Wall clock time and date at job start Sat Apr 11 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00191 * 2 1 4 4 H 1.09005 * 109.46781 * 337.71325 * 3 2 1 5 5 C 1.50700 * 109.47602 * 217.71536 * 3 2 1 6 6 O 1.21285 * 119.99632 * 354.99490 * 5 3 2 7 7 N 1.34773 * 120.00465 * 174.99945 * 5 3 2 8 8 C 1.46927 * 120.62575 * 359.71492 * 7 5 3 9 9 C 1.52764 * 109.00828 * 233.58097 * 8 7 5 10 10 C 1.53041 * 109.38443 * 305.59543 * 9 8 7 11 11 O 1.42898 * 109.44802 * 181.25231 * 10 9 8 12 12 C 1.42897 * 114.00354 * 89.93434 * 11 10 9 13 13 C 1.52998 * 109.47468 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47401 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47313 * 179.97438 * 14 13 12 16 16 C 1.36935 * 120.00077 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00496 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99457 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00493 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47150 * 120.00164 * 20 18 16 23 23 H 1.48505 * 109.47245 * 239.99783 * 20 18 16 24 24 C 1.53040 * 109.53971 * 61.23744 * 10 9 8 25 25 C 1.46923 * 120.63180 * 179.97438 * 7 5 3 26 26 C 1.53002 * 109.47292 * 97.70650 * 3 2 1 27 27 C 1.53006 * 117.49369 * 57.15346 * 26 3 2 28 28 C 1.53004 * 60.02725 * 252.49910 * 27 26 3 29 29 H 1.08994 * 109.47279 * 305.35115 * 1 2 3 30 30 H 1.09006 * 109.46738 * 65.35305 * 1 2 3 31 31 H 1.09004 * 109.47211 * 185.34857 * 1 2 3 32 32 H 1.08991 * 109.59209 * 353.42125 * 8 7 5 33 33 H 1.09001 * 109.58603 * 113.84639 * 8 7 5 34 34 H 1.08997 * 109.56520 * 185.55196 * 9 8 7 35 35 H 1.08999 * 109.35340 * 65.50384 * 9 8 7 36 36 H 1.09002 * 109.45625 * 301.21646 * 10 9 8 37 37 H 1.09000 * 109.47048 * 299.99958 * 12 11 10 38 38 H 1.09003 * 109.46845 * 59.99801 * 12 11 10 39 39 H 1.09000 * 109.46661 * 299.99839 * 13 12 11 40 40 H 1.08991 * 109.47357 * 59.99448 * 13 12 11 41 41 H 1.08998 * 109.47046 * 299.99816 * 14 13 12 42 42 H 1.09001 * 109.47731 * 59.99186 * 14 13 12 43 43 H 0.96996 * 120.00058 * 0.02562 * 15 14 13 44 44 H 0.97000 * 120.00041 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.49432 * 178.68610 * 24 10 9 46 46 H 1.08996 * 109.52700 * 58.60306 * 24 10 9 47 47 H 1.08996 * 109.58462 * 246.15394 * 25 7 5 48 48 H 1.08996 * 109.58417 * 6.44075 * 25 7 5 49 49 H 1.08999 * 115.54812 * 202.81911 * 26 3 2 50 50 H 1.08993 * 117.49869 * 359.97438 * 27 26 3 51 51 H 1.08999 * 117.49669 * 144.99577 * 27 26 3 52 52 H 1.08996 * 117.49620 * 107.50762 * 28 27 26 53 53 H 1.09000 * 117.49440 * 252.51828 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2893 2.0241 -0.3898 5 6 3.2413 1.3073 -0.8691 6 8 3.6387 0.2717 -1.3598 7 7 3.9008 2.4595 -1.1012 8 6 3.4280 3.7229 -0.5188 9 6 3.2612 4.7533 -1.6342 10 6 4.5716 4.8724 -2.4158 11 8 4.4261 5.8571 -3.4411 12 6 4.7754 7.1803 -3.0301 13 6 4.5818 8.1460 -4.2009 14 6 4.9564 9.5626 -3.7609 15 7 4.7715 10.4872 -4.8822 16 6 5.0455 11.8194 -4.7235 17 1 5.3983 12.1885 -3.7718 18 6 4.8699 12.6956 -5.7857 19 7 4.4405 12.2456 -6.9457 20 14 5.2443 14.5127 -5.5694 21 1 5.7107 14.7602 -4.1815 22 1 6.3049 14.9170 -6.5270 23 1 4.0155 15.3056 -5.8281 24 6 4.9137 3.5224 -3.0502 25 6 5.1028 2.4771 -1.9459 26 6 2.3944 1.6927 1.4295 27 6 3.3518 0.7644 2.1797 28 6 1.8719 0.8102 2.5658 29 1 -0.3633 0.5946 0.8381 30 1 -0.3633 0.4286 -0.9341 31 1 -0.3634 -1.0232 0.0958 32 1 2.4695 3.5618 -0.0256 33 1 4.1571 4.0870 0.2051 34 1 3.0060 5.7208 -1.2021 35 1 2.4648 4.4328 -2.3058 36 1 5.3726 5.1689 -1.7386 37 1 4.1370 7.4834 -2.2002 38 1 5.8178 7.1987 -2.7120 39 1 5.2200 7.8430 -5.0310 40 1 3.5393 8.1275 -4.5186 41 1 4.3185 9.8658 -2.9307 42 1 5.9990 9.5808 -3.4435 43 1 4.4544 10.1557 -5.7369 44 1 4.3181 12.8578 -7.6882 45 1 5.8347 3.6140 -3.6259 46 1 4.1021 3.2133 -3.7089 47 1 5.9710 2.7377 -1.3405 48 1 5.2502 1.4936 -2.3920 49 1 2.4778 2.7626 1.6204 50 1 3.7075 -0.1222 1.6550 51 1 4.0649 1.2237 2.8642 52 1 1.2546 -0.0463 2.2950 53 1 1.6116 1.2997 3.5042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717518364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:06 Heat of formation + Delta-G solvation = -110.734558 kcal Electronic energy + Delta-G solvation = -29833.498781 eV Core-core repulsion = 25705.734712 eV Total energy + Delta-G solvation = -4127.764069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.71356 -39.99579 -39.00896 -37.72186 -36.93341 -36.70099 -34.31769 -33.18342 -32.28985 -31.29865 -29.84872 -27.26464 -26.90716 -25.68600 -24.47721 -24.02166 -23.29649 -22.63876 -22.32691 -21.48258 -20.22726 -19.13706 -18.45204 -17.99089 -17.66025 -17.51389 -16.84028 -16.70305 -16.54932 -16.04558 -15.70395 -15.62294 -15.44187 -15.35943 -15.24954 -14.98917 -14.62690 -14.46586 -14.01279 -13.88531 -13.78864 -13.37589 -13.27915 -12.94779 -12.88215 -12.74363 -12.47345 -12.39247 -12.36850 -12.30655 -12.26564 -12.07302 -12.01964 -11.82378 -11.72649 -11.65871 -11.47746 -11.30654 -10.95613 -10.86500 -10.47748 -10.34633 -9.78896 -9.02637 -7.96250 -5.26393 1.46910 1.48065 1.49467 1.59704 1.68803 2.50528 2.65527 2.71665 2.86346 3.37726 3.45399 3.61421 3.68540 3.80834 3.85176 3.95495 3.98791 4.08855 4.11120 4.16266 4.21178 4.28329 4.29042 4.31462 4.38275 4.44537 4.50459 4.53349 4.60320 4.63310 4.72944 4.75232 4.77843 4.79436 4.82253 4.82490 4.83912 4.95069 4.98098 5.11813 5.16054 5.23260 5.29481 5.33860 5.34407 5.44787 5.49169 6.00221 6.25477 6.30858 6.35490 7.06894 7.31583 8.07227 8.29808 9.27839 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.001584 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.001920 B =17675.908453 C =17948.489936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.101 3.899 4 H 0.113 0.887 5 C 0.514 3.486 6 O -0.575 6.575 7 N -0.604 5.604 8 C 0.106 3.894 9 C -0.156 4.156 10 C 0.086 3.914 11 O -0.403 6.403 12 C 0.078 3.922 13 C -0.115 4.115 14 C 0.155 3.845 15 N -0.751 5.751 16 C -0.248 4.248 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.126 4.126 25 C 0.118 3.882 26 C -0.183 4.183 27 C -0.178 4.178 28 C -0.154 4.154 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.148 0.852 50 H 0.068 0.932 51 H 0.109 0.891 52 H 0.094 0.906 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 -24.841 23.131 34.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.040 3.960 4 H 0.131 0.869 5 C 0.303 3.697 6 O -0.453 6.453 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.195 4.195 10 C 0.028 3.972 11 O -0.323 6.323 12 C 0.001 3.999 13 C -0.153 4.153 14 C 0.029 3.971 15 N -0.394 5.394 16 C -0.379 4.379 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.164 4.164 25 C -0.004 4.004 26 C -0.201 4.201 27 C -0.215 4.215 28 C -0.190 4.190 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.166 0.834 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.113 0.887 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.603 -25.473 22.816 34.653 hybrid contribution -0.039 1.008 -0.901 1.352 sum -5.642 -24.465 21.916 33.327 Atomic orbital electron populations 1.23123 0.78787 1.04287 1.01324 1.87988 1.21744 1.25981 1.94759 1.21489 0.93292 0.87115 0.94112 0.86936 1.20944 0.85193 0.83032 0.80538 1.90685 1.68642 1.33344 1.52676 1.48138 1.27981 1.07808 1.49875 1.22037 1.02547 0.81613 0.95358 1.22371 0.98204 1.00715 0.98169 1.22195 0.97550 0.87972 0.89472 1.87918 1.88648 1.17022 1.38664 1.22353 0.99936 0.81368 0.96237 1.21486 1.01726 0.93426 0.98622 1.20673 0.97830 0.88240 0.90341 1.42627 1.80462 1.04770 1.11494 1.19732 1.35778 0.85337 0.97084 0.90172 1.25666 1.02914 1.02873 0.95713 1.69844 1.54296 1.35376 1.02735 0.84999 0.76864 0.79644 0.77784 1.18696 1.22047 1.21959 1.21928 1.03043 0.93332 0.98109 1.21570 0.87210 0.99707 0.91898 1.22951 1.07275 0.99390 0.90486 1.22857 0.94069 1.01130 1.03467 1.23017 0.96254 1.01687 0.98084 0.91454 0.93486 0.88458 0.87198 0.88307 0.88644 0.91929 0.90102 0.91546 0.91983 0.92564 0.92344 0.95323 0.95567 0.79591 0.93969 0.89574 0.92522 0.89019 0.90306 0.83439 0.91330 0.87265 0.88750 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.02 113.37 1.14 1.35 16 2 O -0.39 -7.12 8.55 -129.99 -1.11 -8.23 16 3 C 0.10 1.45 2.14 29.85 0.06 1.51 16 4 H 0.11 1.07 7.01 -2.38 -0.02 1.05 16 5 C 0.51 10.59 6.84 87.66 0.60 11.19 16 6 O -0.57 -17.56 15.92 15.94 0.25 -17.31 16 7 N -0.60 -9.20 2.98 -819.68 -2.44 -11.64 16 8 C 0.11 0.90 5.43 86.22 0.47 1.37 16 9 C -0.16 -1.95 5.68 30.53 0.17 -1.78 16 10 C 0.09 1.42 2.57 30.62 0.08 1.50 16 11 O -0.40 -9.78 9.99 -148.98 -1.49 -11.27 16 12 C 0.08 1.84 5.75 71.98 0.41 2.25 16 13 C -0.11 -3.72 5.70 30.59 0.17 -3.54 16 14 C 0.16 6.07 6.26 86.38 0.54 6.61 16 15 N -0.75 -38.90 5.60 -343.46 -1.92 -40.83 16 16 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 19 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 20 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 C -0.13 -2.17 5.73 30.69 0.18 -1.99 16 25 C 0.12 1.89 6.44 86.38 0.56 2.45 16 26 C -0.18 -1.73 4.86 -10.77 -0.05 -1.78 16 27 C -0.18 -2.24 9.85 30.60 0.30 -1.94 16 28 C -0.15 -1.41 9.61 30.62 0.29 -1.12 16 29 H 0.07 0.42 7.72 -2.39 -0.02 0.40 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.44 16 31 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.11 0.49 4.50 -2.39 -0.01 0.48 16 33 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.10 0.99 7.84 -2.39 -0.02 0.97 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.06 7.79 -2.39 -0.02 1.05 16 37 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 38 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.60 7.00 -2.39 -0.02 1.58 16 49 H 0.15 0.57 6.49 -2.39 -0.02 0.55 16 50 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.09 1.06 6.34 -2.39 -0.02 1.04 16 53 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.82 417.74 2.00 -75.81 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.18 Total: 26.62 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.23 Total: -1.17 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.08 Total: -112.49 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -2.35 Total: -36.81 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -77.82 2.00 -75.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.923 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds