Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00257 * 2 1 4 4 C 1.53002 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.54317 * 265.93513 * 4 3 2 6 6 O 1.21285 * 119.99611 * 233.99289 * 5 4 3 7 7 N 1.34775 * 120.00095 * 53.98567 * 5 4 3 8 8 C 1.46494 * 119.99936 * 4.85664 * 7 5 4 9 9 C 1.46500 * 120.00001 * 184.85749 * 7 5 4 10 10 H 1.09008 * 109.47060 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47028 * 240.00189 * 9 7 5 12 12 N 1.46501 * 109.47054 * 55.00029 * 11 9 7 13 13 C 1.36938 * 119.99777 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00401 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00335 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46811 * 90.00086 * 17 15 13 19 19 H 1.48498 * 109.47318 * 210.00508 * 17 15 13 20 20 H 1.48501 * 109.46938 * 330.00332 * 17 15 13 21 21 C 1.52995 * 109.47353 * 120.00003 * 9 7 5 22 22 C 1.53001 * 117.49691 * 185.00004 * 21 9 7 23 23 C 1.53001 * 60.03171 * 252.49708 * 22 21 9 24 24 C 1.53178 * 109.54545 * 26.10921 * 4 3 2 25 25 C 1.53278 * 109.06660 * 176.85304 * 24 4 3 26 26 O 1.42910 * 109.45799 * 302.44811 * 25 24 4 27 27 C 1.42894 * 114.09883 * 61.15931 * 26 25 24 28 28 C 1.53094 * 109.41349 * 298.83763 * 27 26 25 29 29 H 1.09006 * 109.46710 * 60.00044 * 1 2 3 30 30 H 1.08999 * 109.47656 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47132 * 300.00595 * 1 2 3 32 32 H 1.08993 * 109.47025 * 59.99724 * 3 2 1 33 33 H 1.08997 * 109.46942 * 299.99080 * 3 2 1 34 34 H 1.09002 * 109.47463 * 273.89552 * 8 7 5 35 35 H 1.09003 * 109.47446 * 33.89458 * 8 7 5 36 36 H 1.09002 * 109.46844 * 153.89561 * 8 7 5 37 37 H 1.09001 * 109.47296 * 174.99879 * 11 9 7 38 38 H 1.08995 * 109.47041 * 294.99629 * 11 9 7 39 39 H 0.96994 * 120.00456 * 359.97438 * 12 11 9 40 40 H 0.97001 * 120.00461 * 179.97438 * 16 15 13 41 41 H 1.09004 * 115.54997 * 330.66900 * 21 9 7 42 42 H 1.08996 * 117.50243 * 359.97438 * 22 21 9 43 43 H 1.09004 * 117.49688 * 144.99744 * 22 21 9 44 44 H 1.08994 * 117.49685 * 107.49875 * 23 22 21 45 45 H 1.08998 * 117.50250 * 252.52126 * 23 22 21 46 46 H 1.09005 * 109.52494 * 296.84092 * 24 4 3 47 47 H 1.09001 * 109.52376 * 57.03244 * 24 4 3 48 48 H 1.08990 * 109.46188 * 182.45113 * 25 24 4 49 49 H 1.09003 * 109.46937 * 62.44491 * 25 24 4 50 50 H 1.09004 * 109.47993 * 178.86426 * 27 26 25 51 51 H 1.09000 * 109.49699 * 58.82988 * 27 26 25 52 52 H 1.08994 * 109.52534 * 297.70675 * 28 27 26 53 53 H 1.09003 * 109.57554 * 177.54880 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0454 1.2453 1.4175 6 8 4.8966 2.0540 1.7214 7 7 3.5554 0.4011 2.3468 8 6 2.6064 -0.6451 1.9584 9 6 3.9719 0.5297 3.7455 10 1 4.6757 1.3567 3.8405 11 6 4.6457 -0.7672 4.1982 12 7 5.7476 -1.0887 3.2878 13 6 6.5008 -2.2134 3.4948 14 1 6.2823 -2.8637 4.3290 15 6 7.5445 -2.5184 2.6319 16 7 7.8104 -1.7262 1.6150 17 14 8.5724 -4.0522 2.9146 18 1 7.9658 -5.1957 2.1868 19 1 9.9518 -3.8228 2.4147 20 1 8.6168 -4.3575 4.3672 21 6 2.7459 0.7996 4.6200 22 6 2.9854 1.0822 6.1045 23 6 2.3796 -0.2535 5.6687 24 6 3.9441 -0.1483 -0.6342 25 6 5.4737 -0.2236 -0.6997 26 8 5.9738 0.8902 -1.4425 27 6 5.6611 2.1614 -0.8695 28 6 4.1410 2.3334 -0.8116 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 1.5945 -0.2399 1.9688 35 1 2.8458 -0.9987 0.9555 36 1 2.6726 -1.4751 2.6618 37 1 5.0344 -0.6412 5.2088 38 1 3.9173 -1.5780 4.1877 39 1 5.9431 -0.5053 2.5380 40 1 8.5399 -1.9390 1.0122 41 1 1.9281 1.3302 4.1322 42 1 4.0164 1.0753 6.4582 43 1 2.3252 1.7986 6.5934 44 1 3.0121 -1.1387 5.7356 45 1 1.3208 -0.4157 5.8706 46 1 3.5624 -0.9716 -0.0305 47 1 3.5332 -0.2130 -1.6417 48 1 5.7710 -1.1504 -1.1900 49 1 5.8822 -0.1995 0.3106 50 1 6.0933 2.9525 -1.4823 51 1 6.0718 2.2169 0.1386 52 1 3.7339 2.3187 -1.8226 53 1 3.8988 3.2834 -0.3353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717731768.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -72.549230 kcal Electronic energy + Delta-G solvation = -34091.023969 eV Core-core repulsion = 29964.915739 eV Total energy + Delta-G solvation = -4126.108229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.31421 -39.92785 -38.81650 -38.52952 -36.39915 -35.77317 -34.97105 -33.01659 -31.99717 -29.74983 -29.07241 -27.82851 -26.83589 -26.12134 -24.70171 -24.23325 -23.80869 -23.05851 -22.79260 -20.45914 -19.77719 -19.03129 -17.97269 -17.46367 -17.41880 -17.26130 -17.09581 -16.62943 -16.56871 -16.26565 -15.88280 -15.71616 -15.37566 -15.17451 -15.01694 -14.83075 -14.62159 -14.29746 -13.90968 -13.73750 -13.38035 -13.22980 -13.07269 -13.04945 -12.94102 -12.82253 -12.68126 -12.63940 -12.34915 -12.25278 -12.13431 -12.01598 -11.81271 -11.72707 -11.49449 -11.43662 -11.28058 -10.95100 -10.84679 -10.47387 -10.41621 -10.15536 -9.40860 -8.94840 -7.87150 -5.17595 1.45800 1.47293 1.55444 1.63412 2.06567 2.56505 2.83444 2.92371 3.03751 3.34510 3.43543 3.60271 3.68645 3.79834 3.90839 4.03328 4.07891 4.15098 4.16115 4.27307 4.31350 4.37866 4.43635 4.46159 4.47862 4.58330 4.66389 4.70589 4.71594 4.75826 4.79797 4.81699 4.85298 4.86752 4.94301 4.97614 5.02554 5.04995 5.07930 5.09847 5.16824 5.23648 5.31410 5.32114 5.49602 5.52080 5.75753 6.25564 6.29816 6.33884 6.53907 7.26796 7.37555 8.12672 8.37975 9.32981 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.005859 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.293885 B = 4778.225748 C = 6551.979843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.084 3.916 4 C -0.071 4.071 5 C 0.516 3.484 6 O -0.578 6.578 7 N -0.586 5.586 8 C 0.070 3.930 9 C 0.166 3.834 10 H 0.065 0.935 11 C 0.147 3.853 12 N -0.738 5.738 13 C -0.248 4.248 14 H 0.072 0.928 15 C -0.065 4.065 16 N -0.951 5.951 17 Si 0.967 3.033 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.274 1.274 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.169 4.169 24 C -0.131 4.131 25 C 0.061 3.939 26 O -0.401 6.401 27 C 0.044 3.956 28 C -0.117 4.117 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.037 0.963 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.034 0.966 50 H 0.105 0.895 51 H 0.044 0.956 52 H 0.102 0.898 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.002 6.871 -2.319 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.312 6.312 3 C 0.007 3.993 4 C -0.074 4.074 5 C 0.306 3.694 6 O -0.458 6.458 7 N -0.317 5.317 8 C -0.070 4.070 9 C 0.062 3.938 10 H 0.083 0.917 11 C 0.020 3.980 12 N -0.381 5.381 13 C -0.379 4.379 14 H 0.090 0.910 15 C -0.259 4.259 16 N -0.600 5.600 17 Si 0.797 3.203 18 H -0.213 1.213 19 H -0.227 1.227 20 H -0.199 1.199 21 C -0.180 4.180 22 C -0.207 4.207 23 C -0.206 4.206 24 C -0.168 4.168 25 C -0.015 4.015 26 O -0.320 6.320 27 C -0.033 4.033 28 C -0.155 4.155 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.135 0.865 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.123 0.877 51 H 0.063 0.937 52 H 0.121 0.879 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.315 6.932 -2.214 21.579 hybrid contribution 1.179 -0.487 0.293 1.309 sum -19.136 6.444 -1.921 20.283 Atomic orbital electron populations 1.22908 0.79778 1.03874 1.00878 1.88139 1.21113 1.26677 1.95233 1.22329 0.88976 0.85843 1.02173 1.20929 0.96744 0.98666 0.91091 1.20905 0.80762 0.79985 0.87795 1.90608 1.32730 1.40789 1.81711 1.47702 1.44945 1.32168 1.06838 1.22824 0.92336 0.89717 1.02135 1.20584 0.94920 0.97327 0.80962 0.91715 1.21212 0.89470 0.94735 0.92585 1.42479 1.35518 1.27799 1.32294 1.19510 1.08984 1.00626 1.08816 0.91001 1.25462 1.00734 1.01641 0.98052 1.69835 1.32687 1.39600 1.17906 0.85242 0.77693 0.79802 0.77548 1.21278 1.22745 1.19871 1.22412 0.98839 1.05748 0.90994 1.23023 1.02231 1.00172 0.95321 1.23184 1.02525 0.93099 1.01771 1.22414 0.94865 0.96543 1.02954 1.22546 0.94056 0.88719 0.96220 1.87803 1.78217 1.14808 1.51165 1.22877 0.95785 0.85322 0.99289 1.22000 0.95549 0.97247 1.00709 0.92943 0.88526 0.93299 0.92591 0.89636 0.89669 0.88196 0.92951 0.96199 0.94553 0.79404 0.94428 0.86500 0.90030 0.86517 0.89228 0.86496 0.88143 0.88435 0.90275 0.94728 0.87669 0.93748 0.87932 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.45 113.37 1.19 1.43 16 2 O -0.39 -7.24 5.25 -148.98 -0.78 -8.02 16 3 C 0.08 1.63 4.70 71.98 0.34 1.97 16 4 C -0.07 -2.00 0.50 -52.81 -0.03 -2.03 16 5 C 0.52 18.64 4.70 87.66 0.41 19.05 16 6 O -0.58 -25.50 13.00 -3.05 -0.04 -25.54 16 7 N -0.59 -19.61 2.24 -822.59 -1.84 -21.45 16 8 C 0.07 1.96 7.63 127.77 0.97 2.93 16 9 C 0.17 5.90 2.55 44.99 0.11 6.02 16 10 H 0.06 2.77 6.91 -2.38 -0.02 2.75 16 11 C 0.15 6.08 4.10 86.38 0.35 6.43 16 12 N -0.74 -38.90 5.43 -343.45 -1.87 -40.77 16 13 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 14 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 16 N -0.95 -59.08 13.06 21.65 0.28 -58.80 16 17 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.16 -4.14 5.48 -10.77 -0.06 -4.20 16 22 C -0.17 -3.88 10.00 30.60 0.31 -3.58 16 23 C -0.17 -3.76 9.50 30.62 0.29 -3.47 16 24 C -0.13 -4.07 4.04 30.75 0.12 -3.95 16 25 C 0.06 2.54 6.62 72.08 0.48 3.01 16 26 O -0.40 -16.16 10.77 -148.98 -1.60 -17.77 16 27 C 0.04 1.53 6.55 72.01 0.47 2.00 16 28 C -0.12 -3.14 4.41 30.69 0.14 -3.00 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.47 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 1.07 7.76 -2.39 -0.02 1.05 16 33 H 0.09 1.25 7.73 -2.39 -0.02 1.24 16 34 H 0.09 1.84 5.89 -2.39 -0.01 1.83 16 35 H 0.10 2.92 2.48 -2.39 -0.01 2.92 16 36 H 0.05 1.57 6.53 -2.39 -0.02 1.55 16 37 H 0.02 0.85 7.59 -2.39 -0.02 0.83 16 38 H 0.04 1.44 5.60 -2.39 -0.01 1.43 16 39 H 0.37 21.59 6.49 -92.71 -0.60 20.98 16 40 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 42 H 0.08 2.12 7.98 -2.39 -0.02 2.11 16 43 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.09 2.32 5.81 -2.39 -0.01 2.31 16 45 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 46 H 0.10 3.23 4.30 -2.38 -0.01 3.22 16 47 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 48 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.03 1.78 6.81 -2.39 -0.02 1.76 16 50 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 51 H 0.04 1.94 5.60 -2.39 -0.01 1.92 16 52 H 0.10 2.16 8.06 -2.39 -0.02 2.14 16 53 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -73.21 390.43 2.90 -70.31 By element: Atomic # 1 Polarization: 46.34 SS G_CDS: 0.32 Total: 46.66 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.41 Total: 6.01 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.42 Total: -121.02 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.43 Total: -51.33 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -73.21 2.90 -70.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717731768.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.238 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds