Wall clock time and date at job start Sat Apr 11 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 120.00065 * 2 1 4 4 H 1.07995 * 120.00007 * 203.49167 * 3 2 1 5 5 C 1.38814 * 120.00034 * 23.48658 * 3 2 1 6 6 N 1.31621 * 119.99737 * 11.50697 * 5 3 2 7 7 Si 1.86800 * 119.99695 * 191.50928 * 5 3 2 8 8 H 1.48492 * 109.47546 * 60.00102 * 7 5 3 9 9 H 1.48504 * 109.46881 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47180 * 299.99416 * 7 5 3 11 11 C 1.46495 * 120.00083 * 179.97438 * 2 1 3 12 12 H 1.08993 * 109.50304 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.52943 * 300.14999 * 11 2 1 14 14 C 1.53040 * 109.54156 * 181.33015 * 13 11 2 15 15 C 1.53626 * 109.24059 * 298.50933 * 14 13 11 16 16 N 1.46926 * 108.54216 * 54.85623 * 15 14 13 17 17 C 1.34778 * 120.63134 * 126.36912 * 16 15 14 18 18 O 1.21280 * 120.00057 * 179.71885 * 17 16 15 19 19 C 1.50698 * 119.99821 * 359.72100 * 17 16 15 20 20 C 1.53002 * 109.46989 * 180.02562 * 19 17 16 21 21 O 1.42897 * 109.46993 * 179.97438 * 20 19 17 22 22 C 1.42903 * 114.00203 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47319 * 179.97438 * 22 21 20 24 24 H 1.08994 * 110.41749 * 304.14262 * 23 22 21 25 25 C 1.54475 * 110.37031 * 181.83320 * 23 22 21 26 26 C 1.54514 * 104.06295 * 217.18981 * 25 23 22 27 27 C 1.54482 * 104.06190 * 359.97438 * 26 25 23 28 28 O 1.44424 * 110.37099 * 66.45094 * 23 22 21 29 29 C 1.46923 * 118.73727 * 306.09084 * 16 15 14 30 30 H 1.09011 * 109.47178 * 274.30398 * 1 2 3 31 31 H 1.09001 * 109.47272 * 34.30077 * 1 2 3 32 32 H 1.08999 * 109.47529 * 154.30497 * 1 2 3 33 33 H 0.97000 * 119.99645 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.46120 * 301.35182 * 13 11 2 35 35 H 1.09006 * 109.45931 * 61.30548 * 13 11 2 36 36 H 1.08997 * 109.49759 * 58.58126 * 14 13 11 37 37 H 1.09004 * 109.49784 * 178.65462 * 14 13 11 38 38 H 1.08998 * 109.74004 * 295.11885 * 15 14 13 39 39 H 1.08992 * 109.66711 * 174.54609 * 15 14 13 40 40 H 1.08997 * 109.47432 * 59.99715 * 19 17 16 41 41 H 1.08999 * 109.46893 * 300.00055 * 19 17 16 42 42 H 1.08998 * 109.47115 * 59.99924 * 20 19 17 43 43 H 1.09003 * 109.46846 * 299.99257 * 20 19 17 44 44 H 1.08997 * 109.46830 * 59.99403 * 22 21 20 45 45 H 1.09004 * 109.46741 * 299.99977 * 22 21 20 46 46 H 1.09003 * 110.51390 * 335.83280 * 25 23 22 47 47 H 1.08998 * 110.51346 * 98.54176 * 25 23 22 48 48 H 1.08996 * 110.51462 * 118.64285 * 26 25 23 49 49 H 1.08998 * 110.51118 * 241.21759 * 26 25 23 50 50 H 1.08997 * 110.37476 * 265.14924 * 27 26 25 51 51 H 1.08994 * 110.37006 * 142.80960 * 27 26 25 52 52 H 1.09011 * 109.58597 * 173.64943 * 29 16 15 53 53 H 1.09000 * 109.59095 * 294.07323 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2247 -0.3728 5 6 1.5419 2.3383 0.4791 6 7 0.4050 2.2577 1.1374 7 14 2.3376 4.0034 0.1895 8 1 2.4636 4.2447 -1.2703 9 1 1.4959 5.0662 0.7955 10 1 3.6853 4.0230 0.8127 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8259 -2.0734 1.2481 14 6 2.6158 -3.3841 1.2659 15 6 2.2463 -4.2147 0.0275 16 7 2.4688 -3.3927 -1.1698 17 6 3.2416 -3.8429 -2.1780 18 8 3.4134 -3.1570 -3.1633 19 6 3.8921 -5.1988 -2.0811 20 6 4.7083 -5.4646 -3.3476 21 8 5.3257 -6.7500 -3.2554 22 6 6.1166 -7.0980 -4.3936 23 6 6.7261 -8.4860 -4.1861 24 1 7.2993 -8.5149 -3.2595 25 6 7.6232 -8.8641 -5.3855 26 6 7.3784 -10.3779 -5.5749 27 6 6.3629 -10.7354 -4.4671 28 8 5.6904 -9.4923 -4.1682 29 6 1.8278 -2.0731 -1.2497 30 1 -0.3634 0.0771 1.0249 31 1 -0.3634 0.8489 -0.5791 32 1 -0.3634 -0.9260 -0.4456 33 1 -0.0199 3.0630 1.4718 34 1 2.0652 -1.4931 2.1392 35 1 0.7583 -2.2929 1.2340 36 1 3.6836 -3.1655 1.2550 37 1 2.3685 -3.9457 2.1668 38 1 1.1977 -4.5075 0.0801 39 1 2.8744 -5.1043 -0.0182 40 1 3.1232 -5.9642 -1.9766 41 1 4.5506 -5.2245 -1.2128 42 1 5.4774 -4.6992 -3.4515 43 1 4.0501 -5.4388 -4.2161 44 1 6.9145 -6.3661 -4.5191 45 1 5.4879 -7.1063 -5.2840 46 1 7.3212 -8.3139 -6.2768 47 1 8.6710 -8.6726 -5.1541 48 1 6.9554 -10.5761 -6.5597 49 1 8.3057 -10.9346 -5.4395 50 1 6.8807 -11.1093 -3.5839 51 1 5.6491 -11.4745 -4.8308 52 1 2.1797 -1.5491 -2.1386 53 1 0.7457 -2.1947 -1.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714439913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:33 Heat of formation + Delta-G solvation = -128.771654 kcal Electronic energy + Delta-G solvation = -29981.566098 eV Core-core repulsion = 25853.019881 eV Total energy + Delta-G solvation = -4128.546217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31217 -40.45278 -39.12657 -38.44639 -36.76898 -34.09341 -33.27040 -32.90190 -32.82692 -31.23385 -30.19924 -28.06493 -26.84337 -26.08638 -25.39670 -24.04980 -23.03747 -22.90647 -21.91645 -20.95397 -19.81797 -18.82159 -18.50242 -17.77992 -17.46201 -17.04807 -17.01454 -16.65218 -16.48889 -16.45979 -15.84566 -15.67978 -15.32032 -15.17262 -14.80840 -14.63307 -14.52483 -14.43735 -14.23461 -13.74246 -13.64626 -13.59306 -13.13715 -12.86388 -12.80515 -12.67135 -12.53366 -12.46964 -12.30737 -12.26888 -12.18587 -12.07989 -12.07452 -11.93022 -11.78765 -11.66744 -11.48699 -11.38477 -10.88799 -10.72709 -10.66382 -10.64805 -9.71227 -8.75704 -7.84633 -5.34035 1.43271 1.46176 1.52496 1.57779 1.83584 2.48217 2.63946 2.95105 3.28065 3.57984 3.61638 3.67132 3.81428 3.96238 4.00110 4.02140 4.05337 4.11308 4.15829 4.17477 4.24415 4.35341 4.37833 4.41524 4.48740 4.51375 4.56294 4.64232 4.72260 4.76297 4.79494 4.81557 4.84432 4.89786 4.91216 4.93000 4.97012 5.04270 5.09973 5.15895 5.17215 5.27786 5.44061 5.49824 5.51544 5.62959 5.71554 5.90816 6.14578 6.31346 6.44004 7.11685 7.14542 7.84771 8.27635 9.17508 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.001797 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.844616 B =15577.285921 C =16250.797052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.268 4.268 4 H 0.061 0.939 5 C -0.048 4.048 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.168 3.832 12 H 0.044 0.956 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.604 5.604 17 C 0.512 3.488 18 O -0.593 6.593 19 C -0.124 4.124 20 C 0.082 3.918 21 O -0.394 6.394 22 C 0.063 3.937 23 C 0.073 3.927 24 H 0.078 0.922 25 C -0.147 4.147 26 C -0.151 4.151 27 C 0.033 3.967 28 O -0.396 6.396 29 C 0.112 3.888 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.030 0.970 33 H 0.249 0.751 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.098 0.902 52 H 0.056 0.944 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.800 -28.787 -8.020 32.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.398 4.398 4 H 0.079 0.921 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.201 1.201 11 C 0.060 3.940 12 H 0.062 0.938 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.018 4.018 16 N -0.337 5.337 17 C 0.302 3.698 18 O -0.474 6.474 19 C -0.164 4.164 20 C 0.005 3.995 21 O -0.314 6.314 22 C -0.014 4.014 23 C 0.016 3.984 24 H 0.096 0.904 25 C -0.185 4.185 26 C -0.189 4.189 27 C -0.043 4.043 28 O -0.315 6.315 29 C -0.013 4.013 30 H 0.027 0.973 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.086 0.914 51 H 0.116 0.884 52 H 0.075 0.925 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.524 -28.379 -8.253 32.098 hybrid contribution 0.141 1.828 -0.285 1.856 sum 12.665 -26.551 -8.538 30.630 Atomic orbital electron populations 1.20489 0.82582 0.95677 0.97650 1.44073 1.02123 1.00994 1.86077 1.19439 0.98579 0.87118 1.34655 0.92092 1.25740 0.98546 1.01653 0.98378 1.70204 1.19899 1.27760 1.40160 0.85352 0.77812 0.79674 0.77659 1.20873 1.21573 1.20142 1.20708 0.94793 0.85307 0.93192 0.93755 1.21940 1.00243 0.96403 0.97679 1.21967 1.00120 0.95173 0.98877 1.22210 1.03507 0.93781 0.82299 1.48249 1.48303 1.17829 1.19291 1.21044 0.78118 0.88843 0.81831 1.90686 1.63325 1.60377 1.33051 1.21436 1.01354 0.93108 1.00488 1.22025 0.95848 0.84398 0.97256 1.87812 1.66805 1.34912 1.41868 1.22744 0.94830 0.95164 0.88615 1.23126 0.88623 0.87254 0.99417 0.90383 1.22952 1.00861 0.96840 0.97813 1.22947 1.00526 0.95486 0.99927 1.23627 0.95811 0.87113 0.97761 1.89211 1.32146 1.17864 1.92321 1.21918 0.96954 0.83044 0.99372 0.97336 0.96916 0.95199 0.94167 0.94027 0.92365 0.91818 0.87908 0.89648 0.86152 0.85823 0.85789 0.93138 0.93546 0.90246 0.92778 0.90145 0.88353 0.90230 0.88605 0.91434 0.88390 0.92530 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 8.03 127.77 1.03 10.08 16 2 N -0.61 -31.35 2.81 -702.34 -1.98 -33.33 16 3 C -0.27 -15.30 9.58 84.03 0.81 -14.50 16 4 H 0.06 3.47 7.82 -2.91 -0.02 3.45 16 5 C -0.05 -2.74 5.12 84.86 0.43 -2.31 16 6 N -0.93 -55.88 10.66 21.65 0.23 -55.65 16 7 Si 0.97 46.45 29.57 68.60 2.03 48.47 16 8 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 C 0.17 6.97 2.74 45.07 0.12 7.09 16 12 H 0.04 1.99 7.87 -2.39 -0.02 1.97 16 13 C -0.12 -4.19 5.14 30.62 0.16 -4.03 16 14 C -0.12 -2.78 6.10 30.82 0.19 -2.59 16 15 C 0.10 2.02 6.37 86.51 0.55 2.57 16 16 N -0.60 -17.40 2.97 -818.05 -2.43 -19.82 16 17 C 0.51 15.13 7.70 87.66 0.67 15.81 16 18 O -0.59 -23.12 15.39 -3.03 -0.05 -23.17 16 19 C -0.12 -2.51 4.42 29.85 0.13 -2.37 16 20 C 0.08 1.84 5.23 71.98 0.38 2.22 16 21 O -0.39 -8.64 10.34 -147.82 -1.53 -10.16 16 22 C 0.06 1.09 5.54 71.98 0.40 1.49 16 23 C 0.07 1.11 3.57 31.10 0.11 1.22 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.15 -1.36 6.63 31.61 0.21 -1.15 16 26 C -0.15 -1.19 7.09 31.61 0.22 -0.96 16 27 C 0.03 0.39 7.63 72.49 0.55 0.94 16 28 O -0.40 -7.74 11.34 -147.82 -1.68 -9.42 16 29 C 0.11 4.18 5.78 86.37 0.50 4.68 16 30 H 0.01 0.45 7.38 -2.38 -0.02 0.44 16 31 H 0.01 0.67 7.28 -2.39 -0.02 0.66 16 32 H 0.03 1.27 6.36 -2.39 -0.02 1.26 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.96 7.72 -2.38 -0.02 1.94 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.51 5.93 -2.39 -0.01 1.49 16 40 H 0.12 1.97 7.93 -2.39 -0.02 1.95 16 41 H 0.12 1.98 7.70 -2.39 -0.02 1.96 16 42 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 43 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.08 0.72 7.87 -2.39 -0.02 0.70 16 47 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 2.49 7.01 -2.38 -0.02 2.47 16 53 H 0.07 2.40 6.50 -2.39 -0.02 2.39 16 Total: -1.00 -75.56 410.66 1.94 -73.62 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.87 Total: 11.28 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.47 Total: 18.18 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.17 Total: -108.80 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -3.25 Total: -42.75 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.56 1.94 -73.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714439913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.150 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds