Wall clock time and date at job start Sat Apr 11 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00050 * 2 1 4 4 C 1.52998 * 109.46935 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.47344 * 64.99714 * 4 3 2 6 6 C 1.42898 * 113.99723 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46633 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46781 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00183 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99936 * 179.97438 * 8 7 6 11 11 C 1.48235 * 125.78205 * 0.02678 * 10 8 7 12 12 C 1.52328 * 105.86612 * 176.81883 * 11 10 8 13 13 H 1.09004 * 109.88614 * 272.31689 * 12 11 10 14 14 C 1.51446 * 117.44596 * 145.79367 * 12 11 10 15 15 C 1.53844 * 107.04040 * 181.23658 * 14 12 11 16 16 C 1.52525 * 111.66742 * 57.19330 * 15 14 12 17 17 C 1.53822 * 111.70248 * 305.96395 * 16 15 14 18 18 H 1.08990 * 109.94157 * 176.90893 * 17 16 15 19 19 N 1.46497 * 109.94110 * 298.07062 * 17 16 15 20 20 C 1.36935 * 119.99719 * 208.94587 * 19 17 16 21 21 H 1.08002 * 120.00307 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00170 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99910 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00284 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47058 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47244 * 120.00146 * 24 22 20 27 27 H 1.48491 * 109.47619 * 240.00326 * 24 22 20 28 28 C 1.51298 * 107.43574 * 57.28305 * 17 16 15 29 29 H 1.09000 * 109.97892 * 55.69951 * 28 17 16 30 30 C 1.48658 * 125.78543 * 179.71215 * 10 8 7 31 31 H 1.09009 * 109.46656 * 300.00070 * 1 2 3 32 32 H 1.09004 * 109.47395 * 59.99224 * 1 2 3 33 33 H 1.08998 * 109.47668 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.46837 * 59.99983 * 3 2 1 35 35 H 1.09006 * 109.46845 * 299.99844 * 3 2 1 36 36 H 1.08996 * 109.46992 * 305.00007 * 4 3 2 37 37 H 1.09000 * 109.46761 * 184.99996 * 4 3 2 38 38 H 1.08998 * 109.47252 * 300.00145 * 6 5 4 39 39 H 1.08997 * 109.47214 * 60.00708 * 6 5 4 40 40 H 1.09006 * 109.47044 * 299.99630 * 7 6 5 41 41 H 1.08989 * 109.47120 * 59.99999 * 7 6 5 42 42 H 1.09004 * 110.17555 * 295.91777 * 11 10 8 43 43 H 1.09006 * 110.17714 * 57.64660 * 11 10 8 44 44 H 1.09000 * 109.93719 * 300.61467 * 14 12 11 45 45 H 1.09001 * 109.94330 * 61.85567 * 14 12 11 46 46 H 1.09002 * 109.04222 * 177.75983 * 15 14 12 47 47 H 1.09002 * 109.04266 * 296.70556 * 15 14 12 48 48 H 1.09004 * 109.03246 * 66.53458 * 16 15 14 49 49 H 1.08994 * 109.03455 * 185.46394 * 16 15 14 50 50 H 0.96996 * 120.00574 * 28.94210 * 19 17 16 51 51 H 0.96999 * 119.99977 * 179.97438 * 23 22 20 52 52 H 1.09001 * 110.62826 * 274.10879 * 30 10 8 53 53 H 1.09004 * 110.62374 * 37.13159 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4200 -1.3250 7 6 5.7246 -0.2332 -2.6653 8 6 7.2182 -0.4020 -2.7737 9 8 7.9372 -0.0355 -1.8684 10 7 7.7550 -0.9603 -3.8767 11 6 7.0005 -1.4509 -5.0546 12 6 8.0493 -1.9134 -6.0579 13 1 8.3594 -1.0758 -6.6828 14 6 7.7061 -3.1049 -6.9274 15 6 8.9302 -3.3812 -7.8173 16 6 10.1863 -3.6253 -6.9872 17 6 10.4476 -2.4755 -5.9993 18 1 11.3180 -2.7042 -5.3846 19 7 10.6684 -1.2269 -6.7330 20 6 11.4651 -0.2501 -6.1979 21 1 11.9311 -0.4005 -5.2353 22 6 11.6748 0.9328 -6.8933 23 7 11.1074 1.1159 -8.0667 24 14 12.7611 2.2655 -6.1631 25 1 13.2753 1.8174 -4.8440 26 1 13.9028 2.5287 -7.0755 27 1 11.9693 3.5097 -5.9894 28 6 9.2197 -2.3407 -5.1256 29 1 8.9997 -3.2929 -4.6430 30 6 9.2044 -1.1825 -4.1211 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6886 1.8463 0.8899 35 1 1.6886 1.8464 -0.8901 36 1 3.8514 0.5682 0.8409 37 1 3.9785 2.1765 0.0889 38 1 5.8622 1.3962 -1.2631 39 1 5.7358 -0.2121 -0.5109 40 1 5.2436 -1.2094 -2.7275 41 1 5.3701 0.3991 -3.4791 42 1 6.3595 -2.2852 -4.7697 43 1 6.4016 -0.6454 -5.4797 44 1 7.4972 -3.9732 -6.3025 45 1 6.8398 -2.8751 -7.5479 46 1 8.7328 -4.2603 -8.4307 47 1 9.0971 -2.5234 -8.4690 48 1 10.0684 -4.5539 -6.4288 49 1 11.0417 -3.7192 -7.6561 50 1 10.2503 -1.0920 -7.5978 51 1 11.2536 1.9427 -8.5524 52 1 9.6623 -0.2917 -4.5511 53 1 9.7099 -1.4682 -3.1986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717845089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:28 Heat of formation + Delta-G solvation = -139.747613 kcal Electronic energy + Delta-G solvation = -30655.128102 eV Core-core repulsion = 26526.105932 eV Total energy + Delta-G solvation = -4129.022170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58046 -40.10564 -39.32290 -38.13902 -36.83427 -35.34738 -33.33795 -33.02883 -31.63365 -30.74636 -30.26997 -28.21647 -27.13894 -26.24026 -25.35296 -23.91370 -23.52179 -22.13922 -21.98424 -20.26665 -20.02735 -19.09212 -18.44637 -17.86121 -17.45621 -17.17824 -16.84352 -16.61925 -16.32302 -16.15594 -15.94686 -15.83371 -15.62443 -15.35428 -15.03995 -14.62607 -14.40945 -14.17802 -14.02722 -13.67938 -13.53583 -13.22687 -13.18437 -13.08562 -12.88743 -12.69987 -12.64033 -12.60784 -12.47368 -12.36476 -12.16922 -12.10949 -11.97648 -11.78895 -11.60482 -11.34246 -11.09668 -10.96809 -10.87921 -10.67492 -10.61015 -10.55922 -9.62750 -8.92579 -7.91944 -5.15272 1.41818 1.45038 1.51841 1.57120 1.83342 2.55775 2.69248 2.86920 3.39881 3.45784 3.65803 3.82902 3.88479 3.97952 3.99046 4.13055 4.14486 4.22433 4.31192 4.40790 4.43566 4.44428 4.46024 4.52669 4.54983 4.58105 4.60805 4.67090 4.68154 4.70273 4.74447 4.76917 4.80710 4.83447 4.88430 4.89343 4.97269 5.12019 5.14237 5.20511 5.29776 5.42884 5.46775 5.51836 5.58378 5.60271 5.79014 6.10010 6.26818 6.32034 6.55923 7.08793 7.39769 8.17972 8.41084 9.31269 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.002486 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.847978 B =11259.465720 C =12731.276977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.062 3.938 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.084 3.916 7 C -0.121 4.121 8 C 0.522 3.478 9 O -0.596 6.596 10 N -0.617 5.617 11 C 0.113 3.887 12 C -0.100 4.100 13 H 0.060 0.940 14 C -0.088 4.088 15 C -0.113 4.113 16 C -0.114 4.114 17 C 0.177 3.823 18 H 0.043 0.957 19 N -0.721 5.721 20 C -0.216 4.216 21 H 0.067 0.933 22 C -0.071 4.071 23 N -0.963 5.963 24 Si 0.950 3.050 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.301 1.301 28 C -0.109 4.109 29 H 0.093 0.907 30 C 0.119 3.881 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.037 0.963 48 H 0.085 0.915 49 H 0.050 0.950 50 H 0.377 0.623 51 H 0.247 0.753 52 H 0.057 0.943 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.917 -7.900 10.694 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.315 6.315 6 C 0.007 3.993 7 C -0.160 4.160 8 C 0.312 3.688 9 O -0.478 6.478 10 N -0.350 5.350 11 C -0.008 4.008 12 C -0.119 4.119 13 H 0.078 0.922 14 C -0.125 4.125 15 C -0.150 4.150 16 C -0.152 4.152 17 C 0.068 3.932 18 H 0.061 0.939 19 N -0.362 5.362 20 C -0.348 4.348 21 H 0.085 0.915 22 C -0.263 4.263 23 N -0.615 5.615 24 Si 0.782 3.218 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.229 1.229 28 C -0.130 4.130 29 H 0.111 0.889 30 C -0.003 4.003 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.211 0.789 51 H 0.056 0.944 52 H 0.075 0.925 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.468 -7.828 11.198 24.610 hybrid contribution 1.077 1.800 0.095 2.100 sum -19.391 -6.028 11.293 23.235 Atomic orbital electron populations 1.22913 0.79541 1.03704 1.00890 1.87919 1.21439 1.28576 1.95620 1.22686 0.91415 0.85096 1.02208 1.22753 0.94257 0.98372 0.86746 1.87834 1.21650 1.82627 1.39434 1.21988 0.81040 0.99691 0.96580 1.21356 0.89905 1.05230 0.99523 1.20662 0.91295 0.76342 0.80466 1.90668 1.64451 1.52323 1.40320 1.49312 1.08459 1.59564 1.17629 1.21934 0.94394 0.99829 0.84652 1.21763 0.94499 0.99448 0.96181 0.92159 1.21232 0.97573 0.96274 0.97470 1.21451 0.94282 1.01327 0.97959 1.21725 0.97913 0.97644 0.97943 1.20149 0.94167 0.86508 0.92386 0.93927 1.42559 1.57111 1.14601 1.21907 1.19474 1.19526 0.95004 1.00840 0.91491 1.25255 1.03085 1.00326 0.97671 1.69769 1.50013 1.26572 1.15132 0.85399 0.78611 0.80091 0.77736 1.19866 1.22108 1.22892 1.22601 0.98686 0.96553 0.95191 0.88914 1.21958 0.80935 0.99544 0.97904 0.92686 0.93413 0.88951 0.89257 0.92110 0.92444 0.90075 0.93359 0.93112 0.86045 0.86957 0.88220 0.90673 0.89639 0.90414 0.90092 0.94457 0.89651 0.93120 0.78926 0.94371 0.92467 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.10 10.67 -144.34 -1.54 -9.64 16 3 C 0.06 0.94 6.32 71.98 0.45 1.39 16 4 C 0.05 0.99 6.32 71.98 0.45 1.44 16 5 O -0.40 -9.38 10.31 -144.34 -1.49 -10.87 16 6 C 0.08 2.09 5.23 71.98 0.38 2.47 16 7 C -0.12 -2.90 5.28 29.85 0.16 -2.74 16 8 C 0.52 17.30 7.86 87.66 0.69 17.99 16 9 O -0.60 -24.65 16.27 -3.03 -0.05 -24.69 16 10 N -0.62 -20.06 3.38 -812.38 -2.75 -22.81 16 11 C 0.11 2.85 6.23 85.82 0.53 3.38 16 12 C -0.10 -2.86 2.20 -10.62 -0.02 -2.88 16 13 H 0.06 2.30 6.59 -2.39 -0.02 2.28 16 14 C -0.09 -1.90 5.72 30.37 0.17 -1.72 16 15 C -0.11 -2.84 5.58 30.72 0.17 -2.67 16 16 C -0.11 -3.19 5.53 30.71 0.17 -3.02 16 17 C 0.18 6.34 3.01 44.71 0.13 6.47 16 18 H 0.04 1.61 8.05 -2.39 -0.02 1.59 16 19 N -0.72 -33.39 3.83 -324.29 -1.24 -34.63 16 20 C -0.22 -11.56 8.07 84.03 0.68 -10.88 16 21 H 0.07 3.58 7.83 -2.91 -0.02 3.55 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 23 N -0.96 -57.76 13.06 21.65 0.28 -57.48 16 24 Si 0.95 47.31 29.55 68.60 2.03 49.34 16 25 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 28 C -0.11 -3.42 2.35 -10.34 -0.02 -3.45 16 29 H 0.09 2.47 8.04 -2.39 -0.02 2.45 16 30 C 0.12 4.51 6.43 86.07 0.55 5.06 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.10 1.84 8.08 -2.38 -0.02 1.82 16 43 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.09 1.46 8.06 -2.39 -0.02 1.45 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.04 1.17 7.03 -2.39 -0.02 1.16 16 48 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.38 18.78 5.97 -92.71 -0.55 18.23 16 51 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 52 H 0.06 2.70 6.15 -2.39 -0.01 2.68 16 53 H 0.05 2.06 8.07 -2.39 -0.02 2.04 16 Total: -1.00 -72.29 413.40 1.78 -70.51 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.32 Total: 31.45 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.22 Total: 8.82 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.71 Total: -114.92 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -3.08 Total: -45.20 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -72.29 1.78 -70.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717845089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.239 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds