Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 113.99581 * 2 1 4 4 C 1.52996 * 109.46763 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47050 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47198 * 180.02562 * 5 4 3 7 7 C 1.42905 * 114.00146 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47413 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00238 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00515 * 180.02562 * 8 7 6 11 11 C 1.47091 * 125.62475 * 359.97201 * 10 8 7 12 12 C 1.54452 * 107.29775 * 179.03697 * 11 10 8 13 13 C 1.54393 * 102.86998 * 338.49601 * 12 11 10 14 14 C 1.47573 * 125.63419 * 179.97438 * 10 8 7 15 15 C 1.52110 * 110.49962 * 152.63443 * 13 12 11 16 16 C 1.53335 * 109.44452 * 64.09166 * 15 13 12 17 17 N 1.46928 * 108.68926 * 53.29417 * 16 15 13 18 18 C 1.36945 * 120.54770 * 125.63861 * 17 16 15 19 19 H 1.07998 * 120.00194 * 331.63141 * 18 17 16 20 20 C 1.38809 * 119.99564 * 151.63714 * 18 17 16 21 21 N 1.31623 * 120.00442 * 342.92845 * 20 18 17 22 22 Si 1.86797 * 119.99773 * 162.93148 * 20 18 17 23 23 H 1.48507 * 109.47192 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.47347 * 209.99889 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99872 * 22 20 18 26 26 C 1.46930 * 118.90135 * 305.65610 * 17 16 15 27 27 C 1.52109 * 110.51603 * 276.65420 * 13 12 11 28 28 H 1.08998 * 109.47339 * 59.99977 * 1 2 3 29 29 H 1.09005 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47482 * 299.99467 * 1 2 3 31 31 H 1.09003 * 109.46674 * 60.00462 * 3 2 1 32 32 H 1.08996 * 109.46969 * 300.00228 * 3 2 1 33 33 H 1.09000 * 109.47177 * 60.00318 * 4 3 2 34 34 H 1.08996 * 109.47688 * 299.99939 * 4 3 2 35 35 H 1.09000 * 109.46913 * 60.00105 * 5 4 3 36 36 H 1.09002 * 109.47594 * 300.00217 * 5 4 3 37 37 H 1.09002 * 109.47096 * 59.99970 * 7 6 5 38 38 H 1.08997 * 109.47011 * 300.00380 * 7 6 5 39 39 H 1.09005 * 109.87843 * 59.60696 * 11 10 8 40 40 H 1.09003 * 110.00021 * 298.53059 * 11 10 8 41 41 H 1.09008 * 110.73209 * 220.15483 * 12 11 10 42 42 H 1.08998 * 110.73485 * 96.84680 * 12 11 10 43 43 H 1.08996 * 110.37246 * 84.46797 * 14 10 8 44 44 H 1.08998 * 110.37134 * 322.12314 * 14 10 8 45 45 H 1.09007 * 109.47512 * 184.08227 * 15 13 12 46 46 H 1.08999 * 109.47804 * 304.09222 * 15 13 12 47 47 H 1.09004 * 109.60097 * 173.05619 * 16 15 13 48 48 H 1.09000 * 109.60102 * 293.53353 * 16 15 13 49 49 H 0.96996 * 120.00009 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.60246 * 294.59005 * 26 17 16 51 51 H 1.08999 * 109.73619 * 174.18429 * 26 17 16 52 52 H 1.09003 * 109.46963 * 55.91279 * 27 13 12 53 53 H 1.08997 * 109.47839 * 175.92111 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1576 2.5825 0.0013 6 8 5.5821 2.4697 0.0013 7 6 6.2646 3.7253 0.0013 8 6 7.7527 3.4881 0.0007 9 8 8.1864 2.3554 0.0007 10 7 8.6020 4.5347 0.0011 11 6 8.2135 5.9533 0.0015 12 6 9.5143 6.7857 0.0267 13 6 10.5496 5.7888 0.5906 14 6 10.0751 4.4465 0.0011 15 6 11.9454 6.1318 0.0926 16 6 12.3574 7.5058 0.6343 17 7 12.1947 7.5042 2.0946 18 6 13.2398 7.8439 2.9117 19 1 14.2560 7.6740 2.5878 20 6 12.9931 8.4066 4.1564 21 7 11.8116 8.9217 4.4233 22 14 14.3378 8.4330 5.4526 23 1 15.1285 9.6831 5.3203 24 1 13.7242 8.3762 6.8037 25 1 15.2298 7.2608 5.2644 26 6 10.8923 7.1316 2.6636 27 6 10.4888 5.7596 2.1102 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6885 1.8464 0.8901 32 1 1.6884 1.8464 -0.8899 33 1 3.8573 0.6438 -0.8891 34 1 3.8567 0.6441 0.8908 35 1 3.8355 3.1231 0.8913 36 1 3.8364 3.1237 -0.8887 37 1 5.9867 4.2899 0.8913 38 1 5.9866 4.2899 -0.8886 39 1 7.6153 6.1735 0.8858 40 1 7.6432 6.1840 -0.8983 41 1 9.4086 7.6469 0.6866 42 1 9.7902 7.1009 -0.9796 43 1 10.4480 4.3259 -1.0160 44 1 10.4057 3.6185 0.6281 45 1 12.6510 5.3773 0.4407 46 1 11.9469 6.1554 -0.9972 47 1 13.4000 7.7004 0.3828 48 1 11.7232 8.2766 0.1966 49 1 11.6391 9.3146 5.2932 50 1 10.1448 7.8735 2.3826 51 1 10.9663 7.0804 3.7499 52 1 9.4735 5.5235 2.4287 53 1 11.1738 5.0000 2.4868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733292270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -106.375974 kcal Electronic energy + Delta-G solvation = -30099.231251 eV Core-core repulsion = 25971.656184 eV Total energy + Delta-G solvation = -4127.575067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.43988 -38.97557 -38.41008 -37.53006 -35.84440 -33.27265 -33.07998 -31.01847 -30.01839 -29.54627 -28.85529 -27.41002 -26.36686 -24.95249 -23.87175 -23.02820 -22.25916 -22.03752 -20.91161 -19.42585 -18.14256 -17.53782 -17.06902 -16.92112 -16.61499 -16.41203 -16.11280 -15.69919 -15.30657 -15.09817 -14.90149 -14.53226 -14.09126 -13.80546 -13.63694 -13.59517 -13.33727 -13.05043 -12.81614 -12.69030 -12.54106 -12.33275 -12.21674 -12.08400 -11.85070 -11.57264 -11.45666 -11.38549 -11.32736 -11.08942 -10.76710 -10.70834 -10.48505 -10.22583 -10.15990 -10.13633 -10.00657 -9.86929 -9.80760 -9.54623 -9.44318 -8.58456 -8.46554 -6.66868 -5.81004 -3.22945 2.51737 2.60006 3.19696 3.36380 3.43926 3.46595 3.85555 4.40348 4.48544 4.48813 4.66313 4.70486 4.73892 4.82639 4.86863 4.88126 4.90475 4.92274 4.98598 5.02022 5.11110 5.12186 5.23424 5.29246 5.37068 5.38937 5.49420 5.64795 5.69125 5.75896 5.77505 5.90885 5.93231 6.06515 6.08268 6.18837 6.26493 6.33162 6.48692 6.60279 6.66999 6.68730 6.71758 6.78139 6.83739 6.95325 7.33889 7.51936 7.63639 7.78510 8.16784 8.44029 9.20160 9.83688 10.39840 11.27381 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.001820 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.016072 B =15381.652997 C =16043.663864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.065 3.935 6 O -0.361 6.361 7 C 0.051 3.949 8 C 0.527 3.473 9 O -0.525 6.525 10 N -0.613 5.613 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.056 4.056 14 C 0.116 3.884 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.125 4.125 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.253 0.747 50 H 0.019 0.981 51 H 0.087 0.913 52 H 0.047 0.953 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.677 -8.548 -11.393 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.157 4.157 5 C -0.012 4.012 6 O -0.280 6.280 7 C -0.029 4.029 8 C 0.315 3.685 9 O -0.400 6.400 10 N -0.349 5.349 11 C -0.024 4.024 12 C -0.161 4.161 13 C -0.057 4.057 14 C -0.006 4.006 15 C -0.158 4.158 16 C 0.021 3.979 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.047 3.953 27 C -0.165 4.165 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.063 0.937 50 H 0.037 0.963 51 H 0.105 0.895 52 H 0.066 0.934 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.353 -9.495 -11.232 24.307 hybrid contribution 0.158 0.676 0.722 1.001 sum -19.195 -8.819 -10.510 23.594 Atomic orbital electron populations 1.22762 0.80738 1.02952 1.00048 1.87884 1.19900 1.27744 1.95438 1.22361 0.93423 0.84919 1.00433 1.21346 0.92516 0.96687 1.05174 1.22357 0.81009 0.97266 1.00552 1.87993 1.17476 1.27041 1.95450 1.22168 0.90801 0.87364 1.02586 1.19783 0.87427 0.84153 0.77171 1.90733 1.78516 1.21836 1.48923 1.48481 1.07376 1.05977 1.73095 1.22178 0.98756 0.80370 1.01138 1.22718 0.92761 0.98573 1.02053 1.21008 0.95372 0.92249 0.97028 1.22376 0.78263 0.99260 1.00678 1.21852 0.94651 1.00808 0.98471 1.20904 0.98532 0.92470 0.85981 1.44025 1.10026 1.77956 0.99329 1.19177 0.87168 1.34248 0.97586 0.91791 1.25018 0.96842 0.97852 0.99836 1.70018 1.22072 1.40508 1.22169 0.86334 0.81419 0.77905 0.81334 1.21420 1.21602 1.20496 1.20808 0.85987 0.89004 0.99473 1.22017 0.99771 1.02119 0.92550 0.93999 0.89466 0.93947 0.92987 0.93049 0.89988 0.89913 0.92806 0.92936 0.90124 0.90358 0.91325 0.91731 0.88734 0.90868 0.91741 0.90534 0.92000 0.92851 0.92797 0.96304 0.93690 0.96271 0.89529 0.93404 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.49 10.70 -35.23 -0.38 -3.87 16 3 C 0.07 0.46 5.94 37.16 0.22 0.68 16 4 C -0.12 -1.02 5.95 -26.73 -0.16 -1.18 16 5 C 0.07 0.54 5.94 37.16 0.22 0.76 16 6 O -0.36 -4.52 9.88 -55.14 -0.54 -5.06 16 7 C 0.05 0.55 5.61 36.00 0.20 0.75 16 8 C 0.53 7.82 7.93 -10.99 -0.09 7.73 16 9 O -0.52 -10.10 16.77 -14.36 -0.24 -10.34 16 10 N -0.61 -8.35 3.32 -170.77 -0.57 -8.92 16 11 C 0.10 1.09 6.11 -2.96 -0.02 1.07 16 12 C -0.12 -1.61 4.92 -25.24 -0.12 -1.74 16 13 C -0.06 -0.85 0.55 -154.11 -0.08 -0.94 16 14 C 0.12 1.70 5.81 -2.88 -0.02 1.68 16 15 C -0.12 -1.89 4.84 -27.01 -0.13 -2.02 16 16 C 0.15 2.87 6.24 -3.64 -0.02 2.85 16 17 N -0.59 -14.03 2.98 -172.13 -0.51 -14.55 16 18 C -0.25 -6.73 9.57 -15.06 -0.14 -6.88 16 19 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -25.48 11.20 55.49 0.62 -24.86 16 22 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.17 3.87 5.01 -3.63 -0.02 3.85 16 27 C -0.13 -2.29 4.85 -27.01 -0.13 -2.42 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.39 6.17 -51.92 -0.32 1.07 16 42 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 43 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 44 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.02 0.36 7.62 -51.93 -0.40 -0.03 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 51 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 52 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 53 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 413.39 15.07 6.23 6.23 Total: -1.00 -33.08 413.39 -9.43 -42.50 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -9.74 Total: -3.00 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.73 Total: 5.50 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.46 Total: -48.33 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.16 Total: -19.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.08 -9.43 -42.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733292270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.872 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds