Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00005 * 2 1 4 4 H 1.07999 * 119.99757 * 202.07139 * 3 2 1 5 5 C 1.38809 * 119.99738 * 22.06604 * 3 2 1 6 6 N 1.31620 * 120.00400 * 12.40501 * 5 3 2 7 7 Si 1.86802 * 119.99719 * 192.40334 * 5 3 2 8 8 H 1.48497 * 109.46901 * 90.00356 * 7 5 3 9 9 H 1.48498 * 109.47026 * 209.99981 * 7 5 3 10 10 H 1.48493 * 109.47210 * 330.00240 * 7 5 3 11 11 C 1.46504 * 120.00073 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.52109 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49576 * 60.00481 * 11 2 1 14 14 C 1.53033 * 109.53729 * 178.68379 * 13 11 2 15 15 C 1.53188 * 109.31858 * 61.36123 * 14 13 11 16 16 N 1.46930 * 108.77546 * 305.36793 * 15 14 13 17 17 C 1.34768 * 120.62949 * 233.60633 * 16 15 14 18 18 O 1.21290 * 120.00216 * 179.97438 * 17 16 15 19 19 C 1.50705 * 120.00236 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.47223 * 179.97438 * 19 17 16 21 21 O 1.42901 * 109.47318 * 179.97438 * 20 19 17 22 22 C 1.42896 * 114.00402 * 179.97438 * 21 20 19 23 23 C 1.53178 * 109.54251 * 269.82577 * 22 21 20 24 24 C 1.53105 * 109.15553 * 183.23910 * 23 22 21 25 25 O 1.42900 * 109.48843 * 57.47359 * 24 23 22 26 26 C 1.42905 * 114.09625 * 298.89083 * 25 24 23 27 27 C 1.53088 * 109.41904 * 61.15548 * 26 25 24 28 28 C 1.46922 * 118.73898 * 53.60363 * 16 15 14 29 29 H 1.09001 * 109.46723 * 274.30758 * 1 2 3 30 30 H 1.09000 * 109.47342 * 34.30722 * 1 2 3 31 31 H 1.09002 * 109.47095 * 154.31171 * 1 2 3 32 32 H 0.96997 * 120.00263 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45432 * 298.69915 * 13 11 2 34 34 H 1.08994 * 109.46321 * 58.67245 * 13 11 2 35 35 H 1.09003 * 109.49629 * 181.31636 * 14 13 11 36 36 H 1.09001 * 109.49491 * 301.37521 * 14 13 11 37 37 H 1.09009 * 109.58598 * 65.15038 * 15 14 13 38 38 H 1.08998 * 109.59278 * 185.43623 * 15 14 13 39 39 H 1.09003 * 109.46818 * 299.99519 * 19 17 16 40 40 H 1.08994 * 109.46983 * 59.99963 * 19 17 16 41 41 H 1.09004 * 109.47365 * 300.00073 * 20 19 17 42 42 H 1.09003 * 109.46843 * 59.99563 * 20 19 17 43 43 H 1.09007 * 109.54155 * 30.00018 * 22 21 20 44 44 H 1.08995 * 109.52298 * 303.05264 * 23 22 21 45 45 H 1.09001 * 109.52269 * 63.25099 * 23 22 21 46 46 H 1.09001 * 109.40386 * 297.49496 * 24 23 22 47 47 H 1.09001 * 109.49243 * 177.50971 * 24 23 22 48 48 H 1.08996 * 109.48129 * 301.17100 * 26 25 24 49 49 H 1.09010 * 109.48863 * 181.14459 * 26 25 24 50 50 H 1.08997 * 109.52933 * 182.48210 * 27 26 25 51 51 H 1.09007 * 109.57174 * 62.32768 * 27 26 25 52 52 H 1.09001 * 109.59116 * 186.60626 * 28 16 15 53 53 H 1.08998 * 109.59005 * 66.18226 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4516 6 7 0.3898 2.2701 1.1018 7 14 2.3213 4.0075 0.1367 8 1 1.8346 4.5492 -1.1575 9 1 1.9594 4.9425 1.2321 10 1 3.7973 3.8531 0.0850 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3832 -1.2656 15 6 2.2497 -4.2123 -0.0311 16 7 2.4654 -3.3937 1.1698 17 6 3.2361 -3.8449 2.1790 18 8 3.4069 -3.1595 3.1650 19 6 3.8860 -5.2012 2.0826 20 6 4.6999 -5.4681 3.3504 21 8 5.3157 -6.7544 3.2593 22 6 6.1043 -7.1034 4.3987 23 6 7.5468 -6.6339 4.1867 24 6 8.4011 -7.0830 5.3752 25 8 8.3227 -8.5035 5.5089 26 6 7.0037 -8.9943 5.7570 27 6 6.0937 -8.6240 4.5829 28 6 1.8248 -2.0739 1.2494 29 1 -0.3633 0.0772 1.0248 30 1 -0.3634 0.8489 -0.5792 31 1 -0.3633 -0.9261 -0.4455 32 1 -0.0417 3.0793 1.4177 33 1 0.7606 -2.2914 -1.2368 34 1 2.0700 -1.4914 -2.1386 35 1 2.3716 -3.9443 -2.1672 36 1 3.6855 -3.1651 -1.2529 37 1 1.2021 -4.5080 -0.0884 38 1 2.8785 -5.1016 0.0126 39 1 3.1166 -5.9660 1.9768 40 1 4.5459 -5.2271 1.2155 41 1 5.4694 -4.7032 3.4560 42 1 4.0403 -5.4420 4.2178 43 1 5.6922 -6.6256 5.2876 44 1 7.9414 -7.0720 3.2699 45 1 7.5686 -5.5467 4.1109 46 1 8.0315 -6.6112 6.2856 47 1 9.4379 -6.7902 5.2092 48 1 6.6158 -8.5476 6.6724 49 1 7.0335 -10.0785 5.8659 50 1 5.0773 -8.9588 4.7900 51 1 6.4570 -9.1036 3.6739 52 1 2.1750 -1.5508 2.1393 53 1 0.7427 -2.1951 1.2965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713399762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -133.083624 kcal Electronic energy + Delta-G solvation = -30412.140921 eV Core-core repulsion = 26283.407723 eV Total energy + Delta-G solvation = -4128.733198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33289 -40.56845 -39.08349 -38.37702 -36.78745 -34.24912 -33.83425 -32.82401 -32.14117 -32.08895 -30.28479 -28.07507 -26.76868 -25.60878 -25.20778 -24.65465 -23.89830 -23.05259 -21.46275 -20.92152 -19.81011 -18.84556 -18.55722 -17.70335 -17.29887 -17.05631 -16.95222 -16.75503 -16.70372 -16.00646 -15.80474 -15.68898 -15.38084 -15.23290 -15.04656 -14.71820 -14.54125 -14.41256 -14.17208 -13.93271 -13.85203 -13.47305 -13.35751 -13.00432 -12.96603 -12.84342 -12.66868 -12.48145 -12.33597 -12.22987 -12.16023 -12.09084 -12.06013 -11.81887 -11.74763 -11.62901 -11.39409 -11.36805 -10.88833 -10.68844 -10.66753 -10.52058 -9.70434 -8.79170 -7.86018 -5.34286 1.43163 1.43991 1.53098 1.57289 1.82788 2.47095 2.60661 2.93716 3.27160 3.57629 3.60716 3.72314 3.72811 3.93714 3.96098 3.99925 4.03259 4.07913 4.12289 4.16412 4.24954 4.27719 4.35040 4.37879 4.47070 4.54390 4.64115 4.67396 4.71676 4.74017 4.76371 4.77781 4.80695 4.84645 4.90842 4.95146 5.03281 5.05578 5.10702 5.17000 5.18655 5.25894 5.42430 5.49066 5.55997 5.60836 5.70276 6.13852 6.20226 6.29719 6.44545 7.11264 7.14111 7.84053 8.26137 9.16682 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002036 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.583453 B =13746.224082 C =14641.692686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.166 3.834 12 H 0.044 0.956 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.101 3.899 16 N -0.604 5.604 17 C 0.507 3.493 18 O -0.597 6.597 19 C -0.122 4.122 20 C 0.081 3.919 21 O -0.385 6.385 22 C 0.082 3.918 23 C -0.177 4.177 24 C 0.062 3.938 25 O -0.401 6.401 26 C 0.060 3.940 27 C -0.147 4.147 28 C 0.114 3.886 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.116 0.884 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.043 0.957 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -26.324 1.867 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.058 3.942 12 H 0.062 0.938 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.020 4.020 16 N -0.337 5.337 17 C 0.297 3.703 18 O -0.479 6.479 19 C -0.162 4.162 20 C 0.004 3.996 21 O -0.305 6.305 22 C 0.024 3.976 23 C -0.215 4.215 24 C -0.014 4.014 25 O -0.320 6.320 26 C -0.016 4.016 27 C -0.185 4.185 28 C -0.011 4.011 29 H 0.016 0.984 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.126 0.874 48 H 0.079 0.921 49 H 0.134 0.866 50 H 0.109 0.891 51 H 0.094 0.906 52 H 0.061 0.939 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.197 -26.073 2.247 28.087 hybrid contribution -0.251 2.220 0.435 2.276 sum 9.947 -23.853 2.683 25.983 Atomic orbital electron populations 1.20485 0.82500 0.96196 0.97238 1.44181 1.02217 1.01036 1.85783 1.19534 0.97934 0.86589 1.35351 0.91536 1.25813 0.98614 1.01933 0.98612 1.70238 1.19707 1.27461 1.41038 0.85220 0.78254 0.79711 0.76989 1.20821 1.22196 1.19627 1.20797 0.94823 0.85245 0.93294 0.93808 1.21935 1.00623 0.96462 0.97285 1.21891 1.00173 0.95227 0.98857 1.22154 1.03597 0.93936 0.82336 1.48324 1.48319 1.17905 1.19139 1.21161 0.78236 0.88991 0.81889 1.90704 1.63343 1.60549 1.33269 1.21442 1.01365 0.92985 1.00387 1.22053 0.95523 0.84679 0.97311 1.87819 1.66220 1.34395 1.42023 1.22262 0.90389 0.96482 0.88440 1.22708 0.96013 1.02062 1.00735 1.22641 1.01404 0.80882 0.96510 1.87919 1.29305 1.22174 1.92611 1.22747 0.81727 1.01181 0.95961 1.22272 1.02060 0.93523 1.00659 1.21961 0.96473 0.82970 0.99711 0.98408 0.96389 0.94572 0.94246 0.91799 0.92596 0.87323 0.91867 0.89672 0.86108 0.85358 0.85786 0.93810 0.93387 0.91863 0.90691 0.90781 0.92277 0.87424 0.92081 0.86572 0.89125 0.90608 0.93852 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 7.91 127.77 1.01 9.97 16 2 N -0.61 -30.98 2.82 -702.33 -1.98 -32.96 16 3 C -0.26 -14.94 9.60 84.03 0.81 -14.13 16 4 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 5 C -0.05 -3.16 5.11 84.86 0.43 -2.72 16 6 N -0.94 -56.98 10.63 21.65 0.23 -56.75 16 7 Si 0.97 46.44 29.57 68.60 2.03 48.47 16 8 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 C 0.17 6.78 2.74 45.07 0.12 6.90 16 12 H 0.04 1.93 7.86 -2.38 -0.02 1.91 16 13 C -0.12 -3.74 5.13 30.62 0.16 -3.59 16 14 C -0.12 -2.46 6.08 30.67 0.19 -2.27 16 15 C 0.10 1.84 6.34 86.36 0.55 2.39 16 16 N -0.60 -17.60 2.97 -818.90 -2.43 -20.03 16 17 C 0.51 15.29 7.70 87.66 0.67 15.96 16 18 O -0.60 -24.37 15.40 -3.06 -0.05 -24.41 16 19 C -0.12 -2.35 4.42 29.85 0.13 -2.22 16 20 C 0.08 1.77 5.04 71.98 0.36 2.13 16 21 O -0.39 -7.56 10.00 -148.98 -1.49 -9.05 16 22 C 0.08 1.36 2.69 30.71 0.08 1.44 16 23 C -0.18 -2.81 5.77 30.69 0.18 -2.63 16 24 C 0.06 0.86 6.84 72.02 0.49 1.36 16 25 O -0.40 -6.58 10.77 -148.98 -1.60 -8.18 16 26 C 0.06 0.70 6.84 72.01 0.49 1.19 16 27 C -0.15 -1.93 5.79 30.68 0.18 -1.75 16 28 C 0.11 4.48 5.79 86.36 0.50 4.98 16 29 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 30 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 31 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.06 1.88 6.71 -2.39 -0.02 1.87 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.34 16 38 H 0.12 1.32 5.95 -2.39 -0.01 1.31 16 39 H 0.13 1.79 7.94 -2.39 -0.02 1.77 16 40 H 0.12 1.86 7.69 -2.39 -0.02 1.84 16 41 H 0.04 1.07 7.93 -2.38 -0.02 1.05 16 42 H 0.05 1.13 8.04 -2.39 -0.02 1.11 16 43 H 0.06 1.04 7.79 -2.38 -0.02 1.02 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.21 7.97 -2.39 -0.02 1.19 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 52 H 0.04 2.11 7.01 -2.39 -0.02 2.09 16 53 H 0.06 2.30 7.51 -2.39 -0.02 2.29 16 Total: -1.00 -75.66 406.43 1.93 -73.73 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.87 Total: 12.16 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.36 Total: 17.02 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.18 Total: -109.73 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -3.14 Total: -41.64 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.66 1.93 -73.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713399762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.357 kcal (2) G-P(sol) polarization free energy of solvation -75.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds