Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99893 * 2 1 4 4 O 1.21274 * 119.99897 * 179.73022 * 3 2 1 5 5 C 1.50695 * 119.99635 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47004 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47542 * 179.97438 * 6 5 3 8 8 O 1.42896 * 109.47504 * 180.02562 * 7 6 5 9 9 C 1.42897 * 114.00089 * 180.02562 * 8 7 6 10 10 C 1.53182 * 109.54545 * 269.82221 * 9 8 7 11 11 C 1.53101 * 109.15761 * 183.24348 * 10 9 8 12 12 O 1.42902 * 109.48857 * 57.47421 * 11 10 9 13 13 C 1.42900 * 114.09519 * 298.88815 * 12 11 10 14 14 C 1.53086 * 109.41937 * 61.15894 * 13 12 11 15 15 C 1.46499 * 120.00136 * 180.02562 * 2 1 3 16 16 H 1.09001 * 110.64006 * 181.68779 * 15 2 1 17 17 C 1.55154 * 110.71884 * 305.01816 * 15 2 1 18 18 C 1.54917 * 101.57751 * 153.86547 * 17 15 2 19 19 N 1.47425 * 104.83492 * 322.99379 * 18 17 15 20 20 C 1.36935 * 125.64641 * 204.09417 * 19 18 17 21 21 H 1.08002 * 119.99683 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00156 * 0.04132 * 20 19 18 23 23 N 1.31616 * 120.00144 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99667 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47356 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47200 * 119.99838 * 24 22 20 27 27 H 1.48504 * 109.46959 * 239.99367 * 24 22 20 28 28 C 1.47018 * 108.70256 * 24.12750 * 19 18 17 29 29 H 1.08996 * 109.47008 * 90.00348 * 1 2 3 30 30 H 1.08997 * 109.46865 * 210.00034 * 1 2 3 31 31 H 1.08998 * 109.47058 * 329.99547 * 1 2 3 32 32 H 1.09005 * 109.47403 * 300.00056 * 5 3 2 33 33 H 1.09002 * 109.47422 * 60.00295 * 5 3 2 34 34 H 1.08997 * 109.47244 * 300.00535 * 6 5 3 35 35 H 1.09002 * 109.46787 * 59.99910 * 6 5 3 36 36 H 1.08997 * 109.47365 * 300.00556 * 7 6 5 37 37 H 1.09004 * 109.46747 * 59.99765 * 7 6 5 38 38 H 1.09003 * 109.54636 * 30.00048 * 9 8 7 39 39 H 1.09000 * 109.51617 * 303.06024 * 10 9 8 40 40 H 1.08996 * 109.51714 * 63.24574 * 10 9 8 41 41 H 1.09004 * 109.40266 * 297.48959 * 11 10 9 42 42 H 1.09003 * 109.49161 * 177.51106 * 11 10 9 43 43 H 1.09005 * 109.48401 * 301.17414 * 13 12 11 44 44 H 1.09008 * 109.48850 * 181.15008 * 13 12 11 45 45 H 1.08997 * 109.52642 * 182.48202 * 14 13 12 46 46 H 1.09001 * 109.57266 * 62.32142 * 14 13 12 47 47 H 1.08998 * 111.00910 * 271.93746 * 17 15 2 48 48 H 1.08996 * 111.00503 * 35.79667 * 17 15 2 49 49 H 1.08997 * 110.36545 * 204.15242 * 18 17 15 50 50 H 1.09003 * 110.45983 * 81.87887 * 18 17 15 51 51 H 0.96996 * 120.00386 * 180.02562 * 23 22 20 52 52 H 1.09003 * 109.88279 * 239.52902 * 28 19 18 53 53 H 1.09003 * 109.88384 * 118.35991 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 0.0049 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 6 1.6145 4.9603 0.0011 8 8 2.5430 6.0465 0.0009 9 6 1.9284 7.3365 0.0015 10 6 1.7115 7.8014 -1.4419 11 6 1.1278 9.2168 -1.4315 12 8 2.0086 10.0905 -0.7223 13 6 2.2097 9.7313 0.6461 14 6 2.8389 8.3376 0.7193 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0916 0.0296 17 6 1.7508 -2.1610 1.1875 18 6 2.0639 -3.5785 0.6467 19 7 1.7325 -3.5166 -0.7885 20 6 1.4005 -4.5854 -1.5777 21 1 1.1738 -4.4350 -2.6229 22 6 1.3549 -5.8618 -1.0342 23 7 1.6313 -6.0451 0.2395 24 14 0.9026 -7.3197 -2.1110 25 1 0.6396 -6.8502 -3.4950 26 1 2.0241 -8.2932 -2.1228 27 1 -0.3158 -7.9748 -1.5710 28 6 1.8183 -2.1177 -1.2323 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7582 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 3.0062 3.5771 0.8910 35 1 3.0061 3.5779 -0.8889 36 1 0.9881 5.0182 -0.8890 37 1 0.9875 5.0178 0.8909 38 1 0.9687 7.2830 0.5154 39 1 2.6649 7.8057 -1.9702 40 1 1.0196 7.1242 -1.9425 41 1 0.1551 9.2037 -0.9399 42 1 1.0125 9.5701 -2.4562 43 1 1.2511 9.7250 1.1650 44 1 2.8739 10.4553 1.1183 45 1 2.9525 8.0435 1.7627 46 1 3.8161 8.3523 0.2365 47 1 2.3374 -1.9452 2.0805 48 1 0.6851 -2.0446 1.3845 49 1 1.4432 -4.3213 1.1477 50 1 3.1196 -3.8135 0.7824 51 1 1.5998 -6.9371 0.6192 52 1 0.8540 -1.7930 -1.6235 53 1 2.5848 -2.0189 -2.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715031276.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -128.677787 kcal Electronic energy + Delta-G solvation = -29566.747736 eV Core-core repulsion = 25438.205590 eV Total energy + Delta-G solvation = -4128.542146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.21781 -40.56649 -39.09420 -38.49810 -36.26114 -35.00657 -34.03249 -33.00878 -32.09823 -31.15688 -29.47536 -28.07994 -27.54764 -26.27454 -25.13982 -24.58246 -23.10471 -22.15173 -21.67243 -21.20314 -19.92288 -18.97595 -18.37457 -17.98988 -17.33021 -17.23193 -16.95801 -16.84397 -16.56841 -16.24074 -15.95387 -15.77825 -15.39398 -15.09404 -14.94550 -14.52016 -14.46481 -14.09123 -14.00337 -13.77805 -13.60870 -13.44820 -13.28128 -13.17284 -13.00357 -12.82034 -12.72224 -12.52256 -12.40589 -12.35382 -12.20456 -12.13320 -11.99025 -11.85706 -11.84352 -11.66483 -11.39612 -11.32585 -10.84976 -10.76263 -10.65885 -10.42675 -9.63086 -8.93807 -7.79614 -5.25542 1.46743 1.48072 1.58301 1.62541 1.92474 2.48661 2.61945 2.96722 3.30788 3.52285 3.71011 3.75694 3.78129 3.86286 3.94967 3.97525 4.01907 4.05129 4.13585 4.20614 4.26377 4.27941 4.36367 4.46643 4.48764 4.53564 4.55673 4.59784 4.61145 4.68538 4.71162 4.76708 4.76882 4.83910 4.85179 4.96169 5.04943 5.05359 5.08392 5.10616 5.14849 5.19911 5.30059 5.43800 5.54305 5.59091 5.75524 6.23263 6.26674 6.31508 6.46571 7.07347 7.18055 7.73188 8.37040 9.22350 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.037503 B = 0.001527 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.430188 B =18335.767592 C =18646.923443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.505 3.495 4 O -0.594 6.594 5 C -0.121 4.121 6 C -0.100 4.100 7 C 0.066 3.934 8 O -0.406 6.406 9 C 0.084 3.916 10 C -0.177 4.177 11 C 0.062 3.938 12 O -0.406 6.406 13 C 0.063 3.937 14 C -0.155 4.155 15 C 0.139 3.861 16 H 0.079 0.921 17 C -0.132 4.132 18 C 0.155 3.845 19 N -0.622 5.622 20 C -0.240 4.240 21 H 0.081 0.919 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.983 3.017 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.132 3.868 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.083 0.917 50 H -0.017 1.017 51 H 0.248 0.752 52 H 0.044 0.956 53 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 31.670 2.304 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.295 3.705 4 O -0.474 6.474 5 C -0.160 4.160 6 C -0.139 4.139 7 C -0.010 4.010 8 O -0.326 6.326 9 C 0.027 3.973 10 C -0.215 4.215 11 C -0.015 4.015 12 O -0.325 6.325 13 C -0.013 4.013 14 C -0.192 4.192 15 C 0.034 3.966 16 H 0.097 0.903 17 C -0.171 4.171 18 C 0.030 3.970 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.811 3.189 25 H -0.192 1.192 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.005 3.995 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.001 0.999 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -7.530 31.603 2.210 32.563 hybrid contribution 0.244 -1.723 -0.505 1.812 sum -7.286 29.880 1.705 30.803 Atomic orbital electron populations 1.22093 0.77083 1.04910 1.03238 1.47928 1.08482 1.04586 1.72363 1.21499 0.87752 0.86570 0.74667 1.90683 1.16561 1.88061 1.52142 1.21589 0.98742 0.88356 1.07332 1.21143 0.97893 0.92097 1.02718 1.22589 0.91452 0.85121 1.01887 1.87930 1.35026 1.14449 1.95217 1.22239 0.96731 0.82777 0.95558 1.22724 1.02621 0.98432 0.97771 1.22685 0.92454 0.88121 0.98231 1.87923 1.67813 1.52563 1.24238 1.22703 1.01118 0.94877 0.82612 1.22310 0.99811 0.95141 1.01975 1.21752 0.96486 0.83071 0.95318 0.90286 1.23176 1.02005 0.95148 0.96790 1.21726 0.96391 0.94503 0.84390 1.44711 1.80845 1.02053 1.07214 1.19479 1.38658 0.86080 0.92694 0.90117 1.25644 1.02316 0.99983 0.97770 1.70029 1.56356 1.20881 1.12505 0.84949 0.76966 0.78852 0.78153 1.19153 1.22168 1.21369 1.21587 0.98117 0.84856 0.94925 0.91514 0.91195 0.86943 0.85812 0.85283 0.92513 0.92929 0.91497 0.91030 0.90157 0.92122 0.89454 0.91308 0.87673 0.91241 0.87295 0.89458 0.91990 0.90630 0.89709 0.89959 0.99908 0.94173 0.93858 0.97289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 9.13 127.77 1.17 2.45 16 2 N -0.60 -16.78 2.88 -815.98 -2.35 -19.14 16 3 C 0.50 13.99 7.67 87.65 0.67 14.66 16 4 O -0.59 -22.56 15.35 -3.01 -0.05 -22.60 16 5 C -0.12 -1.88 4.25 29.85 0.13 -1.75 16 6 C -0.10 -1.92 4.87 30.59 0.15 -1.77 16 7 C 0.07 0.88 5.75 71.98 0.41 1.30 16 8 O -0.41 -7.55 10.00 -148.98 -1.49 -9.04 16 9 C 0.08 1.10 2.69 30.72 0.08 1.18 16 10 C -0.18 -2.14 5.77 30.69 0.18 -1.97 16 11 C 0.06 0.62 6.84 72.02 0.49 1.11 16 12 O -0.41 -5.93 10.77 -148.98 -1.60 -7.53 16 13 C 0.06 0.63 6.84 72.01 0.49 1.13 16 14 C -0.15 -1.95 5.79 30.68 0.18 -1.77 16 15 C 0.14 5.16 3.36 46.18 0.16 5.32 16 16 H 0.08 3.34 6.99 -2.39 -0.02 3.32 16 17 C -0.13 -4.97 6.61 31.99 0.21 -4.76 16 18 C 0.16 7.77 5.89 86.86 0.51 8.28 16 19 N -0.62 -32.47 3.39 -691.97 -2.35 -34.82 16 20 C -0.24 -13.53 10.27 84.03 0.86 -12.66 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 22 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 23 N -0.95 -56.24 10.09 21.65 0.22 -56.02 16 24 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 C 0.13 5.64 6.88 86.73 0.60 6.24 16 29 H 0.07 1.17 7.89 -2.39 -0.02 1.15 16 30 H 0.07 1.53 6.08 -2.39 -0.01 1.51 16 31 H 0.11 1.13 6.44 -2.39 -0.02 1.11 16 32 H 0.12 1.27 8.11 -2.38 -0.02 1.25 16 33 H 0.13 1.17 7.40 -2.39 -0.02 1.15 16 34 H 0.06 1.32 8.10 -2.39 -0.02 1.31 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.07 0.67 7.97 -2.39 -0.02 0.65 16 37 H 0.07 0.66 8.09 -2.38 -0.02 0.64 16 38 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.83 7.97 -2.39 -0.02 0.81 16 41 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 44 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.08 2.88 6.09 -2.39 -0.01 2.86 16 49 H 0.08 4.58 5.87 -2.39 -0.01 4.57 16 50 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 51 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 52 H 0.04 1.72 6.94 -2.39 -0.02 1.71 16 53 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -76.98 408.86 2.03 -74.95 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.87 Total: 12.96 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.76 Total: 13.80 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.48 Total: -109.97 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -3.14 Total: -39.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.98 2.03 -74.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715031276.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.731 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds