Wall clock time and date at job start Sat Apr 11 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99615 * 2 1 4 4 C 1.53781 * 113.61093 * 247.49599 * 3 2 1 5 5 C 1.53777 * 87.07977 * 220.01856 * 4 3 2 6 6 C 1.50705 * 113.61417 * 139.98264 * 5 4 3 7 7 O 1.21278 * 119.99864 * 262.50615 * 6 5 4 8 8 N 1.34778 * 120.00285 * 82.50257 * 6 5 4 9 9 C 1.46932 * 120.62571 * 359.72328 * 8 6 5 10 10 C 1.52758 * 109.00532 * 233.58345 * 9 8 6 11 11 C 1.53043 * 109.38510 * 305.58921 * 10 9 8 12 12 O 1.42894 * 109.45051 * 181.25441 * 11 10 9 13 13 C 1.42907 * 114.00110 * 89.93855 * 12 11 10 14 14 C 1.52994 * 109.47070 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.47078 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47442 * 180.02562 * 15 14 13 17 17 C 1.36931 * 120.00225 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99831 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00284 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00375 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47235 * 119.99750 * 21 19 17 24 24 H 1.48500 * 109.46983 * 239.99828 * 21 19 17 25 25 C 1.53036 * 109.53781 * 61.23837 * 11 10 9 26 26 C 1.46923 * 120.63331 * 180.02562 * 8 6 5 27 27 C 1.53780 * 87.08217 * 25.43602 * 5 4 3 28 28 H 1.09001 * 109.47659 * 60.00215 * 1 2 3 29 29 H 1.09006 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47325 * 300.00090 * 1 2 3 31 31 H 1.08993 * 112.85007 * 18.80154 * 3 2 1 32 32 H 1.08993 * 113.61733 * 334.56970 * 4 3 2 33 33 H 1.09001 * 113.61258 * 105.47714 * 4 3 2 34 34 H 1.09001 * 113.69684 * 270.87006 * 5 4 3 35 35 H 1.09000 * 109.58779 * 353.41437 * 9 8 6 36 36 H 1.08999 * 109.58843 * 113.84498 * 9 8 6 37 37 H 1.09001 * 109.56390 * 185.55484 * 10 9 8 38 38 H 1.09005 * 109.36083 * 65.50089 * 10 9 8 39 39 H 1.09001 * 109.45712 * 301.22028 * 11 10 9 40 40 H 1.08997 * 109.47139 * 300.00206 * 13 12 11 41 41 H 1.08999 * 109.46549 * 59.99635 * 13 12 11 42 42 H 1.08995 * 109.47250 * 299.99563 * 14 13 12 43 43 H 1.08999 * 109.47721 * 60.00367 * 14 13 12 44 44 H 1.08997 * 109.47174 * 300.00246 * 15 14 13 45 45 H 1.08999 * 109.46506 * 59.99671 * 15 14 13 46 46 H 0.97005 * 119.99837 * 0.02562 * 16 15 14 47 47 H 0.97001 * 119.99742 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.50123 * 178.68554 * 25 11 10 49 49 H 1.09004 * 109.49806 * 58.59103 * 25 11 10 50 50 H 1.08991 * 109.58609 * 246.15355 * 26 8 6 51 51 H 1.09004 * 109.58546 * 6.44201 * 26 8 6 52 52 H 1.09000 * 113.61269 * 220.01900 * 27 5 4 53 53 H 1.08997 * 113.69385 * 89.12846 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.7533 1.6489 -1.3018 5 6 3.8225 2.3183 -0.4223 6 6 5.2327 2.0719 -0.8935 7 8 5.8964 1.1924 -0.3869 8 7 5.7562 2.8290 -1.8781 9 6 4.9623 3.8942 -2.5057 10 6 4.9636 3.6894 -4.0195 11 6 6.4076 3.6035 -4.5193 12 8 6.4109 3.4411 -5.9389 13 6 6.4367 4.6719 -6.6647 14 6 6.4387 4.3785 -8.1663 15 6 6.4656 5.6963 -8.9434 16 7 6.4668 5.4155 -10.3811 17 6 6.4898 6.4479 -11.2804 18 1 6.5065 7.4693 -10.9296 19 6 6.4904 6.1819 -12.6428 20 7 6.4695 4.9371 -13.0702 21 14 6.5209 7.5902 -13.8695 22 1 6.5408 8.8829 -13.1388 23 1 7.7351 7.4818 -14.7176 24 1 5.3105 7.5257 -14.7274 25 6 7.1044 2.4069 -3.8676 26 6 7.1291 2.6005 -2.3486 27 6 3.3755 1.3720 0.7045 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.3136 2.0789 0.3237 32 1 3.1165 0.7741 -1.8410 33 1 2.2139 2.3477 -1.9412 34 1 3.6234 3.3696 -0.2144 35 1 3.9384 3.8543 -2.1339 36 1 5.4011 4.8639 -2.2707 37 1 4.4610 4.5278 -4.5017 38 1 4.4400 2.7639 -4.2594 39 1 6.9376 4.5192 -4.2572 40 1 5.5563 5.2621 -6.4106 41 1 7.3359 5.2294 -6.4025 42 1 7.3193 3.7887 -8.4201 43 1 5.5397 3.8208 -8.4288 44 1 5.5847 6.2859 -8.6895 45 1 7.3643 6.2544 -8.6809 46 1 6.4514 4.4982 -10.6962 47 1 6.4703 4.7512 -14.0222 48 1 8.1255 2.3325 -4.2415 49 1 6.5607 1.4935 -4.1089 50 1 7.7486 3.4622 -2.1004 51 1 7.5353 1.7087 -1.8711 52 1 3.3383 1.8472 1.6847 53 1 3.9082 0.4211 0.7151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725219759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:38 Heat of formation + Delta-G solvation = -124.577326 kcal Electronic energy + Delta-G solvation = -29421.795552 eV Core-core repulsion = 25293.431215 eV Total energy + Delta-G solvation = -4128.364337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77307 -40.15529 -39.25766 -37.74173 -36.82731 -36.74385 -34.30331 -33.02705 -32.20210 -31.26454 -28.31434 -27.19287 -26.75042 -26.60434 -25.22587 -24.44995 -23.92921 -22.48898 -22.07758 -21.02753 -19.76664 -19.14245 -18.78065 -17.80559 -17.40932 -16.97401 -16.82715 -16.59602 -16.49915 -16.22250 -15.89462 -15.69043 -15.41137 -15.36065 -15.24849 -14.90818 -14.56900 -14.44868 -14.06482 -13.80044 -13.53621 -13.39823 -13.27055 -13.07676 -12.88986 -12.87249 -12.73211 -12.47155 -12.39980 -12.30228 -12.08670 -12.06835 -12.02209 -11.85301 -11.78454 -11.72146 -11.68857 -11.47959 -10.95916 -10.80514 -10.43513 -10.37043 -9.76042 -9.02964 -7.96424 -5.26659 1.47914 1.49397 1.52059 1.59638 1.92324 2.50709 2.66466 2.90253 3.37550 3.38111 3.50055 3.60777 3.74080 3.76382 3.83366 3.91880 3.99759 4.04334 4.09732 4.13794 4.28719 4.30061 4.32731 4.37674 4.46571 4.53693 4.59260 4.59833 4.64924 4.70436 4.72579 4.75517 4.76556 4.77715 4.81982 4.82753 4.88342 4.94520 4.97680 5.05769 5.11444 5.21459 5.25059 5.33201 5.33843 5.48846 5.50837 6.25190 6.33622 6.34278 6.35104 7.11208 7.31327 8.06828 8.29536 9.27667 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.001585 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.907503 B =17661.768918 C =18636.999025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.065 3.935 4 C -0.136 4.136 5 C -0.128 4.128 6 C 0.521 3.479 7 O -0.587 6.587 8 N -0.610 5.610 9 C 0.110 3.890 10 C -0.155 4.155 11 C 0.085 3.915 12 O -0.403 6.403 13 C 0.078 3.922 14 C -0.115 4.115 15 C 0.156 3.844 16 N -0.751 5.751 17 C -0.248 4.248 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.126 4.126 26 C 0.116 3.884 27 C -0.122 4.122 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.027 0.973 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.094 0.906 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 -1.851 33.647 35.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.007 3.993 4 C -0.174 4.174 5 C -0.149 4.149 6 C 0.311 3.689 7 O -0.467 6.467 8 N -0.342 5.342 9 C -0.011 4.011 10 C -0.193 4.193 11 C 0.028 3.972 12 O -0.323 6.323 13 C 0.001 3.999 14 C -0.153 4.153 15 C 0.029 3.971 16 N -0.393 5.393 17 C -0.380 4.380 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.165 4.165 26 C -0.006 4.006 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.171 0.829 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.109 0.891 51 H 0.097 0.903 52 H 0.112 0.888 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.573 -2.452 33.796 35.211 hybrid contribution 0.160 0.098 -1.309 1.323 sum -9.413 -2.354 32.487 33.904 Atomic orbital electron populations 1.22977 0.79596 1.03590 1.01131 1.87955 1.21536 1.28542 1.94633 1.23838 0.94003 0.85698 0.95746 1.23413 0.95814 1.00587 0.97572 1.22600 0.89902 1.03238 0.99120 1.20964 0.89188 0.80000 0.78747 1.90674 1.63336 1.34280 1.58408 1.48280 1.14749 1.35032 1.36170 1.21883 0.97725 0.90292 0.91239 1.22341 0.97109 1.03655 0.96217 1.22199 0.96175 0.98741 0.80084 1.87920 1.95218 1.30894 1.18292 1.22350 1.01361 0.85998 0.90161 1.21489 1.02092 0.97624 0.94056 1.20673 0.98262 0.95123 0.83018 1.42623 1.89520 1.05860 1.01338 1.19736 1.41291 0.89023 0.87944 0.90164 1.25669 1.03550 0.98901 0.99000 1.69848 1.59465 1.19208 1.13738 0.84997 0.76666 0.78859 0.78754 1.18682 1.22021 1.21963 1.21912 1.01945 0.98068 0.94532 1.21539 0.83204 1.03215 0.92678 1.23110 0.95148 0.99441 0.98277 0.92976 0.89427 0.92435 0.85906 0.91595 0.87714 0.82859 0.86911 0.88659 0.88853 0.92108 0.90189 0.91571 0.92000 0.92561 0.92377 0.95322 0.95546 0.79599 0.93964 0.89742 0.92767 0.89136 0.90329 0.88766 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.85 113.37 1.23 1.44 16 2 O -0.41 -6.70 10.71 -148.98 -1.60 -8.29 16 3 C 0.06 0.71 4.31 31.12 0.13 0.85 16 4 C -0.14 -1.53 7.04 31.12 0.22 -1.31 16 5 C -0.13 -1.41 2.72 -11.01 -0.03 -1.44 16 6 C 0.52 9.79 7.22 87.66 0.63 10.42 16 7 O -0.59 -16.54 15.31 -3.02 -0.05 -16.58 16 8 N -0.61 -9.07 2.98 -819.82 -2.44 -11.51 16 9 C 0.11 0.94 6.28 86.22 0.54 1.48 16 10 C -0.15 -2.04 5.68 30.53 0.17 -1.86 16 11 C 0.09 1.48 2.57 30.62 0.08 1.55 16 12 O -0.40 -10.09 9.99 -148.98 -1.49 -11.58 16 13 C 0.08 1.89 5.75 71.98 0.41 2.30 16 14 C -0.11 -3.77 5.70 30.59 0.17 -3.60 16 15 C 0.16 6.12 6.26 86.38 0.54 6.66 16 16 N -0.75 -39.10 5.60 -343.45 -1.92 -41.03 16 17 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 21 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 C -0.13 -2.27 5.73 30.66 0.18 -2.09 16 26 C 0.12 1.87 6.43 86.35 0.56 2.42 16 27 C -0.12 -1.69 7.23 31.12 0.23 -1.46 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.12 0.57 7.87 -2.39 -0.02 0.55 16 32 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 33 H 0.10 0.64 7.95 -2.39 -0.02 0.62 16 34 H 0.15 0.54 7.49 -2.39 -0.02 0.53 16 35 H 0.11 0.45 5.45 -2.39 -0.01 0.44 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 1.04 7.84 -2.39 -0.02 1.03 16 38 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 40 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 41 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 46 H 0.37 20.83 7.67 -92.70 -0.71 20.11 16 47 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.08 1.59 7.00 -2.38 -0.02 1.58 16 52 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.07 1.48 7.44 -2.39 -0.02 1.46 16 Total: -1.00 -77.95 420.29 1.35 -76.60 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.17 Total: 26.40 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 6.37 Total: -1.94 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -4.08 Total: -112.74 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -3.13 Total: -36.45 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.95 1.35 -76.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725219759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.979 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds