Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99911 * 2 1 4 4 H 1.08000 * 119.99551 * 202.06179 * 3 2 1 5 5 C 1.38804 * 120.00218 * 22.06579 * 3 2 1 6 6 N 1.31619 * 120.00094 * 12.42875 * 5 3 2 7 7 Si 1.86803 * 120.00225 * 192.42654 * 5 3 2 8 8 H 1.48504 * 109.46938 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47001 * 119.99648 * 7 5 3 10 10 H 1.48495 * 109.47199 * 240.00142 * 7 5 3 11 11 C 1.46505 * 119.99886 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.49777 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49675 * 59.99391 * 11 2 1 14 14 C 1.53041 * 109.53487 * 178.65124 * 13 11 2 15 15 C 1.53193 * 109.31472 * 61.36572 * 14 13 11 16 16 N 1.46931 * 108.77697 * 305.36946 * 15 14 13 17 17 C 1.34773 * 120.62686 * 233.58631 * 16 15 14 18 18 O 1.21277 * 119.99996 * 179.97438 * 17 16 15 19 19 C 1.50704 * 120.00106 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.46738 * 180.02562 * 19 17 16 21 21 O 1.42902 * 109.46707 * 180.02562 * 20 19 17 22 22 C 1.42903 * 113.99712 * 180.02562 * 21 20 19 23 23 C 1.53004 * 109.47009 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.87198 * 53.98253 * 23 22 21 25 25 C 1.54092 * 109.87957 * 174.99817 * 23 22 21 26 26 C 1.54814 * 104.19198 * 121.45217 * 25 23 22 27 27 C 1.55003 * 102.08760 * 20.87705 * 26 25 23 28 28 O 1.43750 * 109.87636 * 292.82519 * 23 22 21 29 29 C 1.46922 * 118.73985 * 53.85335 * 16 15 14 30 30 H 1.09000 * 109.46695 * 274.30516 * 1 2 3 31 31 H 1.08993 * 109.47023 * 34.30253 * 1 2 3 32 32 H 1.08999 * 109.47159 * 154.30842 * 1 2 3 33 33 H 0.97002 * 120.00078 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46043 * 58.63903 * 13 11 2 35 35 H 1.08990 * 109.45159 * 298.66630 * 13 11 2 36 36 H 1.09002 * 109.49832 * 301.41723 * 14 13 11 37 37 H 1.09000 * 109.52488 * 181.33692 * 14 13 11 38 38 H 1.09001 * 109.58893 * 185.57445 * 15 14 13 39 39 H 1.09006 * 109.58488 * 65.14887 * 15 14 13 40 40 H 1.08999 * 109.47118 * 60.00681 * 19 17 16 41 41 H 1.09001 * 109.47080 * 300.00136 * 19 17 16 42 42 H 1.08989 * 109.47807 * 60.00276 * 20 19 17 43 43 H 1.09001 * 109.46904 * 299.99580 * 20 19 17 44 44 H 1.09001 * 109.47529 * 59.99560 * 22 21 20 45 45 H 1.09003 * 109.47079 * 299.99126 * 22 21 20 46 46 H 1.08999 * 110.49263 * 240.12451 * 25 23 22 47 47 H 1.09002 * 110.49294 * 2.64213 * 25 23 22 48 48 H 1.08997 * 110.91371 * 139.07473 * 26 25 23 49 49 H 1.09000 * 110.90698 * 262.65053 * 26 25 23 50 50 H 1.09005 * 110.61444 * 81.48407 * 27 26 25 51 51 H 1.09001 * 110.61564 * 204.31536 * 27 26 25 52 52 H 1.09003 * 109.58618 * 65.92755 * 29 16 15 53 53 H 1.09000 * 109.58860 * 186.35515 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2201 -0.3513 5 6 1.5319 2.3440 0.4516 6 7 0.3902 2.2701 1.1021 7 14 2.3211 4.0075 0.1361 8 1 3.5909 3.8194 -0.6106 9 1 1.3968 4.8499 -0.6647 10 1 2.6026 4.6756 1.4320 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6181 -3.3819 -1.2688 15 6 2.2510 -4.2123 -0.0349 16 7 2.4666 -3.3947 1.1667 17 6 3.2376 -3.8467 2.1755 18 8 3.4083 -3.1621 3.1619 19 6 3.8876 -5.2028 2.0778 20 6 4.7007 -5.4711 3.3458 21 8 5.3176 -6.7568 3.2529 22 6 6.1046 -7.1076 4.3929 23 6 6.7129 -8.4960 4.1850 24 1 7.2587 -8.5240 3.2420 25 6 7.6631 -8.8317 5.3508 26 6 7.0786 -10.1319 5.9545 27 6 6.2268 -10.6802 4.7813 28 8 5.6737 -9.4893 4.1813 29 6 1.8210 -2.0775 1.2502 30 1 -0.3633 0.0771 1.0248 31 1 -0.3633 0.8489 -0.5791 32 1 -0.3633 -0.9261 -0.4455 33 1 -0.0417 3.0794 1.4174 34 1 2.0692 -1.4895 -2.1398 35 1 0.7606 -2.2908 -1.2381 36 1 3.6859 -3.1634 -1.2556 37 1 2.3726 -3.9425 -2.1708 38 1 2.8819 -5.1001 0.0091 39 1 1.2034 -4.5084 -0.0921 40 1 4.5475 -5.2278 1.2106 41 1 3.1183 -5.9676 1.9712 42 1 4.0407 -5.4463 4.2128 43 1 5.4700 -4.7063 3.4527 44 1 5.4732 -7.1172 5.2814 45 1 6.9028 -6.3766 4.5222 46 1 8.6741 -9.0035 4.9816 47 1 7.6588 -8.0302 6.0895 48 1 7.8731 -10.8301 6.2178 49 1 6.4537 -9.9122 6.8201 50 1 6.8547 -11.2137 4.0676 51 1 5.4340 -11.3293 5.1532 52 1 0.7392 -2.2031 1.2955 53 1 2.1682 -1.5563 2.1423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714439914.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -129.300146 kcal Electronic energy + Delta-G solvation = -30049.339125 eV Core-core repulsion = 25920.769991 eV Total energy + Delta-G solvation = -4128.569134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30826 -40.49374 -39.12350 -38.44157 -36.78120 -34.10993 -33.31532 -32.89942 -32.79655 -31.23343 -30.19928 -28.07031 -26.83441 -26.04249 -25.39315 -24.04181 -23.04707 -22.98703 -21.93212 -20.94722 -19.81808 -18.83524 -18.52387 -17.73204 -17.52378 -17.09229 -16.98132 -16.67141 -16.47823 -16.45760 -15.78492 -15.67523 -15.24145 -15.22338 -14.87177 -14.57172 -14.51283 -14.39109 -14.25636 -13.85228 -13.63058 -13.47312 -13.23890 -12.91988 -12.84782 -12.65981 -12.51954 -12.46631 -12.32645 -12.25284 -12.17896 -12.09037 -12.03383 -12.00651 -11.73897 -11.62124 -11.56422 -11.38987 -10.87648 -10.67285 -10.65715 -10.63896 -9.69833 -8.78306 -7.85558 -5.33654 1.42985 1.43925 1.54642 1.57796 1.84005 2.47875 2.64551 2.93312 3.27896 3.58285 3.61304 3.62610 3.81036 3.96584 3.97265 4.01565 4.04894 4.11577 4.15513 4.20260 4.25572 4.33220 4.38425 4.41424 4.47312 4.48590 4.60192 4.64655 4.70531 4.77590 4.78350 4.82180 4.82605 4.91418 4.92604 4.95848 4.97494 5.06397 5.07982 5.17573 5.18965 5.26449 5.42913 5.49899 5.56673 5.61595 5.70821 5.95340 6.15711 6.30338 6.44717 7.11766 7.14493 7.84641 8.26898 9.17452 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.001852 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.322320 B =15115.140168 C =15818.455088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.609 5.609 3 C -0.263 4.263 4 H 0.068 0.932 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.266 1.266 9 H -0.287 1.287 10 H -0.295 1.295 11 C 0.167 3.833 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.122 4.122 15 C 0.100 3.900 16 N -0.605 5.605 17 C 0.508 3.492 18 O -0.597 6.597 19 C -0.122 4.122 20 C 0.082 3.918 21 O -0.393 6.393 22 C 0.058 3.942 23 C 0.076 3.924 24 H 0.076 0.924 25 C -0.148 4.148 26 C -0.152 4.152 27 C 0.034 3.966 28 O -0.397 6.397 29 C 0.113 3.887 30 H -0.003 1.003 31 H 0.017 0.983 32 H 0.036 0.964 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.099 0.901 52 H 0.058 0.942 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -28.900 2.286 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.191 1.191 9 H -0.213 1.213 10 H -0.222 1.222 11 C 0.059 3.941 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.021 4.021 16 N -0.337 5.337 17 C 0.298 3.702 18 O -0.478 6.478 19 C -0.162 4.162 20 C 0.005 3.995 21 O -0.313 6.313 22 C -0.018 4.018 23 C 0.018 3.982 24 H 0.094 0.906 25 C -0.185 4.185 26 C -0.189 4.189 27 C -0.042 4.042 28 O -0.317 6.317 29 C -0.012 4.012 30 H 0.016 0.984 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.117 0.883 52 H 0.077 0.923 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.518 -28.500 2.588 31.236 hybrid contribution 0.073 1.889 0.640 1.996 sum 12.591 -26.611 3.228 29.616 Atomic orbital electron populations 1.20483 0.82521 0.96182 0.97233 1.44186 1.02212 1.01047 1.85750 1.19580 0.97937 0.86583 1.35265 0.91466 1.25807 0.98587 1.01927 0.98633 1.70249 1.19738 1.27389 1.41149 0.85165 0.78119 0.79947 0.76998 1.19075 1.21346 1.22189 1.20878 0.94828 0.85179 0.93194 0.93709 1.21933 1.00596 0.96445 0.97303 1.21890 1.00227 0.95215 0.98758 1.22162 1.03534 0.93961 0.82402 1.48329 1.48177 1.18119 1.19093 1.21125 0.78283 0.88880 0.81892 1.90695 1.63391 1.60543 1.33184 1.21428 1.01357 0.92931 1.00452 1.22012 0.95822 0.84457 0.97252 1.87813 1.67002 1.34755 1.41709 1.22914 0.94811 0.95607 0.88514 1.22859 0.88442 0.87063 0.99811 0.90581 1.22965 0.99616 0.98998 0.96942 1.23149 1.00411 0.96989 0.98388 1.23786 0.98195 0.88002 0.94173 1.88957 1.36697 1.23381 1.82655 1.22071 0.96377 0.82978 0.99788 0.98424 0.96374 0.94599 0.94258 0.92515 0.91835 0.91782 0.87322 0.86240 0.89742 0.85604 0.85807 0.93772 0.93274 0.92998 0.90515 0.88400 0.89568 0.88002 0.90638 0.91135 0.88275 0.92331 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 7.91 127.77 1.01 10.07 16 2 N -0.61 -31.26 2.82 -701.53 -1.98 -33.23 16 3 C -0.26 -15.01 9.60 84.03 0.81 -14.21 16 4 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 5 C -0.05 -3.17 5.11 84.86 0.43 -2.74 16 6 N -0.94 -57.41 10.63 21.65 0.23 -57.18 16 7 Si 0.97 46.68 29.57 68.60 2.03 48.71 16 8 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 11 C 0.17 6.91 2.75 45.22 0.12 7.03 16 12 H 0.04 2.00 7.86 -2.39 -0.02 1.98 16 13 C -0.12 -3.81 5.13 30.62 0.16 -3.66 16 14 C -0.12 -2.54 6.08 30.67 0.19 -2.36 16 15 C 0.10 1.96 6.34 86.36 0.55 2.51 16 16 N -0.60 -18.36 2.97 -818.04 -2.43 -20.79 16 17 C 0.51 16.10 7.70 87.66 0.67 16.77 16 18 O -0.60 -25.13 15.39 -3.02 -0.05 -25.18 16 19 C -0.12 -2.62 4.42 29.85 0.13 -2.49 16 20 C 0.08 1.97 5.23 71.98 0.38 2.34 16 21 O -0.39 -9.04 10.34 -147.43 -1.52 -10.57 16 22 C 0.06 1.06 5.39 71.98 0.39 1.45 16 23 C 0.08 1.20 3.71 30.97 0.11 1.31 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 C -0.15 -1.38 6.64 31.58 0.21 -1.17 16 26 C -0.15 -1.26 7.15 31.90 0.23 -1.03 16 27 C 0.03 0.40 7.72 72.67 0.56 0.97 16 28 O -0.40 -7.92 11.18 -147.43 -1.65 -9.57 16 29 C 0.11 4.54 5.81 86.51 0.50 5.04 16 30 H 0.00 -0.14 7.41 -2.39 -0.02 -0.16 16 31 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 32 H 0.04 1.50 6.46 -2.39 -0.02 1.48 16 33 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.92 6.71 -2.39 -0.02 1.90 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.12 1.51 5.93 -2.39 -0.01 1.49 16 39 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.13 2.10 7.69 -2.39 -0.02 2.08 16 41 H 0.12 2.12 7.94 -2.39 -0.02 2.10 16 42 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.09 0.73 7.70 -2.39 -0.02 0.71 16 48 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.06 2.36 7.53 -2.39 -0.02 2.34 16 53 H 0.04 2.17 7.00 -2.39 -0.02 2.15 16 Total: -1.00 -78.12 410.38 1.96 -76.17 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.87 Total: 11.79 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.45 Total: 19.85 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.17 Total: -111.20 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -3.22 Total: -45.32 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.12 1.96 -76.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714439914.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.134 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds