Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 113.99957 * 2 1 4 4 C 1.52999 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46964 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47093 * 179.97438 * 5 4 3 7 7 C 1.42901 * 114.00450 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47359 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47116 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99914 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00155 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00068 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.32368 * 35.35788 * 12 11 9 14 14 C 1.53033 * 109.32451 * 155.00337 * 12 11 9 15 15 C 1.53970 * 108.83057 * 175.50158 * 14 12 11 16 16 H 1.08997 * 112.99427 * 169.00941 * 15 14 12 17 17 C 1.55429 * 106.41057 * 293.82367 * 15 14 12 18 18 C 1.55172 * 100.35775 * 74.23929 * 17 15 14 19 19 H 1.08999 * 112.48739 * 162.66397 * 18 17 15 20 20 C 1.53880 * 107.25893 * 286.72181 * 18 17 15 21 21 N 1.47791 * 104.25035 * 40.54316 * 18 17 15 22 22 C 1.36945 * 125.85162 * 153.54392 * 21 18 17 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 18 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 18 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 C 1.47078 * 108.29372 * 333.80724 * 21 18 17 31 31 H 1.09001 * 109.47583 * 60.00351 * 1 2 3 32 32 H 1.09006 * 109.46968 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47543 * 299.99810 * 1 2 3 34 34 H 1.08997 * 109.47184 * 59.99543 * 3 2 1 35 35 H 1.09002 * 109.47346 * 299.99596 * 3 2 1 36 36 H 1.08997 * 109.47111 * 60.00019 * 4 3 2 37 37 H 1.08999 * 109.46975 * 299.99694 * 4 3 2 38 38 H 1.08997 * 109.47330 * 59.99982 * 5 4 3 39 39 H 1.09002 * 109.47334 * 299.99337 * 5 4 3 40 40 H 1.09001 * 109.46865 * 59.99840 * 7 6 5 41 41 H 1.09003 * 109.46892 * 300.00429 * 7 6 5 42 42 H 1.09001 * 109.47359 * 60.00025 * 8 7 6 43 43 H 1.09006 * 109.46976 * 300.00332 * 8 7 6 44 44 H 0.96996 * 119.99734 * 0.02562 * 11 9 8 45 45 H 1.08995 * 109.57538 * 55.69307 * 14 12 11 46 46 H 1.08995 * 109.68102 * 295.36883 * 14 12 11 47 47 H 1.08999 * 111.23841 * 316.45396 * 17 15 14 48 48 H 1.09006 * 111.23262 * 192.01045 * 17 15 14 49 49 H 1.08998 * 109.53309 * 185.71312 * 20 18 17 50 50 H 1.08997 * 109.53676 * 305.94165 * 20 18 17 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 52 52 H 1.09000 * 109.97515 * 120.19260 * 30 21 18 53 53 H 1.09001 * 109.97644 * 241.47965 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5824 0.0000 6 8 5.5822 2.4696 0.0000 7 6 6.2647 3.7251 0.0000 8 6 7.7756 3.4843 -0.0006 9 6 8.4953 4.8082 0.0000 10 8 7.8621 5.8427 0.0004 11 7 9.8426 4.8429 0.0001 12 6 10.5423 6.1300 0.0002 13 1 9.9775 6.8476 0.5953 14 6 11.9340 5.9499 0.6105 15 6 12.7004 7.2809 0.5020 16 1 13.6235 7.2892 1.0814 17 6 12.9274 7.5346 -1.0146 18 6 11.4967 7.9543 -1.4445 19 1 11.4838 8.4658 -2.4069 20 6 10.6288 6.6836 -1.4447 21 7 11.0233 8.8158 -0.3409 22 6 10.0873 9.8101 -0.4444 23 1 9.6264 10.0205 -1.3981 24 6 9.7312 10.5475 0.6764 25 7 10.2934 10.2914 1.8386 26 14 8.4551 11.9043 0.5350 27 1 9.1300 13.1870 0.2120 28 1 7.4913 11.5669 -0.5432 29 1 7.7294 12.0376 1.8237 30 6 11.7343 8.4264 0.8864 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8566 0.6439 -0.8908 37 1 3.8573 0.6436 0.8891 38 1 3.8363 3.1228 0.8904 39 1 3.8357 3.1239 -0.8896 40 1 5.9868 4.2897 0.8900 41 1 5.9867 4.2898 -0.8900 42 1 8.0532 2.9198 -0.8909 43 1 8.0539 2.9194 0.8891 44 1 10.3490 4.0156 -0.0006 45 1 12.4728 5.1729 0.0683 46 1 11.8412 5.6663 1.6588 47 1 13.2417 6.6239 -1.5245 48 1 13.6413 8.3421 -1.1773 49 1 9.6400 6.9178 -1.8391 50 1 11.0989 5.9212 -2.0658 51 1 10.0448 10.8069 2.6217 52 1 12.2961 9.2751 1.2764 53 1 11.0226 8.0753 1.6336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724506105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -134.152848 kcal Electronic energy + Delta-G solvation = -30086.516902 eV Core-core repulsion = 25957.737339 eV Total energy + Delta-G solvation = -4128.779563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45972 -40.23420 -39.29314 -38.60295 -36.07663 -34.68964 -34.21596 -32.50869 -32.26050 -31.05361 -29.69120 -27.95196 -27.20593 -25.90009 -24.96321 -24.74828 -22.88202 -22.50920 -21.41579 -21.08949 -20.05585 -18.92098 -18.46423 -17.70875 -17.51718 -17.36860 -16.96155 -16.84423 -16.52260 -16.13633 -15.97167 -15.69191 -15.50415 -15.28372 -14.91817 -14.76640 -14.29622 -14.12815 -13.81200 -13.63951 -13.45780 -13.30181 -13.22649 -13.00853 -12.87729 -12.67377 -12.63540 -12.60484 -12.50211 -12.29412 -12.11980 -11.95487 -11.94772 -11.89510 -11.62664 -11.40054 -11.14869 -11.01242 -10.74374 -10.67694 -10.67381 -10.66176 -9.93033 -8.81997 -7.82879 -5.14318 1.38481 1.41728 1.49257 1.68722 1.95329 2.48400 2.54086 3.16219 3.35326 3.66542 3.73457 3.81090 3.88768 3.93717 4.02699 4.07228 4.08243 4.15268 4.29240 4.36284 4.40008 4.41003 4.42238 4.49503 4.52907 4.53532 4.56464 4.60038 4.67844 4.69818 4.76764 4.80963 4.81859 4.84478 4.85310 5.06186 5.10095 5.11788 5.20946 5.31164 5.35510 5.43840 5.49827 5.51261 5.68039 5.76981 5.85508 6.07904 6.19121 6.24083 6.66725 7.14894 7.40019 7.83731 8.47673 9.27142 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.002099 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.783204 B =13338.081778 C =14989.107616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.063 3.937 4 C -0.111 4.111 5 C 0.062 3.938 6 O -0.395 6.395 7 C 0.081 3.919 8 C -0.123 4.123 9 C 0.504 3.496 10 O -0.591 6.591 11 N -0.708 5.708 12 C 0.150 3.850 13 H 0.041 0.959 14 C -0.098 4.098 15 C -0.108 4.108 16 H 0.108 0.892 17 C -0.110 4.110 18 C 0.139 3.861 19 H 0.060 0.940 20 C -0.120 4.120 21 N -0.615 5.615 22 C -0.226 4.226 23 H 0.071 0.929 24 C -0.069 4.069 25 N -0.949 5.949 26 Si 0.968 3.032 27 H -0.281 1.281 28 H -0.278 1.278 29 H -0.297 1.297 30 C 0.191 3.809 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.418 0.582 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.021 0.979 50 H 0.084 0.916 51 H 0.243 0.757 52 H 0.000 1.000 53 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -23.289 -4.956 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.148 4.148 5 C -0.015 4.015 6 O -0.315 6.315 7 C 0.004 3.996 8 C -0.162 4.162 9 C 0.291 3.709 10 O -0.471 6.471 11 N -0.360 5.360 12 C 0.045 3.955 13 H 0.059 0.941 14 C -0.135 4.135 15 C -0.128 4.128 16 H 0.126 0.874 17 C -0.148 4.148 18 C 0.032 3.968 19 H 0.078 0.922 20 C -0.161 4.161 21 N -0.339 5.339 22 C -0.356 4.356 23 H 0.089 0.911 24 C -0.262 4.262 25 N -0.599 5.599 26 Si 0.797 3.203 27 H -0.208 1.208 28 H -0.203 1.203 29 H -0.223 1.223 30 C 0.066 3.934 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.255 0.745 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.102 0.898 51 H 0.052 0.948 52 H 0.019 0.981 53 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -6.729 -22.755 -4.825 24.215 hybrid contribution -1.307 1.696 0.372 2.173 sum -8.036 -21.059 -4.453 22.976 Atomic orbital electron populations 1.22941 0.79270 1.03944 1.00944 1.87816 1.21638 1.28558 1.95650 1.22404 0.92804 0.84671 1.01463 1.21283 0.93310 0.96037 1.04206 1.22425 0.80240 0.97502 1.01299 1.87735 1.18910 1.29200 1.95635 1.22018 0.91926 0.84986 1.00716 1.21396 0.93084 0.93910 1.07830 1.21121 0.83134 0.91475 0.75151 1.90802 1.67508 1.37696 1.51137 1.45908 1.05871 1.09844 1.74373 1.21129 0.93626 0.83948 0.96758 0.94067 1.21837 0.92972 0.97721 1.00996 1.22785 0.98272 0.94248 0.97451 0.87360 1.22940 0.94923 1.01875 0.95086 1.21877 0.93657 0.89808 0.91438 0.92167 1.22699 0.99015 0.98255 0.96172 1.44851 1.45441 1.37979 1.05631 1.19309 1.13657 1.08010 0.94614 0.91119 1.25508 1.02495 1.02594 0.95596 1.70169 1.46894 1.43574 0.99276 0.85220 0.79013 0.79670 0.76375 1.20791 1.20331 1.22325 1.21005 0.91588 0.93035 0.87797 0.93099 0.88433 0.93155 0.92147 0.92036 0.90583 0.90725 0.92552 0.92339 0.93895 0.93529 0.85375 0.85759 0.74477 0.87514 0.91591 0.87410 0.92002 0.96010 0.89803 0.94819 0.98127 0.97897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.21 10.70 -148.98 -1.59 -8.81 16 3 C 0.06 0.91 5.94 71.98 0.43 1.33 16 4 C -0.11 -1.80 5.95 30.59 0.18 -1.62 16 5 C 0.06 1.13 5.94 71.98 0.43 1.55 16 6 O -0.40 -8.82 10.34 -148.98 -1.54 -10.36 16 7 C 0.08 2.00 5.23 71.98 0.38 2.37 16 8 C -0.12 -2.57 6.07 29.84 0.18 -2.39 16 9 C 0.50 15.83 7.78 87.65 0.68 16.52 16 10 O -0.59 -26.63 15.65 -3.04 -0.05 -26.68 16 11 N -0.71 -19.06 5.11 -439.28 -2.25 -21.31 16 12 C 0.15 5.32 2.08 45.68 0.10 5.41 16 13 H 0.04 2.08 5.51 -2.39 -0.01 2.07 16 14 C -0.10 -2.70 5.01 30.93 0.16 -2.54 16 15 C -0.11 -3.60 4.26 -9.05 -0.04 -3.64 16 16 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 17 C -0.11 -3.36 6.18 32.17 0.20 -3.16 16 18 C 0.14 5.56 4.25 45.79 0.19 5.75 16 19 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 20 C -0.12 -4.36 5.45 31.57 0.17 -4.19 16 21 N -0.61 -32.16 2.46 -664.48 -1.64 -33.79 16 22 C -0.23 -13.50 10.29 84.03 0.86 -12.63 16 23 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 25 N -0.95 -60.30 10.35 21.65 0.22 -60.08 16 26 Si 0.97 49.68 29.55 68.60 2.03 51.71 16 27 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 30 C 0.19 9.46 4.11 86.85 0.36 9.82 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 42 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.42 6.96 8.60 -92.71 -0.80 6.16 16 45 H 0.11 1.96 7.97 -2.39 -0.02 1.94 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 2.34 7.76 -2.39 -0.02 2.32 16 48 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 2.30 8.02 -2.39 -0.02 2.28 16 51 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 53 H 0.00 0.17 6.23 -2.39 -0.01 0.15 16 Total: -1.00 -83.86 414.65 1.25 -82.61 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.08 Total: 16.37 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.99 Total: 10.34 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -3.66 Total: -115.18 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -3.18 Total: -45.85 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.03 Total: 51.71 kcal Total: -83.86 1.25 -82.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724506105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.543 kcal (2) G-P(sol) polarization free energy of solvation -83.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds