Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00124 * 2 1 4 4 C 1.52994 * 109.47466 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.46603 * 65.00129 * 4 3 2 6 6 C 1.42903 * 113.99692 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46967 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99655 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.63107 * 2.40111 * 9 7 6 11 11 C 1.53196 * 108.77548 * 126.38984 * 10 9 7 12 12 C 1.53045 * 109.31290 * 54.63327 * 11 10 9 13 13 C 1.53040 * 109.53824 * 298.63319 * 12 11 10 14 14 C 1.46932 * 120.63077 * 182.39824 * 9 7 6 15 15 H 1.08996 * 109.70585 * 113.75556 * 14 9 7 16 16 C 1.52996 * 109.58208 * 353.39709 * 14 9 7 17 17 H 1.08997 * 110.00273 * 53.30718 * 16 14 9 18 18 C 1.54321 * 109.88407 * 292.20594 * 16 14 9 19 19 C 1.55161 * 102.94455 * 218.39336 * 18 16 14 20 20 C 1.54912 * 101.58041 * 35.50030 * 19 18 16 21 21 N 1.47025 * 109.88094 * 174.40168 * 16 14 9 22 22 C 1.36947 * 125.64663 * 298.62545 * 21 16 14 23 23 H 1.07998 * 119.99311 * 345.25765 * 22 21 16 24 24 C 1.38807 * 119.99826 * 165.25539 * 22 21 16 25 25 N 1.31611 * 120.00417 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47110 * 60.00501 * 26 24 22 28 28 H 1.48497 * 109.47275 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47231 * 300.00447 * 26 24 22 30 30 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46681 * 299.99790 * 1 2 3 32 32 H 1.09001 * 109.47008 * 59.99482 * 1 2 3 33 33 H 1.09003 * 109.47060 * 60.00100 * 3 2 1 34 34 H 1.09001 * 109.47769 * 300.00626 * 3 2 1 35 35 H 1.09004 * 109.47367 * 305.00713 * 4 3 2 36 36 H 1.08995 * 109.47563 * 185.00261 * 4 3 2 37 37 H 1.09004 * 109.46956 * 60.00822 * 6 5 4 38 38 H 1.09002 * 109.47274 * 300.00294 * 6 5 4 39 39 H 1.08997 * 109.59060 * 6.60337 * 10 9 7 40 40 H 1.09000 * 109.58282 * 246.17370 * 10 9 7 41 41 H 1.09002 * 109.49550 * 294.68183 * 11 10 9 42 42 H 1.08998 * 109.52588 * 174.59954 * 11 10 9 43 43 H 1.08999 * 109.45802 * 178.61526 * 12 11 10 44 44 H 1.08997 * 109.44850 * 58.64779 * 12 11 10 45 45 H 1.08999 * 109.49860 * 301.41798 * 13 12 11 46 46 H 1.09002 * 109.52139 * 181.33106 * 13 12 11 47 47 H 1.09001 * 110.71784 * 100.03167 * 18 16 14 48 48 H 1.08993 * 110.87412 * 336.82560 * 18 16 14 49 49 H 1.09006 * 110.99960 * 277.43144 * 19 18 16 50 50 H 1.08996 * 111.00410 * 153.57544 * 19 18 16 51 51 H 1.09001 * 110.36662 * 204.15427 * 20 19 18 52 52 H 1.09002 * 110.45587 * 81.87829 * 20 19 18 53 53 H 0.96998 * 120.00266 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9657 0.5792 -1.2202 6 6 5.3822 0.4197 -1.3222 7 6 5.7214 -0.2252 -2.6413 8 8 4.8372 -0.5189 -3.4178 9 7 7.0073 -0.4747 -2.9585 10 6 8.0853 -0.1719 -2.0072 11 6 8.9306 -1.4330 -1.8021 12 6 9.4162 -1.9433 -3.1608 13 6 8.2112 -2.3059 -4.0318 14 6 7.3578 -1.0547 -4.2622 15 1 7.9233 -0.3294 -4.8471 16 6 6.0809 -1.4360 -5.0138 17 1 5.4093 -0.5792 -5.0666 18 6 5.3799 -2.6088 -4.2963 19 6 4.8534 -3.4717 -5.4735 20 6 5.9825 -3.2934 -6.5191 21 7 6.4166 -1.8924 -6.3705 22 6 7.0356 -1.1422 -7.3346 23 1 7.1065 -0.0704 -7.2219 24 6 7.5717 -1.7592 -8.4564 25 7 7.4848 -3.0653 -8.5938 26 14 8.4153 -0.7358 -9.7718 27 1 9.5674 -0.0141 -9.1743 28 1 8.8978 -1.6260 -10.8581 29 1 7.4510 0.2465 -10.3290 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8508 0.5684 0.8426 36 1 3.9784 2.1765 0.0903 37 1 5.7362 -0.2122 -0.5076 38 1 5.8631 1.3959 -1.2602 39 1 7.6557 0.1389 -1.0549 40 1 8.7110 0.6265 -2.4061 41 1 8.3265 -2.2013 -1.3196 42 1 9.7895 -1.1976 -1.1738 43 1 10.0382 -2.8265 -3.0157 44 1 9.9993 -1.1653 -3.6534 45 1 7.6139 -3.0660 -3.5282 46 1 8.5577 -2.6916 -4.9906 47 1 4.5541 -2.2477 -3.6834 48 1 6.0891 -3.1736 -3.6914 49 1 3.9073 -3.0830 -5.8502 50 1 4.7553 -4.5164 -5.1788 51 1 5.5993 -3.4672 -7.5246 52 1 6.8092 -3.9713 -6.3064 53 1 7.8592 -3.4964 -9.3780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713269534.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -83.005117 kcal Electronic energy + Delta-G solvation = -32357.472129 eV Core-core repulsion = 28230.910498 eV Total energy + Delta-G solvation = -4126.561631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86176 -39.52050 -38.77850 -38.11219 -37.73123 -34.56853 -33.83227 -32.69510 -31.46689 -31.12166 -29.02261 -28.12058 -27.06772 -26.50009 -25.51805 -24.10352 -23.44764 -22.29658 -21.66443 -21.26705 -19.53943 -19.00508 -17.99365 -17.76112 -17.53713 -17.00504 -16.77092 -16.70538 -16.33228 -16.07467 -15.94652 -15.67163 -15.60309 -15.10578 -15.01422 -14.60789 -14.41447 -14.23481 -13.89179 -13.61236 -13.52297 -13.35768 -13.06766 -12.97494 -12.87068 -12.75009 -12.65188 -12.50655 -12.29372 -12.07039 -11.98131 -11.93830 -11.89670 -11.65051 -11.54990 -11.32345 -11.17388 -11.04628 -10.66132 -10.62956 -10.55802 -9.94967 -9.34953 -8.65542 -7.81570 -5.17870 1.43239 1.46775 1.53039 1.73101 1.83322 2.51414 2.90061 2.93215 3.34633 3.64986 3.79671 3.93617 3.95843 4.02686 4.12960 4.15973 4.22691 4.25765 4.26766 4.33705 4.36246 4.39824 4.47497 4.48696 4.49396 4.56895 4.60137 4.62982 4.71348 4.81224 4.82904 4.86937 4.87592 4.91191 5.04069 5.06289 5.12359 5.24477 5.29488 5.30813 5.36636 5.48468 5.55579 5.63145 5.70491 5.77559 5.88759 6.13967 6.27319 6.32000 6.64072 7.14191 7.40980 7.85217 8.55222 9.29120 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.003337 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.083047 B = 8389.864759 C = 9369.467369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.056 3.944 4 C 0.057 3.943 5 O -0.395 6.395 6 C 0.054 3.946 7 C 0.486 3.514 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.124 4.124 12 C -0.117 4.117 13 C -0.114 4.114 14 C 0.151 3.849 15 H 0.045 0.955 16 C 0.164 3.836 17 H 0.046 0.954 18 C -0.106 4.106 19 C -0.142 4.142 20 C 0.187 3.813 21 N -0.613 5.613 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.059 4.059 25 N -0.946 5.946 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.076 0.924 51 H 0.028 0.972 52 H -0.001 1.001 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 9.032 25.821 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.020 4.020 4 C -0.019 4.019 5 O -0.314 6.314 6 C -0.025 4.025 7 C 0.275 3.725 8 O -0.418 6.418 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.162 4.162 12 C -0.154 4.154 13 C -0.153 4.153 14 C 0.046 3.954 15 H 0.063 0.937 16 C 0.058 3.942 17 H 0.064 0.936 18 C -0.143 4.143 19 C -0.181 4.181 20 C 0.062 3.938 21 N -0.339 5.339 22 C -0.363 4.363 23 H 0.085 0.915 24 C -0.253 4.253 25 N -0.595 5.595 26 Si 0.800 3.200 27 H -0.200 1.200 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.094 0.906 51 H 0.046 0.954 52 H 0.016 0.984 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.063 8.645 25.085 26.709 hybrid contribution 0.418 0.370 -1.523 1.622 sum -2.645 9.014 23.563 25.366 Atomic orbital electron populations 1.22879 0.79857 1.03472 1.00744 1.87931 1.21208 1.28918 1.95572 1.22763 0.92530 0.84919 1.01807 1.22846 0.93610 0.99003 0.86465 1.88065 1.20848 1.82781 1.39735 1.22334 0.83512 1.02084 0.94591 1.20979 0.82389 0.79713 0.89375 1.90711 1.48904 1.51116 1.51028 1.48231 1.06196 1.62514 1.16803 1.22111 0.88840 0.98044 0.93214 1.21890 1.00621 0.97335 0.96371 1.21524 0.96350 1.01332 0.96239 1.21792 0.97112 0.96933 0.99430 1.21544 0.97269 0.94167 0.82433 0.93727 1.21640 0.92398 0.96722 0.83401 0.93626 1.22910 0.99935 0.94933 0.96566 1.22928 0.98099 0.99578 0.97466 1.21079 0.92022 0.85276 0.95448 1.44939 1.69050 1.10720 1.09172 1.19170 1.27952 0.90079 0.99051 0.91496 1.25632 1.01516 0.96763 1.01354 1.70147 1.50922 1.08918 1.29497 0.85261 0.78666 0.77469 0.78607 1.20028 1.21887 1.20849 0.89371 0.92031 0.94182 0.88630 0.93396 0.91147 0.88678 0.87733 0.87533 0.86434 0.90459 0.91469 0.87561 0.91260 0.92422 0.91971 0.94302 0.89733 0.91736 0.93337 0.90551 0.95384 0.98351 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -9.77 10.67 -144.33 -1.54 -11.31 16 3 C 0.06 0.95 6.32 71.98 0.45 1.41 16 4 C 0.06 0.90 6.32 71.98 0.45 1.36 16 5 O -0.40 -10.34 9.84 -125.55 -1.24 -11.58 16 6 C 0.05 1.10 4.78 71.24 0.34 1.44 16 7 C 0.49 15.28 7.31 87.66 0.64 15.92 16 8 O -0.54 -22.71 9.41 16.01 0.15 -22.56 16 9 N -0.60 -17.61 2.95 -795.00 -2.34 -19.95 16 10 C 0.10 1.76 6.34 86.36 0.55 2.30 16 11 C -0.12 -2.16 6.08 30.67 0.19 -1.98 16 12 C -0.12 -3.03 5.88 30.62 0.18 -2.85 16 13 C -0.11 -4.20 4.96 30.67 0.15 -4.05 16 14 C 0.15 5.95 2.70 44.97 0.12 6.07 16 15 H 0.04 1.98 7.82 -2.39 -0.02 1.96 16 16 C 0.16 7.80 2.29 45.34 0.10 7.90 16 17 H 0.05 2.47 5.81 -15.30 -0.09 2.39 16 18 C -0.11 -4.60 5.10 31.78 0.16 -4.43 16 19 C -0.14 -6.48 7.09 31.99 0.23 -6.25 16 20 C 0.19 10.26 5.41 86.86 0.47 10.73 16 21 N -0.61 -34.24 2.78 -668.27 -1.86 -36.10 16 22 C -0.23 -13.86 9.69 84.03 0.81 -13.05 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 25 N -0.95 -59.15 10.57 21.65 0.23 -58.92 16 26 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.46 7.59 -2.38 -0.02 1.45 16 38 H 0.11 1.43 8.03 -2.39 -0.02 1.41 16 39 H 0.12 1.14 5.95 -2.39 -0.01 1.13 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.06 2.28 5.52 -2.39 -0.01 2.26 16 46 H 0.04 1.79 7.98 -2.39 -0.02 1.77 16 47 H 0.08 3.76 5.62 -6.98 -0.04 3.72 16 48 H 0.06 2.61 5.20 -2.39 -0.01 2.59 16 49 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 50 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 51 H 0.03 1.71 6.93 -2.39 -0.02 1.69 16 52 H 0.00 -0.09 8.05 -2.39 -0.02 -0.10 16 53 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -82.39 398.45 2.77 -79.61 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.78 Total: 17.95 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.57 Total: 13.15 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.97 Total: -114.97 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -2.62 Total: -45.45 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -82.39 2.77 -79.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713269534.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.390 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds