Wall clock time and date at job start Sat Apr 11 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00074 * 2 1 4 4 C 1.53006 * 109.46910 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47437 * 64.99648 * 4 3 2 6 6 C 1.42900 * 113.99955 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46816 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99658 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63223 * 6.48509 * 9 7 6 11 11 C 1.53188 * 108.77339 * 233.58711 * 10 9 7 12 12 C 1.53045 * 109.31440 * 305.36254 * 11 10 9 13 13 C 1.53043 * 109.53693 * 61.36623 * 12 11 10 14 14 C 1.46926 * 120.62670 * 186.46293 * 9 7 6 15 15 H 1.09006 * 109.70264 * 246.27159 * 14 9 7 16 16 C 1.53002 * 109.59093 * 6.62242 * 14 9 7 17 17 H 1.09000 * 109.87249 * 302.25211 * 16 14 9 18 18 C 1.54324 * 109.87820 * 63.26969 * 16 14 9 19 19 C 1.55154 * 102.94473 * 141.76676 * 18 16 14 20 20 C 1.54909 * 101.61207 * 324.47538 * 19 18 16 21 21 N 1.47014 * 110.01108 * 181.14935 * 16 14 9 22 22 C 1.36940 * 125.64968 * 61.53909 * 21 16 14 23 23 H 1.08007 * 119.99748 * 14.64728 * 22 21 16 24 24 C 1.38813 * 120.00458 * 194.65403 * 22 21 16 25 25 N 1.31620 * 119.99517 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00087 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47153 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47126 * 119.99971 * 26 24 22 29 29 H 1.48505 * 109.46567 * 239.99722 * 26 24 22 30 30 H 1.08999 * 109.47044 * 300.00878 * 1 2 3 31 31 H 1.09004 * 109.46990 * 60.00606 * 1 2 3 32 32 H 1.09000 * 109.47658 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47324 * 59.99593 * 3 2 1 34 34 H 1.09007 * 109.46862 * 299.99531 * 3 2 1 35 35 H 1.09002 * 109.46758 * 304.99801 * 4 3 2 36 36 H 1.09001 * 109.46888 * 184.99747 * 4 3 2 37 37 H 1.09000 * 109.46807 * 60.00054 * 6 5 4 38 38 H 1.08998 * 109.47263 * 300.00123 * 6 5 4 39 39 H 1.08999 * 109.58614 * 113.79666 * 10 9 7 40 40 H 1.09000 * 109.58409 * 353.36817 * 10 9 7 41 41 H 1.08999 * 109.49584 * 185.41377 * 11 10 9 42 42 H 1.09001 * 109.50165 * 65.31539 * 11 10 9 43 43 H 1.09002 * 109.45896 * 301.35111 * 12 11 10 44 44 H 1.08994 * 109.45284 * 181.37896 * 12 11 10 45 45 H 1.08998 * 109.49903 * 178.68551 * 13 12 11 46 46 H 1.09000 * 109.52083 * 58.60107 * 13 12 11 47 47 H 1.08999 * 110.72380 * 23.39463 * 18 16 14 48 48 H 1.09007 * 110.71890 * 260.12781 * 18 16 14 49 49 H 1.08997 * 111.00222 * 82.56468 * 19 18 16 50 50 H 1.08996 * 111.00562 * 206.38487 * 19 18 16 51 51 H 1.09008 * 110.36540 * 155.86739 * 20 19 18 52 52 H 1.09000 * 110.36859 * 278.18626 * 20 19 18 53 53 H 0.97002 * 119.99474 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5794 -1.2219 6 6 5.3813 0.4199 -1.3249 7 6 5.7194 -0.2247 -2.6445 8 8 4.8348 -0.5181 -3.4205 9 7 7.0051 -0.4751 -2.9622 10 6 8.0752 -0.2575 -1.9793 11 6 9.1386 0.6528 -2.6016 12 6 9.6136 0.0457 -3.9238 13 6 8.4345 -0.0531 -4.8944 14 6 7.3630 -0.9713 -4.2981 15 1 7.7532 -1.9862 -4.2207 16 6 6.1244 -0.9653 -5.1964 17 1 5.3397 -1.5758 -4.7496 18 6 5.6206 0.4810 -5.3857 19 6 5.1720 0.5012 -6.8709 20 6 6.2236 -0.4280 -7.5269 21 7 6.4662 -1.4862 -6.5280 22 6 6.9332 -2.7451 -6.7968 23 1 6.8577 -3.5203 -6.0485 24 6 7.5039 -3.0250 -8.0308 25 7 7.5956 -2.0805 -8.9428 26 14 8.1402 -4.7426 -8.3977 27 1 7.9202 -5.6148 -7.2161 28 1 7.4145 -5.3001 -9.5670 29 1 9.5925 -4.6779 -8.7012 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8514 0.5681 0.8410 36 1 3.9786 2.1764 0.0889 37 1 5.7358 -0.2121 -0.5107 38 1 5.8623 1.3961 -1.2631 39 1 8.5244 -1.2135 -1.7105 40 1 7.6628 0.2180 -1.0894 41 1 9.9836 0.7445 -1.9192 42 1 8.7111 1.6382 -2.7866 43 1 10.0184 -0.9498 -3.7417 44 1 10.3879 0.6791 -4.3566 45 1 8.7781 -0.4638 -5.8438 46 1 8.0134 0.9388 -5.0582 47 1 6.4262 1.1954 -5.2164 48 1 4.7776 0.6853 -4.7255 49 1 4.1673 0.0932 -6.9810 50 1 5.2297 1.5086 -7.2828 51 1 5.8285 -0.8577 -8.4475 52 1 7.1430 0.1219 -7.7280 53 1 7.9946 -2.2760 -9.8051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713269535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:03 Heat of formation + Delta-G solvation = -86.004648 kcal Electronic energy + Delta-G solvation = -32363.708288 eV Core-core repulsion = 28237.016587 eV Total energy + Delta-G solvation = -4126.691700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88128 -39.51502 -38.77500 -38.11717 -37.73970 -34.55011 -33.82786 -32.70181 -31.46850 -31.10762 -29.01110 -28.15293 -27.07393 -26.50741 -25.51989 -24.06471 -23.44567 -22.28284 -21.64843 -21.27796 -19.58343 -18.99637 -17.98714 -17.77484 -17.55291 -17.00986 -16.85275 -16.56809 -16.33174 -16.10203 -15.94451 -15.71813 -15.53544 -15.09086 -15.00034 -14.62473 -14.47822 -14.20013 -13.90503 -13.66278 -13.49650 -13.34122 -13.08995 -12.97546 -12.86760 -12.72404 -12.70150 -12.52946 -12.30302 -12.02220 -11.97110 -11.90660 -11.89124 -11.64461 -11.56531 -11.30392 -11.17980 -11.11027 -10.68412 -10.62856 -10.56309 -9.99029 -9.34827 -8.67198 -7.82602 -5.18415 1.42963 1.44132 1.54539 1.71426 1.83523 2.50607 2.90040 2.93165 3.34112 3.64782 3.79624 3.93615 3.96121 4.02503 4.12607 4.16091 4.22374 4.25805 4.27002 4.33822 4.36493 4.38324 4.47262 4.48089 4.49407 4.56696 4.60270 4.62930 4.71956 4.80179 4.83227 4.86319 4.87039 4.91089 5.05033 5.06646 5.12873 5.23545 5.28652 5.31891 5.36684 5.48799 5.54984 5.62759 5.69949 5.77248 5.87508 6.14053 6.26922 6.32110 6.63880 7.13961 7.39024 7.84405 8.54098 9.28424 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003342 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.743109 B = 8377.424038 C = 9443.937040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.056 3.944 4 C 0.057 3.943 5 O -0.395 6.395 6 C 0.054 3.946 7 C 0.489 3.511 8 O -0.541 6.541 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.152 3.848 15 H 0.041 0.959 16 C 0.162 3.838 17 H 0.043 0.957 18 C -0.107 4.107 19 C -0.142 4.142 20 C 0.187 3.813 21 N -0.612 5.612 22 C -0.230 4.230 23 H 0.065 0.935 24 C -0.059 4.059 25 N -0.945 5.945 26 Si 0.970 3.030 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.078 0.922 51 H 0.028 0.972 52 H 0.000 1.000 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 12.594 24.614 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.020 4.020 4 C -0.019 4.019 5 O -0.314 6.314 6 C -0.025 4.025 7 C 0.278 3.722 8 O -0.419 6.419 9 N -0.339 5.339 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.155 4.155 13 C -0.148 4.148 14 C 0.046 3.954 15 H 0.059 0.941 16 C 0.056 3.944 17 H 0.061 0.939 18 C -0.145 4.145 19 C -0.180 4.180 20 C 0.061 3.939 21 N -0.338 5.338 22 C -0.360 4.360 23 H 0.083 0.917 24 C -0.252 4.252 25 N -0.594 5.594 26 Si 0.799 3.201 27 H -0.195 1.195 28 H -0.221 1.221 29 H -0.215 1.215 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.046 0.954 52 H 0.018 0.982 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.933 12.099 23.929 26.974 hybrid contribution 0.330 -1.050 -1.061 1.529 sum -2.603 11.049 22.867 25.530 Atomic orbital electron populations 1.22876 0.79854 1.03420 1.00799 1.87933 1.21228 1.29044 1.95583 1.22778 0.92520 0.84859 1.01887 1.22851 0.93633 0.99054 0.86395 1.88063 1.20839 1.82826 1.39690 1.22335 0.83549 1.02189 0.94475 1.20958 0.82376 0.79784 0.89063 1.90704 1.48768 1.51495 1.50920 1.48233 1.06393 1.65570 1.13662 1.22110 0.88043 1.00812 0.91246 1.21889 0.99178 0.98776 0.96260 1.21533 0.96650 1.01233 0.96104 1.21708 0.95854 0.98896 0.98353 1.21527 0.96764 0.95588 0.81487 0.94138 1.21592 0.93110 0.94963 0.84721 0.93921 1.22920 1.00586 0.95296 0.95653 1.22920 0.98428 0.99497 0.97157 1.21108 0.93268 0.87877 0.91619 1.44930 1.76457 1.10247 1.02152 1.19225 1.30590 0.86869 0.99285 0.91674 1.25608 1.01200 1.01262 0.97148 1.70160 1.50449 1.32867 1.05905 0.85129 0.77513 0.79893 0.77565 1.19512 1.22056 1.21472 0.92000 0.94083 0.89498 0.88614 0.93231 0.91335 0.88469 0.88004 0.87157 0.90795 0.86357 0.87622 0.91089 0.92563 0.91249 0.94246 0.92115 0.91687 0.89582 0.93358 0.90367 0.95362 0.98206 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -9.89 10.67 -144.34 -1.54 -11.43 16 3 C 0.06 0.94 6.32 71.98 0.45 1.39 16 4 C 0.06 0.89 6.32 71.98 0.45 1.35 16 5 O -0.39 -10.25 9.84 -125.55 -1.24 -11.49 16 6 C 0.05 1.08 4.78 71.24 0.34 1.42 16 7 C 0.49 15.32 6.93 87.66 0.61 15.92 16 8 O -0.54 -22.83 9.75 16.00 0.16 -22.67 16 9 N -0.60 -17.63 2.93 -795.02 -2.33 -19.97 16 10 C 0.10 1.76 6.35 86.36 0.55 2.31 16 11 C -0.12 -2.08 6.08 30.67 0.19 -1.89 16 12 C -0.12 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.11 -4.02 4.96 30.67 0.15 -3.87 16 14 C 0.15 5.98 2.67 44.98 0.12 6.10 16 15 H 0.04 1.81 7.95 -2.38 -0.02 1.79 16 16 C 0.16 7.69 2.29 45.34 0.10 7.79 16 17 H 0.04 2.34 5.89 -7.37 -0.04 2.29 16 18 C -0.11 -4.52 4.90 31.78 0.16 -4.36 16 19 C -0.14 -6.31 7.08 31.98 0.23 -6.08 16 20 C 0.19 10.12 5.41 86.84 0.47 10.59 16 21 N -0.61 -34.06 2.60 -668.00 -1.74 -35.80 16 22 C -0.23 -13.72 9.79 84.03 0.82 -12.90 16 23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 25 N -0.95 -58.84 10.57 21.65 0.23 -58.61 16 26 Si 0.97 47.92 29.55 68.60 2.03 49.95 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 29 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.46 7.68 -2.39 -0.02 1.44 16 38 H 0.11 1.40 7.95 -2.39 -0.02 1.38 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.14 5.93 -2.39 -0.01 1.12 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.83 7.87 -2.39 -0.02 1.81 16 46 H 0.06 2.20 5.72 -2.39 -0.01 2.18 16 47 H 0.06 2.53 5.46 -2.39 -0.01 2.51 16 48 H 0.09 3.69 5.56 -6.39 -0.04 3.65 16 49 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 51 H 0.03 1.71 6.93 -2.38 -0.02 1.69 16 52 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 53 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -82.73 398.62 2.93 -79.80 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.82 Total: 16.66 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.54 Total: 13.57 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.84 Total: -114.38 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.62 Total: -45.60 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -82.73 2.93 -79.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713269535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.200 kcal (2) G-P(sol) polarization free energy of solvation -82.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds