Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99799 * 2 1 4 4 C 1.53000 * 109.47144 * 269.99824 * 3 2 1 5 5 O 1.42903 * 109.47115 * 65.00089 * 4 3 2 6 6 C 1.42897 * 113.99992 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46927 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47253 * 64.99791 * 7 6 5 9 9 C 1.36929 * 120.00014 * 179.97438 * 8 7 6 10 10 H 1.08008 * 120.00354 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00136 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99856 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00199 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47472 * 89.99962 * 13 11 9 15 15 H 1.48502 * 109.47499 * 210.00212 * 13 11 9 16 16 H 1.48503 * 109.47100 * 330.00079 * 13 11 9 17 17 C 1.34777 * 120.00178 * 179.97438 * 2 1 3 18 18 O 1.21282 * 120.00020 * 186.53440 * 17 2 1 19 19 C 1.50697 * 120.00150 * 6.53222 * 17 2 1 20 20 C 1.52915 * 111.40145 * 295.07729 * 19 17 2 21 21 C 1.55073 * 102.92458 * 269.19510 * 20 19 17 22 22 O 1.45034 * 107.08749 * 358.10403 * 21 20 19 23 23 C 1.42317 * 105.23484 * 332.99958 * 22 21 20 24 24 H 1.08997 * 109.68612 * 288.16691 * 23 22 21 25 25 C 1.51477 * 117.60239 * 161.95179 * 23 22 21 26 26 C 1.53765 * 107.34711 * 180.76824 * 25 23 22 27 27 C 1.52581 * 111.40327 * 57.44753 * 26 25 23 28 28 C 1.51858 * 110.76498 * 65.02287 * 19 17 2 29 29 H 1.09003 * 109.47051 * 275.58252 * 1 2 3 30 30 H 1.09003 * 109.46951 * 35.58902 * 1 2 3 31 31 H 1.08999 * 109.46938 * 155.58871 * 1 2 3 32 32 H 1.08996 * 109.47216 * 29.99878 * 3 2 1 33 33 H 1.08998 * 109.46952 * 149.99944 * 3 2 1 34 34 H 1.09003 * 109.47474 * 185.00064 * 4 3 2 35 35 H 1.09004 * 109.47040 * 305.00197 * 4 3 2 36 36 H 1.09000 * 109.47089 * 299.99516 * 6 5 4 37 37 H 1.08997 * 109.47318 * 59.99653 * 6 5 4 38 38 H 1.09005 * 109.47316 * 184.99685 * 7 6 5 39 39 H 1.09001 * 109.47053 * 304.99756 * 7 6 5 40 40 H 0.96995 * 119.99538 * 0.02562 * 8 7 6 41 41 H 0.96997 * 120.00281 * 179.97438 * 12 11 9 42 42 H 1.09006 * 110.97197 * 150.75258 * 20 19 17 43 43 H 1.09004 * 110.71127 * 27.51509 * 20 19 17 44 44 H 1.08998 * 109.91308 * 238.74089 * 21 20 19 45 45 H 1.09003 * 109.91024 * 117.46523 * 21 20 19 46 46 H 1.09007 * 109.88146 * 61.31546 * 25 23 22 47 47 H 1.08997 * 109.88909 * 300.23191 * 25 23 22 48 48 H 1.09004 * 109.09606 * 296.95164 * 26 25 23 49 49 H 1.09004 * 109.09480 * 177.94208 * 26 25 23 50 50 H 1.09001 * 109.07806 * 184.74593 * 27 26 25 51 51 H 1.08999 * 109.07553 * 65.77409 * 27 26 25 52 52 H 1.08998 * 109.89445 * 296.88930 * 28 19 17 53 53 H 1.09005 * 109.89278 * 175.85258 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0814 6 6 1.3324 2.4164 -3.4405 7 6 -0.0566 2.6907 -4.0205 8 7 -0.6647 3.8229 -3.3172 9 6 -1.9165 4.2538 -3.6670 10 1 -2.4555 3.7593 -4.4616 11 6 -2.4928 5.3263 -3.0003 12 7 -1.8358 5.9294 -2.0322 13 14 -4.2007 5.9137 -3.4769 14 1 -5.2163 5.1882 -2.6722 15 1 -4.3132 7.3716 -3.2177 16 1 -4.4307 5.6484 -4.9198 17 6 2.1389 -1.1672 0.0005 18 8 3.3458 -1.1705 0.1201 19 6 1.3928 -2.4681 -0.1474 20 6 0.4687 -2.7200 1.0446 21 6 1.3713 -3.5181 2.0208 22 8 2.6496 -3.7062 1.3620 23 6 2.3599 -3.6790 -0.0311 24 1 1.8381 -4.5927 -0.3155 25 6 3.5122 -3.4321 -0.9829 26 6 2.9369 -3.4314 -2.4089 27 6 1.8408 -2.3818 -2.5666 28 6 0.7355 -2.5596 -1.5133 29 1 -0.3633 0.1000 1.0228 30 1 -0.3633 0.8357 -0.5981 31 1 -0.3633 -0.9358 -0.4247 32 1 1.6084 2.0284 0.5138 33 1 3.1498 1.1384 0.5138 34 1 3.0732 2.6064 -1.4439 35 1 2.9642 0.9131 -1.9815 36 1 1.9299 3.3269 -3.4837 37 1 1.8207 1.6335 -4.0207 38 1 0.0325 2.9271 -5.0809 39 1 -0.6830 1.8072 -3.8966 40 1 -0.1801 4.2677 -2.6044 41 1 -2.2383 6.6790 -1.5666 42 1 -0.3971 -3.3125 0.7486 43 1 0.1537 -1.7781 1.4939 44 1 0.9192 -4.4860 2.2372 45 1 1.5087 -2.9549 2.9439 46 1 4.2526 -4.2258 -0.8823 47 1 3.9706 -2.4669 -0.7677 48 1 2.5220 -4.4157 -2.6265 49 1 3.7383 -3.2192 -3.1166 50 1 1.4030 -2.4705 -3.5609 51 1 2.2794 -1.3898 -2.4589 52 1 -0.0090 -1.7707 -1.6201 53 1 0.2626 -3.5344 -1.6328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718008491.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -115.273663 kcal Electronic energy + Delta-G solvation = -32475.807519 eV Core-core repulsion = 28347.846619 eV Total energy + Delta-G solvation = -4127.960900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.73983 -39.81569 -38.86039 -37.18738 -36.90286 -36.21259 -33.97376 -33.27434 -31.08481 -30.71732 -29.70783 -29.23169 -27.59547 -25.53105 -24.99741 -23.97905 -23.08665 -22.79989 -22.48958 -21.64717 -19.94815 -19.22326 -17.93343 -17.63081 -17.26836 -17.20877 -16.88587 -16.81181 -16.34909 -16.24293 -15.96665 -15.50382 -15.35403 -14.97875 -14.93007 -14.59011 -14.51085 -14.48228 -14.19573 -14.13970 -13.59251 -13.32776 -13.21281 -13.08572 -12.88042 -12.84850 -12.74810 -12.66264 -12.47099 -12.40692 -12.18355 -12.09888 -11.93862 -11.89160 -11.70006 -11.64121 -11.50563 -10.94469 -10.93267 -10.61603 -10.52702 -10.12430 -9.60621 -8.95925 -7.90840 -5.19307 1.49575 1.51206 1.59254 1.59583 1.97369 2.58915 2.73755 2.77110 3.33439 3.43139 3.48237 3.68968 3.86443 3.91719 3.96800 4.01921 4.05667 4.15211 4.18421 4.24220 4.28577 4.33733 4.36900 4.43244 4.46439 4.47040 4.51218 4.53545 4.62337 4.65432 4.74681 4.76322 4.80364 4.83907 4.88255 4.95888 4.99057 5.01370 5.07026 5.15027 5.15978 5.19157 5.26365 5.32114 5.45693 5.51658 5.67472 5.97623 6.27592 6.31862 6.46266 7.20866 7.37317 8.13361 8.37597 9.32711 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002745 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.290091 B =10198.308076 C =10481.611872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.118 3.882 4 C 0.051 3.949 5 O -0.386 6.386 6 C 0.067 3.933 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.973 3.027 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.269 1.269 17 C 0.533 3.467 18 O -0.558 6.558 19 C -0.113 4.113 20 C -0.145 4.145 21 C 0.038 3.962 22 O -0.392 6.392 23 C 0.100 3.900 24 H 0.084 0.916 25 C -0.154 4.154 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.026 0.974 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.035 0.965 52 H 0.083 0.917 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -22.740 3.720 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.333 5.333 3 C -0.005 4.005 4 C -0.027 4.027 5 O -0.306 6.306 6 C -0.010 4.010 7 C 0.027 3.973 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.213 1.213 15 H -0.224 1.224 16 H -0.194 1.194 17 C 0.323 3.677 18 O -0.437 6.437 19 C -0.117 4.117 20 C -0.183 4.183 21 C -0.038 4.038 22 O -0.311 6.311 23 C 0.042 3.958 24 H 0.101 0.899 25 C -0.191 4.191 26 C -0.143 4.143 27 C -0.160 4.160 28 C -0.143 4.143 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.054 0.946 52 H 0.101 0.899 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.301 -22.789 3.855 24.238 hybrid contribution -0.416 1.138 0.018 1.212 sum 6.885 -21.651 3.874 23.047 Atomic orbital electron populations 1.22307 0.78155 1.04754 1.02347 1.47758 1.07891 1.05130 1.72514 1.21490 0.98558 0.85354 0.95064 1.22900 0.86617 0.99201 0.93998 1.87977 1.29316 1.87554 1.25723 1.22632 0.97109 0.98335 0.82896 1.20839 0.91834 0.89985 0.94643 1.42485 1.17288 1.36115 1.42422 1.19645 0.93578 1.10446 1.13860 0.90594 1.25550 1.02465 0.99563 0.99187 1.69832 1.39406 1.25526 1.27204 0.85151 0.79952 0.76660 0.78062 1.21322 1.22412 1.19398 1.20525 0.87191 0.85412 0.74569 1.90431 1.15753 1.86707 1.50854 1.21969 0.98026 0.93217 0.98479 1.22968 0.98716 1.02667 0.93917 1.23774 0.83222 1.00604 0.96222 1.88804 1.30009 1.93875 1.18426 1.22485 0.95709 0.95236 0.82407 0.89879 1.22156 0.97622 1.05449 0.93857 1.21432 0.98007 0.99756 0.95129 1.21582 0.96132 0.98450 0.99854 1.21721 0.97684 1.04722 0.90131 0.91530 0.91671 0.88205 0.89486 0.88577 0.91989 0.93720 0.93808 0.91081 0.94160 0.95594 0.79323 0.94136 0.86348 0.89464 0.89589 0.90125 0.92039 0.88147 0.90390 0.91525 0.90085 0.94623 0.89856 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 8.53 127.77 1.09 2.53 16 2 N -0.60 -14.80 2.84 -846.76 -2.40 -17.20 16 3 C 0.12 3.08 5.89 86.38 0.51 3.59 16 4 C 0.05 1.39 6.28 71.98 0.45 1.84 16 5 O -0.39 -12.79 9.03 -148.98 -1.35 -14.14 16 6 C 0.07 2.15 6.07 71.98 0.44 2.59 16 7 C 0.15 6.03 6.65 86.38 0.57 6.60 16 8 N -0.74 -37.71 5.55 -343.43 -1.91 -39.62 16 9 C -0.24 -13.53 9.99 84.04 0.84 -12.69 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 12 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 13 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 15 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.53 13.58 4.60 87.66 0.40 13.99 16 18 O -0.56 -17.78 12.42 -1.51 -0.02 -17.80 16 19 C -0.11 -2.14 0.16 -52.51 -0.01 -2.15 16 20 C -0.15 -2.08 5.24 31.28 0.16 -1.92 16 21 C 0.04 0.64 7.71 72.69 0.56 1.20 16 22 O -0.39 -9.72 11.16 -147.46 -1.65 -11.37 16 23 C 0.10 2.06 2.37 30.92 0.07 2.13 16 24 H 0.08 1.35 7.95 -2.39 -0.02 1.33 16 25 C -0.15 -3.45 5.71 30.35 0.17 -3.28 16 26 C -0.11 -1.83 5.85 30.71 0.18 -1.65 16 27 C -0.12 -2.23 5.58 30.69 0.17 -2.06 16 28 C -0.11 -1.65 4.83 30.46 0.15 -1.50 16 29 H 0.07 1.25 7.49 -2.39 -0.02 1.24 16 30 H 0.06 1.82 7.03 -2.39 -0.02 1.81 16 31 H 0.10 1.74 3.48 -2.39 -0.01 1.73 16 32 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.10 2.49 7.34 -2.39 -0.02 2.47 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.12 1.02 8.04 -2.38 -0.02 1.00 16 43 H 0.09 1.28 5.71 -2.38 -0.01 1.27 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.10 2.94 4.46 -39.39 -0.18 2.76 16 48 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 50 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.03 0.84 7.09 -2.39 -0.02 0.82 16 52 H 0.08 1.36 5.42 -2.39 -0.01 1.34 16 53 H 0.10 1.10 8.01 -2.38 -0.02 1.09 16 Total: -1.00 -71.61 397.48 1.25 -70.36 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.03 Total: 35.69 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.23 Total: 5.38 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -4.03 Total: -115.83 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -3.01 Total: -43.31 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.61 1.25 -70.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718008491.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.910 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds