Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00399 * 2 1 4 4 H 1.09007 * 109.46538 * 29.99722 * 3 2 1 5 5 C 1.50703 * 109.47125 * 270.00182 * 3 2 1 6 6 O 1.21280 * 119.99843 * 354.99180 * 5 3 2 7 7 N 1.34766 * 120.00016 * 174.99877 * 5 3 2 8 8 C 1.46500 * 120.00136 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.46916 * 34.99831 * 8 7 5 10 10 C 1.53001 * 109.47165 * 154.99903 * 8 7 5 11 11 C 1.53002 * 109.46814 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47454 * 299.99610 * 11 10 8 13 13 H 1.09003 * 109.47275 * 300.00811 * 12 11 10 14 14 C 1.52994 * 109.47701 * 180.02562 * 12 11 10 15 15 N 1.46494 * 109.47475 * 175.00267 * 14 12 11 16 16 C 1.36938 * 119.99938 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00296 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99565 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00525 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99609 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47105 * 60.00388 * 20 18 16 22 22 H 1.48494 * 109.47056 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47171 * 300.00023 * 20 18 16 24 24 C 1.53006 * 109.46869 * 60.00050 * 12 11 10 25 25 C 1.53002 * 109.47042 * 300.00202 * 24 12 11 26 26 C 1.53001 * 109.47477 * 149.99591 * 3 2 1 27 27 H 1.08991 * 110.90877 * 176.41524 * 26 3 2 28 28 C 1.55304 * 110.84593 * 300.00281 * 26 3 2 29 29 C 1.54944 * 100.97800 * 152.30096 * 28 26 3 30 30 O 1.43693 * 105.11450 * 323.61333 * 29 28 26 31 31 C 1.43240 * 109.99409 * 24.36003 * 30 29 28 32 32 H 1.08991 * 109.47271 * 300.00244 * 1 2 3 33 33 H 1.09006 * 109.47129 * 60.00453 * 1 2 3 34 34 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 35 35 H 0.97002 * 120.00310 * 359.97438 * 7 5 3 36 36 H 1.08997 * 109.47152 * 299.99607 * 10 8 7 37 37 H 1.08997 * 109.47262 * 60.00140 * 10 8 7 38 38 H 1.09003 * 109.47542 * 60.00257 * 11 10 8 39 39 H 1.09003 * 109.47251 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47520 * 295.00635 * 14 12 11 41 41 H 1.09002 * 109.46694 * 54.99957 * 14 12 11 42 42 H 0.96997 * 120.00033 * 0.02562 * 15 14 12 43 43 H 0.96994 * 120.00517 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46551 * 60.00317 * 24 12 11 45 45 H 1.08994 * 109.47001 * 180.02562 * 24 12 11 46 46 H 1.08997 * 109.47233 * 299.99817 * 25 24 12 47 47 H 1.09005 * 109.46591 * 179.97438 * 25 24 12 48 48 H 1.09002 * 111.12488 * 270.24072 * 28 26 3 49 49 H 1.08995 * 111.12730 * 34.36067 * 28 26 3 50 50 H 1.08996 * 110.31114 * 82.48962 * 29 28 26 51 51 H 1.09004 * 110.31323 * 204.65778 * 29 28 26 52 52 H 1.09001 * 109.83319 * 238.81565 * 31 30 29 53 53 H 1.08996 * 109.83048 * 117.84247 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9793 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8581 3.4582 -3.0498 9 1 2.0970 3.0112 -3.6892 10 6 2.7474 4.9829 -3.1144 11 6 2.9547 5.4485 -4.5570 12 6 4.3417 5.0171 -5.0379 13 1 5.1031 5.4641 -4.3987 14 6 4.5494 5.4832 -6.4802 15 7 5.9187 5.1759 -6.9004 16 6 6.3376 5.5040 -8.1622 17 1 5.6583 5.9889 -8.8477 18 6 7.6353 5.2132 -8.5602 19 7 8.4630 4.6218 -7.7250 20 14 8.2066 5.6601 -10.2817 21 1 8.0922 7.1279 -10.4757 22 1 9.6218 5.2460 -10.4566 23 1 7.3596 4.9610 -11.2813 24 6 4.4525 3.4924 -4.9732 25 6 4.2451 3.0268 -3.5305 26 6 3.3589 1.2632 0.7213 27 1 3.8526 2.2341 0.6802 28 6 3.1850 0.7934 2.1913 29 6 4.5678 0.1483 2.4605 30 8 4.9367 -0.4781 1.2211 31 6 4.2639 0.1611 0.1300 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 -0.3634 -1.0276 -0.0005 35 1 2.8469 3.6153 -0.9324 36 1 1.7591 5.2902 -2.7724 37 1 3.5085 5.4299 -2.4750 38 1 2.1933 5.0015 -5.1962 39 1 2.8754 6.5346 -4.6033 40 1 3.8447 4.9686 -7.1335 41 1 4.3830 6.5587 -6.5419 42 1 6.5286 4.7401 -6.2849 43 1 9.3696 4.4184 -8.0032 44 1 3.6910 3.0454 -5.6123 45 1 5.4407 3.1851 -5.3153 46 1 5.0065 3.4739 -2.8914 47 1 4.3236 1.9406 -3.4846 48 1 3.0100 1.6393 2.8560 49 1 2.3851 0.0579 2.2767 50 1 5.2964 0.9134 2.7288 51 1 4.4903 -0.5959 3.2532 52 1 3.6567 -0.5671 -0.4077 53 1 4.9947 0.6057 -0.5456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724749815.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -160.540785 kcal Electronic energy + Delta-G solvation = -30800.975422 eV Core-core repulsion = 26671.051592 eV Total energy + Delta-G solvation = -4129.923829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.65389 -40.34506 -39.47092 -38.22912 -36.68102 -35.23056 -34.02593 -33.01308 -31.73953 -31.07172 -30.31080 -28.18480 -27.26788 -26.33107 -24.54300 -23.79881 -23.42705 -22.32536 -21.90745 -21.24842 -20.71571 -19.17647 -18.57219 -18.18342 -17.65679 -17.14887 -16.71114 -16.64300 -16.19000 -15.99470 -15.69782 -15.57680 -15.44263 -15.29645 -15.23914 -14.81366 -14.58933 -14.39269 -14.10802 -13.78264 -13.74589 -13.50395 -13.23891 -13.09898 -12.88160 -12.77434 -12.73111 -12.56722 -12.28442 -12.21657 -12.08145 -12.03678 -11.90767 -11.86679 -11.77328 -11.60548 -11.42415 -11.22878 -11.15256 -10.89844 -10.51490 -10.29941 -10.05593 -8.98937 -7.95567 -5.23951 1.45322 1.48961 1.50574 1.55054 2.01231 2.55520 2.69639 2.93229 3.29393 3.37468 3.55843 3.70086 3.75103 3.79393 3.88339 3.96197 4.07017 4.13781 4.16663 4.27329 4.30078 4.40327 4.42996 4.45765 4.47569 4.52596 4.54717 4.57151 4.59067 4.75169 4.81551 4.84058 4.85383 4.92390 4.94232 4.97118 5.07079 5.09100 5.13178 5.20626 5.24198 5.25163 5.31085 5.45828 5.49394 5.53613 5.61385 5.97839 6.03733 6.27048 6.56660 7.24132 7.32932 8.11048 8.33796 9.27985 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002159 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.352854 B =12967.651787 C =13862.891839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.378 6.378 3 C 0.089 3.911 4 H 0.133 0.867 5 C 0.484 3.516 6 O -0.573 6.573 7 N -0.707 5.707 8 C 0.152 3.848 9 H 0.065 0.935 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.082 4.082 13 H 0.068 0.932 14 C 0.153 3.847 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.280 1.280 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.111 4.111 27 H 0.128 0.872 28 C -0.136 4.136 29 C 0.039 3.961 30 O -0.413 6.413 31 C 0.056 3.944 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.094 0.906 35 H 0.418 0.582 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.012 0.988 41 H 0.023 0.977 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.094 0.906 52 H 0.055 0.945 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.911 -1.974 27.737 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.027 3.973 4 H 0.150 0.850 5 C 0.270 3.730 6 O -0.451 6.451 7 N -0.360 5.360 8 C 0.047 3.953 9 H 0.083 0.917 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.101 4.101 13 H 0.087 0.913 14 C 0.027 3.973 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.206 1.206 24 C -0.140 4.140 25 C -0.155 4.155 26 C -0.129 4.129 27 H 0.146 0.854 28 C -0.173 4.173 29 C -0.037 4.037 30 O -0.333 6.333 31 C -0.021 4.021 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.255 0.745 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.030 0.970 41 H 0.041 0.959 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.139 0.861 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.112 0.888 52 H 0.074 0.926 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.885 -2.794 26.907 32.991 hybrid contribution 0.859 0.104 -1.222 1.498 sum -18.025 -2.690 25.685 31.494 Atomic orbital electron populations 1.23017 0.79235 1.04051 1.00786 1.87992 1.21595 1.25736 1.94257 1.22014 0.97170 0.87509 0.90604 0.84998 1.21937 0.76349 0.81884 0.92809 1.90734 1.51845 1.54809 1.47727 1.45989 1.66784 1.14146 1.09130 1.20866 0.95894 0.95887 0.82623 0.91718 1.21716 1.04036 0.91839 0.97175 1.21436 0.94758 1.01815 0.96069 1.21239 0.98782 0.94856 0.95241 0.91345 1.20891 0.85487 0.96817 0.94145 1.42608 1.10348 1.72406 1.13428 1.19629 0.95705 1.31127 0.91442 0.90790 1.25591 0.96889 1.02329 1.02165 1.69808 1.06314 1.49110 1.36906 0.85197 0.76638 0.78127 0.79726 1.20108 1.22095 1.20585 1.21364 1.00504 0.95930 0.96171 1.21798 0.97905 0.99668 0.96163 1.22931 0.92750 1.01036 0.96220 0.85418 1.23285 0.97708 1.02570 0.93713 1.23656 0.95794 0.97845 0.86357 1.88401 1.69315 1.59193 1.16407 1.23037 0.94429 0.95001 0.89642 0.90786 0.94938 0.88797 0.74465 0.88870 0.89549 0.91935 0.89845 0.96996 0.95884 0.79408 0.94012 0.93306 0.94305 0.90844 0.94179 0.86090 0.89861 0.90761 0.88771 0.92630 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.81 113.37 1.23 1.55 16 2 O -0.38 -7.10 8.00 -129.99 -1.04 -8.14 16 3 C 0.09 1.20 2.30 29.85 0.07 1.27 16 4 H 0.13 0.70 7.79 -2.38 -0.02 0.68 16 5 C 0.48 9.99 6.68 87.66 0.59 10.58 16 6 O -0.57 -18.40 16.17 15.96 0.26 -18.15 16 7 N -0.71 -10.85 5.04 -442.54 -2.23 -13.08 16 8 C 0.15 3.18 2.45 44.99 0.11 3.29 16 9 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 10 C -0.11 -1.72 5.39 30.60 0.16 -1.55 16 11 C -0.10 -2.23 5.20 30.59 0.16 -2.07 16 12 C -0.08 -2.56 2.22 -10.79 -0.02 -2.59 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.15 6.23 5.65 86.38 0.49 6.72 16 15 N -0.75 -39.18 5.33 -343.47 -1.83 -41.01 16 16 C -0.25 -14.28 9.99 84.04 0.84 -13.44 16 17 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 20 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C -0.10 -3.40 5.08 30.60 0.16 -3.24 16 25 C -0.12 -3.17 5.50 30.60 0.17 -3.00 16 26 C -0.11 -1.33 2.85 -9.53 -0.03 -1.36 16 27 H 0.13 0.87 7.95 -2.39 -0.02 0.85 16 28 C -0.14 -1.12 6.55 32.05 0.21 -0.91 16 29 C 0.04 0.50 7.78 72.65 0.57 1.07 16 30 O -0.41 -9.57 11.36 -148.98 -1.69 -11.26 16 31 C 0.06 1.21 6.86 72.45 0.50 1.71 16 32 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 2.96 8.41 -92.71 -0.78 2.18 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.37 20.86 6.85 -92.71 -0.63 20.22 16 43 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.58 7.18 -2.39 -0.02 1.56 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.08 0.83 7.43 -2.39 -0.02 0.81 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.06 1.53 6.98 -2.39 -0.02 1.51 16 53 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -81.61 415.30 0.91 -80.70 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.53 Total: 28.51 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.65 Total: -6.11 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.78 Total: -114.90 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.47 Total: -37.55 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -81.61 0.91 -80.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724749815.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.839 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds