(sol) polarization free energy of solvation -79.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds