Wall clock time and date at job start Sat Apr 11 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00138 * 2 1 4 4 C 1.53000 * 109.47243 * 149.99886 * 3 2 1 5 5 C 1.53002 * 109.46686 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47078 * 299.99435 * 5 4 3 7 7 C 1.50704 * 109.46957 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99913 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99760 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00102 * 185.23065 * 9 7 6 11 11 C 1.53008 * 109.45604 * 55.07826 * 10 9 7 12 12 O 1.42900 * 109.47420 * 54.70813 * 11 10 9 13 13 C 1.53040 * 109.45193 * 175.04130 * 10 9 7 14 14 C 1.53194 * 109.31089 * 58.64909 * 13 10 9 15 15 N 1.46930 * 108.77465 * 54.63563 * 14 13 10 16 16 C 1.36935 * 120.63008 * 126.40935 * 15 14 13 17 17 H 1.08000 * 119.99966 * 210.58010 * 16 15 14 18 18 C 1.38808 * 119.99706 * 30.58582 * 16 15 14 19 19 N 1.31616 * 120.00629 * 14.89855 * 18 16 15 20 20 Si 1.86802 * 119.99797 * 194.89849 * 18 16 15 21 21 H 1.48495 * 109.47347 * 89.99851 * 20 18 16 22 22 H 1.48506 * 109.47234 * 209.99869 * 20 18 16 23 23 H 1.48501 * 109.47010 * 329.99717 * 20 18 16 24 24 C 1.46927 * 118.73680 * 306.39029 * 15 14 13 25 25 C 1.53035 * 109.46176 * 295.10854 * 10 9 7 26 26 C 1.53000 * 109.46901 * 60.00696 * 6 5 4 27 27 C 1.53001 * 109.47233 * 270.00454 * 3 2 1 28 28 H 1.08994 * 109.47130 * 299.99573 * 1 2 3 29 29 H 1.09004 * 109.47055 * 59.99929 * 1 2 3 30 30 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47080 * 29.99891 * 3 2 1 32 32 H 1.08995 * 109.46756 * 60.00329 * 4 3 2 33 33 H 1.08998 * 109.46752 * 300.00012 * 4 3 2 34 34 H 1.09005 * 109.46717 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.47726 * 60.00345 * 5 4 3 36 36 H 1.08997 * 109.47185 * 300.00655 * 6 5 4 37 37 H 0.97002 * 119.99892 * 5.22845 * 9 7 6 38 38 H 1.08997 * 109.46941 * 294.70737 * 11 10 9 39 39 H 1.09001 * 109.46669 * 174.70368 * 11 10 9 40 40 H 0.96695 * 114.00428 * 179.97438 * 12 11 10 41 41 H 1.08991 * 109.49900 * 178.60325 * 13 10 9 42 42 H 1.09004 * 109.49841 * 298.70076 * 13 10 9 43 43 H 1.09003 * 109.58686 * 294.84705 * 14 13 10 44 44 H 1.08992 * 109.58540 * 174.42266 * 14 13 10 45 45 H 0.97002 * 120.00571 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58820 * 293.82085 * 24 15 14 47 47 H 1.08997 * 109.70335 * 173.46238 * 24 15 14 48 48 H 1.09001 * 109.49886 * 61.30534 * 25 10 9 49 49 H 1.08993 * 109.49757 * 181.40408 * 25 10 9 50 50 H 1.09000 * 109.47383 * 59.99484 * 26 6 5 51 51 H 1.08995 * 109.47552 * 179.97438 * 26 6 5 52 52 H 1.08997 * 109.46653 * 299.99505 * 27 3 2 53 53 H 1.08992 * 109.47584 * 59.99741 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 0.7213 5 6 3.9809 2.6612 0.7218 6 6 4.1883 3.1276 -0.7206 7 6 4.8015 4.5042 -0.7201 8 8 5.0478 5.0579 0.3304 9 7 5.0751 5.1204 -1.8871 10 6 5.7750 6.4074 -1.8894 11 6 7.0907 6.2735 -1.1199 12 8 7.8575 5.2007 -1.6705 13 6 6.0685 6.8254 -3.3321 14 6 4.7516 6.9247 -4.1086 15 7 3.8461 7.8316 -3.3898 16 6 3.2729 8.8974 -4.0306 17 1 3.0399 9.7969 -3.4801 18 6 2.9910 8.8215 -5.3877 19 7 2.9946 7.6547 -5.9965 20 14 2.6066 10.3758 -6.3500 21 1 3.8652 10.9438 -6.8963 22 1 1.6843 10.0507 -7.4676 23 1 1.9646 11.3684 -5.4512 24 6 3.5672 7.5729 -1.9707 25 6 4.8974 7.4663 -1.2182 26 6 2.8397 3.1698 -1.4419 27 6 2.2176 1.7714 -1.4425 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.3450 1.9994 0.5138 32 1 4.0241 0.5694 0.2074 33 1 3.2111 0.9313 1.7489 34 1 4.9419 2.6310 1.2352 35 1 3.3155 3.3547 1.2358 36 1 4.8537 2.4339 -1.2346 37 1 4.8087 4.7117 -2.7255 38 1 6.8786 6.0674 -0.0708 39 1 7.6551 7.2024 -1.2009 40 1 8.7068 5.0581 -1.2307 41 1 6.5670 7.7945 -3.3358 42 1 6.7128 6.0824 -3.8022 43 1 4.2962 5.9373 -4.1835 44 1 4.9449 7.3169 -5.1069 45 1 2.7980 7.6017 -6.9449 46 1 3.0151 6.6383 -1.8712 47 1 2.9779 8.3912 -1.5569 48 1 4.7081 7.1795 -0.1837 49 1 5.4070 8.4294 -1.2418 50 1 2.1742 3.8633 -0.9278 51 1 2.9873 3.5024 -2.4693 52 1 2.8829 1.0775 -1.9563 53 1 1.2569 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717352573.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:02 Heat of formation + Delta-G solvation = -148.550885 kcal Electronic energy + Delta-G solvation = -32403.475345 eV Core-core repulsion = 28274.071436 eV Total energy + Delta-G solvation = -4129.403908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.72229 -40.16284 -38.90986 -37.46284 -36.97117 -35.59291 -33.72568 -32.33123 -31.67749 -31.63995 -30.73066 -28.34215 -27.39914 -25.63334 -24.43864 -23.95503 -23.64895 -22.57523 -21.66523 -20.72654 -20.10882 -18.84955 -18.26468 -18.01807 -17.50244 -16.88784 -16.83540 -16.39826 -16.06462 -15.99750 -15.68179 -15.55951 -15.27243 -14.96043 -14.84962 -14.71725 -14.48555 -14.18405 -14.06785 -13.82702 -13.31463 -13.27255 -13.19717 -13.09144 -13.03446 -12.86881 -12.63137 -12.56559 -12.24084 -12.22187 -12.11729 -11.98452 -11.91215 -11.82278 -11.54905 -11.43135 -11.32316 -11.26079 -10.97907 -10.54808 -10.39770 -10.24266 -9.84110 -8.62913 -7.87126 -5.34857 1.46943 1.48507 1.56652 1.78732 2.30848 2.51105 2.80462 3.26775 3.32588 3.64765 3.67801 3.70863 3.72114 3.97911 4.01798 4.12827 4.16168 4.24652 4.29832 4.37513 4.45244 4.45585 4.49990 4.53908 4.55619 4.56707 4.66046 4.71883 4.74116 4.79309 4.80675 4.90209 4.91953 5.00825 5.03495 5.09633 5.12448 5.16750 5.18782 5.22761 5.27676 5.32890 5.40607 5.45378 5.64541 5.70275 5.74830 6.29142 6.40756 6.72704 6.91294 7.16557 7.38906 7.85329 8.38912 9.18531 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.003462 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.936777 B = 8085.783072 C = 9806.885800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.087 3.913 4 C -0.107 4.107 5 C -0.085 4.085 6 C -0.100 4.100 7 C 0.522 3.478 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.193 3.807 11 C 0.074 3.926 12 O -0.576 6.576 13 C -0.126 4.126 14 C 0.184 3.816 15 N -0.604 5.604 16 C -0.266 4.266 17 H 0.060 0.940 18 C -0.042 4.042 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.156 3.844 25 C -0.130 4.130 26 C -0.103 4.103 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.401 0.599 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.007 0.993 44 H 0.052 0.948 45 H 0.250 0.750 46 H 0.011 0.989 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.066 0.934 52 H 0.077 0.923 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -13.439 12.024 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.029 3.971 4 C -0.145 4.145 5 C -0.123 4.123 6 C -0.121 4.121 7 C 0.310 3.690 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.107 3.893 11 C -0.004 4.004 12 O -0.383 6.383 13 C -0.166 4.166 14 C 0.058 3.942 15 N -0.328 5.328 16 C -0.396 4.396 17 H 0.078 0.922 18 C -0.238 4.238 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.197 1.197 24 C 0.030 3.970 25 C -0.169 4.169 26 C -0.141 4.141 27 C -0.169 4.169 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.240 0.760 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.085 0.915 52 H 0.096 0.904 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.999 -13.271 12.202 18.275 hybrid contribution -0.285 1.109 -0.951 1.489 sum 2.714 -12.162 11.250 16.788 Atomic orbital electron populations 1.22947 0.80077 1.03688 1.00500 1.87861 1.20901 1.28289 1.95178 1.22216 0.95306 0.84144 0.95387 1.21535 0.94936 0.96726 1.01272 1.21199 1.01604 0.95683 0.93856 1.21375 0.97949 0.93218 0.99589 1.20891 0.77136 0.87938 0.83077 1.90566 1.55055 1.67504 1.32228 1.45978 1.58422 1.21595 1.08957 1.20179 0.90140 0.83344 0.95664 1.22486 0.91044 0.89899 0.97009 1.86422 1.35781 1.53924 1.62163 1.22223 0.99024 1.01083 0.94254 1.20511 0.87189 0.91633 0.94827 1.44219 1.51371 1.30742 1.06475 1.19441 1.34891 0.92627 0.92681 0.92203 1.25764 0.99892 0.98925 0.99193 1.70131 1.53665 1.23701 1.09909 0.85332 0.77399 0.79878 0.78185 1.21188 1.22085 1.19699 1.20807 0.94262 0.97293 0.84622 1.22192 0.97274 0.97937 0.99543 1.21411 0.94750 0.97588 1.00368 1.21948 1.01643 0.95835 0.97439 0.93382 0.93825 0.88371 0.92060 0.90557 0.90364 0.90827 0.92209 0.87131 0.76311 0.92348 0.92510 0.75998 0.91741 0.90804 0.97495 0.92943 0.94062 0.97131 0.93659 0.90732 0.91684 0.92380 0.91539 0.90441 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.40 -8.25 10.35 -148.98 -1.54 -9.79 16 3 C 0.09 1.69 2.61 30.59 0.08 1.77 16 4 C -0.11 -1.95 5.57 30.59 0.17 -1.77 16 5 C -0.09 -1.81 4.49 30.60 0.14 -1.67 16 6 C -0.10 -2.31 2.54 -11.54 -0.03 -2.34 16 7 C 0.52 15.48 6.57 87.66 0.58 16.05 16 8 O -0.57 -19.54 12.30 -3.04 -0.04 -19.58 16 9 N -0.70 -21.78 3.83 -422.80 -1.62 -23.39 16 10 C 0.19 6.38 0.44 3.63 0.00 6.38 16 11 C 0.07 2.11 5.54 71.98 0.40 2.51 16 12 O -0.58 -14.80 12.94 -148.98 -1.93 -16.73 16 13 C -0.13 -4.63 4.89 30.67 0.15 -4.48 16 14 C 0.18 8.43 5.00 86.36 0.43 8.86 16 15 N -0.60 -29.68 2.98 -699.08 -2.08 -31.77 16 16 C -0.27 -14.49 9.57 84.03 0.80 -13.68 16 17 H 0.06 3.24 7.87 -2.91 -0.02 3.21 16 18 C -0.04 -2.28 4.95 84.86 0.42 -1.86 16 19 N -0.93 -53.20 11.25 21.65 0.24 -52.96 16 20 Si 0.96 44.30 29.58 68.60 2.03 46.33 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.16 6.64 6.25 86.36 0.54 7.18 16 25 C -0.13 -4.67 4.74 30.67 0.15 -4.52 16 26 C -0.10 -2.38 5.10 30.61 0.16 -2.23 16 27 C -0.13 -2.62 5.54 30.61 0.17 -2.45 16 28 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.04 0.64 7.87 -2.38 -0.02 0.62 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 1.18 7.79 -2.38 -0.02 1.16 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.59 8.10 -2.38 -0.02 1.57 16 35 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.40 12.53 6.40 -92.71 -0.59 11.94 16 38 H 0.06 1.77 6.18 -2.39 -0.01 1.76 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.39 6.36 9.12 -74.06 -0.68 5.69 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.54 7.80 -2.38 -0.02 2.52 16 43 H 0.01 0.33 6.84 -2.39 -0.02 0.32 16 44 H 0.05 2.76 6.19 -2.39 -0.01 2.74 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 46 H 0.01 0.47 7.74 -2.39 -0.02 0.45 16 47 H 0.04 1.95 7.94 -2.39 -0.02 1.93 16 48 H 0.07 2.69 6.39 -2.39 -0.02 2.67 16 49 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.07 1.67 7.45 -2.39 -0.02 1.65 16 52 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 Total: -1.00 -65.27 398.49 0.08 -65.20 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.37 Total: 33.34 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.38 Total: 9.34 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -3.46 Total: -108.11 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -3.51 Total: -46.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.27 0.08 -65.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717352573.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.353 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds