Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47063 * 2 1 4 4 C 1.42901 * 113.99895 * 185.24219 * 3 2 1 5 5 H 1.08992 * 109.47186 * 359.82682 * 4 3 2 6 6 C 1.50698 * 109.47025 * 239.82233 * 4 3 2 7 7 O 1.21278 * 120.00135 * 355.00389 * 6 4 3 8 8 N 1.34784 * 119.99633 * 174.99965 * 6 4 3 9 9 C 1.46497 * 119.99533 * 180.02562 * 8 6 4 10 10 H 1.08999 * 109.47279 * 325.00192 * 9 8 6 11 11 C 1.53002 * 109.47336 * 85.00205 * 9 8 6 12 12 C 1.52995 * 109.47426 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46990 * 299.99903 * 12 11 9 14 14 H 1.08999 * 109.47417 * 299.99944 * 13 12 11 15 15 N 1.46505 * 109.47223 * 179.97438 * 13 12 11 16 16 C 1.36931 * 120.00182 * 85.00148 * 15 13 12 17 17 H 1.08007 * 119.99902 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00195 * 180.02562 * 16 15 13 19 19 N 1.31613 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47212 * 59.99961 * 20 18 16 22 22 H 1.48506 * 109.46963 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47391 * 299.99700 * 20 18 16 24 24 C 1.53002 * 109.47186 * 60.00123 * 13 12 11 25 25 C 1.53002 * 109.46797 * 204.99934 * 9 8 6 26 26 C 1.53003 * 109.47052 * 119.82492 * 4 3 2 27 27 H 1.08996 * 110.45790 * 179.43294 * 26 4 3 28 28 C 1.54510 * 110.51026 * 302.03924 * 26 4 3 29 29 C 1.54476 * 104.06363 * 118.64172 * 28 26 4 30 30 O 1.44424 * 104.80333 * 23.98227 * 29 28 26 31 31 C 1.44644 * 105.36801 * 319.55881 * 30 29 28 32 32 H 1.08997 * 109.46974 * 60.00373 * 1 2 3 33 33 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47444 * 300.00301 * 1 2 3 35 35 H 1.09000 * 109.47444 * 239.99699 * 2 1 3 36 36 H 1.09007 * 109.46808 * 119.99696 * 2 1 3 37 37 H 0.96997 * 120.00272 * 0.02562 * 8 6 4 38 38 H 1.08995 * 109.47006 * 300.00007 * 11 9 8 39 39 H 1.08999 * 109.46948 * 59.99784 * 11 9 8 40 40 H 1.09003 * 109.47444 * 59.99900 * 12 11 9 41 41 H 1.09003 * 109.47469 * 180.02562 * 12 11 9 42 42 H 0.97002 * 119.99799 * 265.00305 * 15 13 12 43 43 H 0.96998 * 120.00051 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.47235 * 179.97438 * 24 13 12 45 45 H 1.08999 * 109.47089 * 59.99619 * 24 13 12 46 46 H 1.09002 * 109.47214 * 60.00380 * 25 9 8 47 47 H 1.08999 * 109.47417 * 300.00173 * 25 9 8 48 48 H 1.08997 * 110.51062 * 237.29026 * 28 26 4 49 49 H 1.09002 * 110.51603 * 359.85744 * 28 26 4 50 50 H 1.09001 * 110.36879 * 142.80775 * 29 28 26 51 51 H 1.08997 * 110.37804 * 265.03348 * 29 28 26 52 52 H 1.08996 * 110.34284 * 281.60209 * 31 30 29 53 53 H 1.08991 * 110.51130 * 159.18698 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4257 1.4619 -0.1193 5 1 3.8663 0.4672 -0.1847 6 6 3.9752 2.1764 1.0884 7 8 3.2188 2.6304 1.9207 8 7 5.3073 2.3107 1.2437 9 6 5.8415 3.0048 2.4181 10 1 5.1732 3.8209 2.6930 11 6 5.9525 2.0215 3.5850 12 6 6.5109 2.7462 4.8113 13 6 7.8959 3.3083 4.4846 14 1 8.5638 2.4920 4.2095 15 7 8.4305 4.0028 5.6586 16 6 9.0902 3.2979 6.6296 17 1 9.2161 2.2298 6.5302 18 6 9.5962 3.9559 7.7423 19 7 9.4423 5.2573 7.8636 20 14 10.4955 2.9940 9.0672 21 1 11.6822 2.3262 8.4748 22 1 10.9345 3.9217 10.1405 23 1 9.5853 1.9697 9.6394 24 6 7.7850 4.2917 3.3177 25 6 7.2264 3.5674 2.0917 26 6 3.7690 2.2558 -1.3814 27 1 4.8490 2.3616 -1.4829 28 6 3.1723 1.5704 -2.6310 29 6 2.2002 2.6230 -3.2083 30 8 2.6942 3.8889 -2.7193 31 6 3.0897 3.6429 -1.3499 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 5.9122 1.9479 0.5780 38 1 4.9659 1.6207 3.8174 39 1 6.6207 1.2054 3.3101 40 1 5.8431 3.5626 5.0864 41 1 6.5904 2.0456 5.6425 42 1 8.3170 4.9620 5.7480 43 1 9.7962 5.7171 8.6409 44 1 8.7715 4.6925 3.0852 45 1 7.1171 5.1080 3.5927 46 1 7.1473 4.2680 1.2604 47 1 7.8946 2.7513 1.8168 48 1 3.9571 1.3395 -3.3514 49 1 2.6349 0.6647 -2.3500 50 1 2.2222 2.6025 -4.2979 51 1 1.1878 2.4434 -2.8466 52 1 2.2145 3.6221 -0.7006 53 1 3.7947 4.4030 -1.0136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714305198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -157.624740 kcal Electronic energy + Delta-G solvation = -30930.301823 eV Core-core repulsion = 26800.504443 eV Total energy + Delta-G solvation = -4129.797380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63694 -40.30575 -39.27479 -38.38342 -36.34674 -34.82136 -34.01144 -32.40354 -31.94968 -31.69360 -30.42431 -29.10824 -27.24094 -25.47257 -24.23550 -23.71371 -23.49318 -22.55076 -21.85517 -21.26309 -20.80476 -19.18277 -18.55570 -18.06854 -17.30337 -17.18280 -16.96655 -16.76083 -16.18106 -15.96819 -15.91116 -15.54970 -15.35742 -15.32806 -15.03312 -14.75515 -14.42217 -14.18804 -14.01154 -13.58287 -13.42347 -13.21800 -13.14179 -13.08996 -12.97691 -12.79675 -12.70489 -12.42958 -12.32751 -12.29884 -12.19400 -12.17892 -12.03340 -11.94138 -11.66396 -11.63725 -11.45639 -11.20863 -11.14481 -10.83815 -10.73950 -10.28914 -10.03447 -8.99441 -7.93084 -5.21324 1.46344 1.49517 1.55431 1.55602 1.90408 2.56700 2.76912 3.00609 3.39482 3.39768 3.65355 3.75517 3.79732 3.85078 3.91013 3.91788 4.03083 4.17060 4.20764 4.29345 4.37010 4.37474 4.40047 4.41111 4.46110 4.46515 4.53661 4.59991 4.65520 4.74187 4.80356 4.85795 4.87513 4.91369 5.00765 5.02449 5.08557 5.12134 5.13691 5.14519 5.25625 5.26313 5.27826 5.47160 5.53590 5.55248 5.64015 5.82089 6.08467 6.29476 6.60532 7.27837 7.34708 8.12837 8.34866 9.30483 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002116 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.002350 B =13228.323925 C =13995.891863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.377 6.377 4 C 0.086 3.914 5 H 0.128 0.872 6 C 0.496 3.504 7 O -0.572 6.572 8 N -0.705 5.705 9 C 0.153 3.847 10 H 0.059 0.941 11 C -0.111 4.111 12 C -0.124 4.124 13 C 0.173 3.827 14 H 0.050 0.950 15 N -0.740 5.740 16 C -0.236 4.236 17 H 0.076 0.924 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.281 1.281 24 C -0.114 4.114 25 C -0.104 4.104 26 C -0.120 4.120 27 H 0.124 0.876 28 C -0.137 4.137 29 C 0.039 3.961 30 O -0.400 6.400 31 C 0.050 3.950 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.418 0.582 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.106 0.894 51 H 0.054 0.946 52 H 0.048 0.952 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 -14.035 -28.283 34.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.295 6.295 4 C 0.025 3.975 5 H 0.145 0.855 6 C 0.282 3.718 7 O -0.450 6.450 8 N -0.359 5.359 9 C 0.048 3.952 10 H 0.077 0.923 11 C -0.150 4.150 12 C -0.165 4.165 13 C 0.065 3.935 14 H 0.068 0.932 15 N -0.379 5.379 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.801 3.199 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.207 1.207 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.139 4.139 27 H 0.142 0.858 28 C -0.174 4.174 29 C -0.038 4.038 30 O -0.319 6.319 31 C -0.027 4.027 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.120 0.880 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.073 0.927 52 H 0.066 0.934 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.875 -13.507 -27.716 33.810 hybrid contribution 0.516 -0.073 1.607 1.689 sum -13.359 -13.580 -26.109 32.320 Atomic orbital electron populations 1.21750 0.93241 1.03356 1.02396 1.22903 0.96369 0.82494 1.01201 1.88040 1.19143 1.28231 1.94092 1.21992 0.83740 1.00801 0.90995 0.85492 1.21502 0.82614 0.79886 0.87804 1.90734 1.58967 1.49465 1.45794 1.45915 1.06363 1.58368 1.25261 1.20813 0.95467 0.93976 0.84907 0.92262 1.21748 1.00160 0.98549 0.94537 1.22036 0.98390 0.98942 0.97084 1.20493 0.92176 0.94256 0.86564 0.93182 1.42689 1.66424 1.07227 1.21588 1.19592 1.26171 0.92314 0.98763 0.90640 1.25569 1.03671 0.96679 1.01295 1.69814 1.52956 1.08568 1.30931 0.85238 0.78694 0.77260 0.78755 1.20080 1.22371 1.20695 1.21640 1.01084 0.97991 0.94612 1.21641 0.93984 1.01145 0.97480 1.22918 1.02932 0.94561 0.93497 0.85831 1.22946 0.99758 0.98915 0.95804 1.23570 0.97263 0.82404 1.00522 1.89123 1.83427 1.32808 1.26563 1.23394 0.98593 0.96804 0.83864 0.91711 0.88899 0.93690 0.90164 0.93582 0.74423 0.93713 0.90169 0.94644 0.94170 0.79796 0.94152 0.91374 0.93212 0.89252 0.88993 0.88025 0.89110 0.87576 0.92722 0.93402 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.57 6.07 71.98 0.44 1.01 16 3 O -0.38 -7.08 8.07 -129.99 -1.05 -8.13 16 4 C 0.09 1.23 2.29 29.85 0.07 1.30 16 5 H 0.13 0.91 7.60 -2.39 -0.02 0.89 16 6 C 0.50 10.95 6.58 87.66 0.58 11.53 16 7 O -0.57 -19.41 16.17 15.97 0.26 -19.16 16 8 N -0.71 -12.11 5.04 -442.53 -2.23 -14.34 16 9 C 0.15 3.67 2.46 44.99 0.11 3.79 16 10 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 11 C -0.11 -3.11 5.49 30.59 0.17 -2.94 16 12 C -0.12 -4.57 5.50 30.59 0.17 -4.40 16 13 C 0.17 6.66 2.77 44.99 0.12 6.78 16 14 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 15 N -0.74 -37.69 5.12 -322.92 -1.65 -39.34 16 16 C -0.24 -13.22 9.93 84.03 0.83 -12.38 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -60.54 13.06 21.65 0.28 -60.25 16 20 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 C -0.11 -3.50 5.39 30.58 0.16 -3.33 16 25 C -0.10 -2.16 5.39 30.58 0.16 -1.99 16 26 C -0.12 -1.37 3.00 -9.77 -0.03 -1.40 16 27 H 0.12 0.81 7.97 -2.39 -0.02 0.79 16 28 C -0.14 -1.07 6.48 31.61 0.20 -0.87 16 29 C 0.04 0.50 7.64 72.48 0.55 1.05 16 30 O -0.40 -8.21 11.65 -148.98 -1.74 -9.95 16 31 C 0.05 0.97 6.55 72.49 0.47 1.45 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.49 6.90 -2.39 -0.02 0.47 16 36 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.42 3.65 8.44 -92.71 -0.78 2.87 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.09 0.51 5.96 -2.39 -0.01 0.50 16 50 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.05 1.19 7.15 -2.39 -0.02 1.17 16 53 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -78.84 415.18 0.52 -78.32 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.61 Total: 29.85 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.23 Total: -5.68 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.60 Total: -113.94 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -2.53 Total: -37.23 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.84 0.52 -78.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714305198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.305 kcal (2) G-P(sol) polarization free energy of solvation -78.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds