Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99941 * 2 1 4 4 H 1.08008 * 120.00040 * 200.40579 * 3 2 1 5 5 C 1.38813 * 120.00279 * 20.40218 * 3 2 1 6 6 N 1.31622 * 119.99667 * 14.99082 * 5 3 2 7 7 Si 1.86790 * 120.00302 * 194.98608 * 5 3 2 8 8 H 1.48502 * 109.47495 * 85.00615 * 7 5 3 9 9 H 1.48497 * 109.47338 * 205.00582 * 7 5 3 10 10 H 1.48497 * 109.47420 * 325.00525 * 7 5 3 11 11 C 1.46501 * 120.00071 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49546 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49444 * 299.99827 * 11 2 1 14 14 C 1.53048 * 109.53590 * 181.34813 * 13 11 2 15 15 C 1.53189 * 109.31370 * 298.63699 * 14 13 11 16 16 N 1.46924 * 108.77626 * 54.63323 * 15 14 13 17 17 C 1.34781 * 120.62786 * 126.37045 * 16 15 14 18 18 O 1.21280 * 119.99743 * 180.02562 * 17 16 15 19 19 C 1.50693 * 119.99943 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46760 * 180.02562 * 19 17 16 21 21 O 1.42905 * 109.46859 * 180.02562 * 20 19 17 22 22 C 1.42900 * 113.99991 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47360 * 180.02562 * 22 21 20 24 24 H 1.08998 * 110.33320 * 52.74593 * 23 22 21 25 25 C 1.54475 * 110.37370 * 175.00194 * 23 22 21 26 26 C 1.54506 * 104.06483 * 142.80862 * 25 23 22 27 27 C 1.54476 * 104.18368 * 359.92931 * 26 25 23 28 28 O 1.44430 * 110.36930 * 290.38226 * 23 22 21 29 29 C 1.46931 * 118.73938 * 306.64383 * 16 15 14 30 30 H 1.08995 * 109.47535 * 275.12300 * 1 2 3 31 31 H 1.09000 * 109.47316 * 35.12276 * 1 2 3 32 32 H 1.09003 * 109.47433 * 155.12008 * 1 2 3 33 33 H 0.96998 * 119.99852 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.45929 * 61.32994 * 13 11 2 35 35 H 1.08999 * 109.45977 * 301.36987 * 13 11 2 36 36 H 1.08999 * 109.49503 * 178.68339 * 14 13 11 37 37 H 1.09003 * 109.52099 * 58.60063 * 14 13 11 38 38 H 1.09001 * 109.58513 * 294.84474 * 15 14 13 39 39 H 1.08994 * 109.70328 * 174.49217 * 15 14 13 40 40 H 1.08996 * 109.47295 * 60.00274 * 19 17 16 41 41 H 1.09002 * 109.47411 * 299.99994 * 19 17 16 42 42 H 1.08996 * 109.47170 * 59.99981 * 20 19 17 43 43 H 1.09000 * 109.47173 * 299.99288 * 20 19 17 44 44 H 1.09003 * 109.47295 * 59.99454 * 22 21 20 45 45 H 1.09001 * 109.46806 * 299.99929 * 22 21 20 46 46 H 1.09003 * 110.51444 * 24.15859 * 25 23 22 47 47 H 1.09010 * 110.62525 * 261.51310 * 25 23 22 48 48 H 1.09004 * 110.51089 * 118.64224 * 26 25 23 49 49 H 1.09002 * 110.50946 * 241.21199 * 26 25 23 50 50 H 1.09000 * 110.37015 * 94.92009 * 27 26 25 51 51 H 1.09001 * 110.37341 * 217.26028 * 27 26 25 52 52 H 1.08999 * 109.58174 * 173.14395 * 29 16 15 53 53 H 1.09001 * 109.58243 * 293.56742 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1789 1.2153 -0.3261 5 6 1.5209 2.3504 0.4191 6 7 0.3882 2.2832 1.0860 7 14 2.2824 4.0126 0.0366 8 1 1.8674 4.4466 -1.3216 9 1 1.8229 5.0095 1.0367 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8282 -2.0722 1.2485 14 6 2.6182 -3.3830 1.2659 15 6 2.2510 -4.2123 0.0314 16 7 2.4666 -3.3937 -1.1695 17 6 3.2383 -3.8446 -2.1783 18 8 3.4090 -3.1591 -3.1642 19 6 3.8899 -5.1998 -2.0808 20 6 4.7045 -5.4664 -3.3483 21 8 5.3220 -6.7518 -3.2561 22 6 6.1104 -7.1010 -4.3956 23 6 6.7192 -8.4893 -4.1886 24 1 5.9420 -9.2093 -3.9326 25 6 7.4732 -8.9407 -5.4590 26 6 8.7063 -9.6964 -4.9153 27 6 8.5551 -9.6123 -3.3802 28 8 7.7283 -8.4469 -3.1561 29 6 1.8300 -2.0718 -1.2470 30 1 -0.3634 0.0918 1.0235 31 1 -0.3634 0.8405 -0.5912 32 1 -0.3634 -0.9323 -0.4324 33 1 -0.0510 3.0969 1.3792 34 1 0.7607 -2.2918 1.2365 35 1 2.0692 -1.4910 2.1385 36 1 2.3721 -3.9440 2.1675 37 1 3.6861 -3.1648 1.2532 38 1 1.2035 -4.5085 0.0885 39 1 2.8800 -5.1012 -0.0145 40 1 3.1216 -5.9656 -1.9746 41 1 4.5497 -5.2243 -1.2135 42 1 5.4728 -4.7005 -3.4541 43 1 4.0451 -5.4419 -4.2158 44 1 6.9082 -6.3693 -4.5235 45 1 5.4799 -7.1100 -5.2847 46 1 7.7834 -8.0765 -6.0466 47 1 6.8515 -9.6057 -6.0587 48 1 8.6929 -10.7356 -5.2440 49 1 9.6261 -9.2072 -5.2359 50 1 8.0618 -10.5060 -2.9980 51 1 9.5299 -9.4851 -2.9093 52 1 2.1834 -1.5477 -2.1350 53 1 0.7476 -2.1899 -1.2964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714439915.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -128.407234 kcal Electronic energy + Delta-G solvation = -29994.548607 eV Core-core repulsion = 25866.018193 eV Total energy + Delta-G solvation = -4128.530414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.32428 -40.43727 -39.14642 -38.45224 -36.78705 -34.10346 -33.26878 -32.91038 -32.83787 -31.24005 -30.21938 -28.07631 -26.85101 -26.09288 -25.40165 -24.05667 -23.03966 -22.90872 -21.91546 -20.96167 -19.81817 -18.82875 -18.50812 -17.79612 -17.41821 -17.13264 -16.95172 -16.61970 -16.55865 -16.43712 -15.85359 -15.67655 -15.32158 -15.17405 -14.85358 -14.63209 -14.52380 -14.44400 -14.22074 -13.75139 -13.64728 -13.61228 -13.14329 -12.90081 -12.81970 -12.66996 -12.52415 -12.47797 -12.30961 -12.25230 -12.18666 -12.08036 -12.06276 -11.92555 -11.79528 -11.66461 -11.48344 -11.39286 -10.88978 -10.72891 -10.66860 -10.65330 -9.71554 -8.79901 -7.85520 -5.31410 1.42841 1.45267 1.52721 1.57358 1.83559 2.47948 2.63930 2.93765 3.26749 3.57868 3.60423 3.67115 3.81580 3.95954 3.99978 4.01303 4.06014 4.11332 4.15389 4.18315 4.24519 4.35162 4.37237 4.41434 4.48685 4.51453 4.55381 4.64344 4.71755 4.75307 4.78887 4.82252 4.84083 4.89104 4.91361 4.92612 4.96921 5.03780 5.09994 5.15372 5.17122 5.27732 5.43851 5.49256 5.51342 5.62471 5.71145 5.90816 6.14038 6.29367 6.43819 7.11167 7.13946 7.84583 8.26110 9.17060 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.001824 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.923056 B =15347.585645 C =15873.951544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.265 4.265 4 H 0.062 0.938 5 C -0.049 4.049 6 N -0.933 5.933 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.273 1.273 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.103 3.897 16 N -0.604 5.604 17 C 0.512 3.488 18 O -0.593 6.593 19 C -0.124 4.124 20 C 0.082 3.918 21 O -0.395 6.395 22 C 0.063 3.937 23 C 0.074 3.926 24 H 0.080 0.920 25 C -0.146 4.146 26 C -0.152 4.152 27 C 0.033 3.967 28 O -0.398 6.398 29 C 0.113 3.887 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.032 0.968 33 H 0.249 0.751 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.056 0.944 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.405 -29.690 -8.672 32.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.198 1.198 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.018 4.018 16 N -0.337 5.337 17 C 0.302 3.698 18 O -0.474 6.474 19 C -0.164 4.164 20 C 0.005 3.995 21 O -0.315 6.315 22 C -0.014 4.014 23 C 0.016 3.984 24 H 0.098 0.902 25 C -0.184 4.184 26 C -0.189 4.189 27 C -0.043 4.043 28 O -0.318 6.318 29 C -0.012 4.012 30 H 0.027 0.973 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.115 0.885 52 H 0.075 0.925 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.387 -29.157 -8.785 32.511 hybrid contribution 0.099 1.827 -0.339 1.861 sum 11.487 -27.330 -9.124 31.018 Atomic orbital electron populations 1.20491 0.82448 0.95731 0.97747 1.44105 1.02197 1.00984 1.85992 1.19480 0.96933 0.86486 1.36662 0.92009 1.25651 0.98624 1.01354 0.98849 1.70229 1.20051 1.27199 1.40524 0.85307 0.78181 0.79984 0.77122 1.21398 1.21664 1.19806 1.20623 0.94756 0.85358 0.93360 0.93922 1.21945 1.00307 0.96371 0.97643 1.21899 1.00057 0.95271 0.99025 1.22116 1.03654 0.93803 0.82202 1.48249 1.48531 1.17779 1.19096 1.21044 0.78014 0.88880 0.81891 1.90687 1.63223 1.60401 1.33111 1.21438 1.01311 0.93277 1.00360 1.22027 0.95652 0.84362 0.97486 1.87807 1.66564 1.34784 1.42295 1.22740 0.94126 0.95617 0.88890 1.23117 0.91226 0.95826 0.88217 0.90232 1.22946 0.97188 1.01560 0.96720 1.22944 0.98651 1.02387 0.94932 1.23662 0.95790 0.88507 0.96333 1.89232 1.43741 1.46276 1.52574 1.21819 0.97105 0.83000 0.99306 0.97336 0.96910 0.95004 0.94178 0.92212 0.94032 0.87820 0.92032 0.89476 0.86188 0.85299 0.86267 0.93969 0.92709 0.93023 0.90002 0.90208 0.88213 0.88546 0.90303 0.91337 0.88457 0.92536 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 8.03 127.77 1.03 10.05 16 2 N -0.61 -31.36 2.82 -703.17 -1.98 -33.34 16 3 C -0.27 -15.23 9.61 84.03 0.81 -14.42 16 4 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 5 C -0.05 -2.85 5.06 84.86 0.43 -2.42 16 6 N -0.93 -55.98 10.67 21.65 0.23 -55.75 16 7 Si 0.97 46.76 29.58 68.60 2.03 48.79 16 8 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 C 0.17 6.94 2.72 44.92 0.12 7.06 16 12 H 0.04 1.92 7.85 -2.39 -0.02 1.91 16 13 C -0.12 -4.18 5.15 30.62 0.16 -4.02 16 14 C -0.12 -2.83 6.08 30.67 0.19 -2.64 16 15 C 0.10 2.00 6.34 86.36 0.55 2.55 16 16 N -0.60 -17.30 2.98 -819.75 -2.44 -19.74 16 17 C 0.51 15.07 7.70 87.65 0.67 15.75 16 18 O -0.59 -23.07 15.40 -3.03 -0.05 -23.11 16 19 C -0.12 -2.49 4.42 29.85 0.13 -2.36 16 20 C 0.08 1.84 5.23 71.98 0.38 2.21 16 21 O -0.39 -8.60 10.34 -148.94 -1.54 -10.14 16 22 C 0.06 1.08 5.54 71.98 0.40 1.48 16 23 C 0.07 1.11 3.58 31.10 0.11 1.22 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.15 -1.35 6.63 31.61 0.21 -1.14 16 26 C -0.15 -1.21 7.08 31.61 0.22 -0.99 16 27 C 0.03 0.40 7.65 72.48 0.55 0.95 16 28 O -0.40 -7.96 11.35 -148.94 -1.69 -9.65 16 29 C 0.11 4.19 5.77 86.22 0.50 4.68 16 30 H 0.01 0.45 7.40 -2.39 -0.02 0.44 16 31 H 0.01 0.68 7.22 -2.39 -0.02 0.66 16 32 H 0.03 1.34 6.36 -2.39 -0.02 1.33 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 34 H 0.06 1.99 7.72 -2.39 -0.02 1.98 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.49 5.93 -2.39 -0.01 1.48 16 40 H 0.13 1.87 7.94 -2.39 -0.02 1.85 16 41 H 0.12 2.03 7.70 -2.39 -0.02 2.01 16 42 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 0.72 7.87 -2.39 -0.02 0.70 16 47 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.06 2.48 7.01 -2.39 -0.02 2.46 16 53 H 0.07 2.43 6.49 -2.39 -0.02 2.41 16 Total: -1.00 -76.01 410.54 1.88 -74.13 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.87 Total: 10.84 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.46 Total: 17.98 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.19 Total: -108.83 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -3.28 Total: -42.90 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -76.01 1.88 -74.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714439915.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.281 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds