Wall clock time and date at job start Sat Apr 11 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 113.99581 * 2 1 4 4 C 1.52996 * 109.46763 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47050 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47198 * 180.02562 * 5 4 3 7 7 C 1.42905 * 114.00146 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47413 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00238 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00515 * 180.02562 * 8 7 6 11 11 C 1.47091 * 125.62475 * 359.97201 * 10 8 7 12 12 C 1.54452 * 107.29775 * 179.03697 * 11 10 8 13 13 C 1.54393 * 102.86998 * 338.49601 * 12 11 10 14 14 C 1.47573 * 125.63419 * 179.97438 * 10 8 7 15 15 C 1.52110 * 110.49962 * 152.63443 * 13 12 11 16 16 C 1.53335 * 109.44452 * 64.09166 * 15 13 12 17 17 N 1.46928 * 108.68926 * 53.29417 * 16 15 13 18 18 C 1.36945 * 120.54770 * 125.63861 * 17 16 15 19 19 H 1.07998 * 120.00194 * 331.63141 * 18 17 16 20 20 C 1.38809 * 119.99564 * 151.63714 * 18 17 16 21 21 N 1.31623 * 120.00442 * 342.92845 * 20 18 17 22 22 Si 1.86797 * 119.99773 * 162.93148 * 20 18 17 23 23 H 1.48507 * 109.47192 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.47347 * 209.99889 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99872 * 22 20 18 26 26 C 1.46930 * 118.90135 * 305.65610 * 17 16 15 27 27 C 1.52109 * 110.51603 * 276.65420 * 13 12 11 28 28 H 1.08998 * 109.47339 * 59.99977 * 1 2 3 29 29 H 1.09005 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47482 * 299.99467 * 1 2 3 31 31 H 1.09003 * 109.46674 * 60.00462 * 3 2 1 32 32 H 1.08996 * 109.46969 * 300.00228 * 3 2 1 33 33 H 1.09000 * 109.47177 * 60.00318 * 4 3 2 34 34 H 1.08996 * 109.47688 * 299.99939 * 4 3 2 35 35 H 1.09000 * 109.46913 * 60.00105 * 5 4 3 36 36 H 1.09002 * 109.47594 * 300.00217 * 5 4 3 37 37 H 1.09002 * 109.47096 * 59.99970 * 7 6 5 38 38 H 1.08997 * 109.47011 * 300.00380 * 7 6 5 39 39 H 1.09005 * 109.87843 * 59.60696 * 11 10 8 40 40 H 1.09003 * 110.00021 * 298.53059 * 11 10 8 41 41 H 1.09008 * 110.73209 * 220.15483 * 12 11 10 42 42 H 1.08998 * 110.73485 * 96.84680 * 12 11 10 43 43 H 1.08996 * 110.37246 * 84.46797 * 14 10 8 44 44 H 1.08998 * 110.37134 * 322.12314 * 14 10 8 45 45 H 1.09007 * 109.47512 * 184.08227 * 15 13 12 46 46 H 1.08999 * 109.47804 * 304.09222 * 15 13 12 47 47 H 1.09004 * 109.60097 * 173.05619 * 16 15 13 48 48 H 1.09000 * 109.60102 * 293.53353 * 16 15 13 49 49 H 0.96996 * 120.00009 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.60246 * 294.59005 * 26 17 16 51 51 H 1.08999 * 109.73619 * 174.18429 * 26 17 16 52 52 H 1.09003 * 109.46963 * 55.91279 * 27 13 12 53 53 H 1.08997 * 109.47839 * 175.92111 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1576 2.5825 0.0013 6 8 5.5821 2.4697 0.0013 7 6 6.2646 3.7253 0.0013 8 6 7.7527 3.4881 0.0007 9 8 8.1864 2.3554 0.0007 10 7 8.6020 4.5347 0.0011 11 6 8.2135 5.9533 0.0015 12 6 9.5143 6.7857 0.0267 13 6 10.5496 5.7888 0.5906 14 6 10.0751 4.4465 0.0011 15 6 11.9454 6.1318 0.0926 16 6 12.3574 7.5058 0.6343 17 7 12.1947 7.5042 2.0946 18 6 13.2398 7.8439 2.9117 19 1 14.2560 7.6740 2.5878 20 6 12.9931 8.4066 4.1564 21 7 11.8116 8.9217 4.4233 22 14 14.3378 8.4330 5.4526 23 1 15.1285 9.6831 5.3203 24 1 13.7242 8.3762 6.8037 25 1 15.2298 7.2608 5.2644 26 6 10.8923 7.1316 2.6636 27 6 10.4888 5.7596 2.1102 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6885 1.8464 0.8901 32 1 1.6884 1.8464 -0.8899 33 1 3.8573 0.6438 -0.8891 34 1 3.8567 0.6441 0.8908 35 1 3.8355 3.1231 0.8913 36 1 3.8364 3.1237 -0.8887 37 1 5.9867 4.2899 0.8913 38 1 5.9866 4.2899 -0.8886 39 1 7.6153 6.1735 0.8858 40 1 7.6432 6.1840 -0.8983 41 1 9.4086 7.6469 0.6866 42 1 9.7902 7.1009 -0.9796 43 1 10.4480 4.3259 -1.0160 44 1 10.4057 3.6185 0.6281 45 1 12.6510 5.3773 0.4407 46 1 11.9469 6.1554 -0.9972 47 1 13.4000 7.7004 0.3828 48 1 11.7232 8.2766 0.1966 49 1 11.6391 9.3146 5.2932 50 1 10.1448 7.8735 2.3826 51 1 10.9663 7.0804 3.7499 52 1 9.4735 5.5235 2.4287 53 1 11.1738 5.0000 2.4868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733292270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:04 Heat of formation + Delta-G solvation = -127.151855 kcal Electronic energy + Delta-G solvation = -30100.132161 eV Core-core repulsion = 25971.656184 eV Total energy + Delta-G solvation = -4128.475977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.59928 -40.04742 -39.11655 -38.39754 -37.32719 -34.79320 -33.82846 -32.67959 -31.63274 -30.62543 -29.92248 -28.21111 -27.48234 -25.79784 -25.30452 -24.15974 -23.72898 -22.66556 -22.49554 -20.49575 -19.61527 -18.58228 -18.23158 -17.78360 -17.43283 -17.26984 -17.07455 -16.79527 -16.54128 -16.23603 -15.82285 -15.63865 -15.52311 -15.18193 -15.00930 -14.61406 -14.42566 -14.34953 -14.28197 -13.82987 -13.53695 -13.44711 -13.21119 -13.08867 -12.95672 -12.73640 -12.59395 -12.50150 -12.43946 -12.22596 -12.17476 -12.08672 -11.96605 -11.81045 -11.75133 -11.42858 -11.14179 -11.08415 -10.84042 -10.70183 -10.63779 -10.48166 -9.66901 -8.60773 -7.85550 -5.29020 1.45438 1.48144 1.52244 1.56635 1.63820 2.52216 2.53464 3.16801 3.28428 3.46036 3.62612 3.75169 3.79687 3.88174 3.91639 4.09461 4.16772 4.21746 4.25320 4.28641 4.33575 4.40786 4.43409 4.44678 4.52319 4.55477 4.56752 4.57930 4.64200 4.74268 4.75283 4.78751 4.86334 4.91523 4.96124 5.05632 5.07298 5.09818 5.10153 5.21453 5.29505 5.35997 5.41737 5.44980 5.57554 5.68434 5.83300 6.05530 6.23011 6.42686 6.49170 7.09464 7.19024 7.91931 8.41469 9.19977 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.001820 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.016072 B =15381.652997 C =16043.663864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.067 3.933 4 C -0.119 4.119 5 C 0.064 3.936 6 O -0.400 6.400 7 C 0.056 3.944 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.118 4.118 13 C -0.054 4.054 14 C 0.121 3.879 15 C -0.108 4.108 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.062 0.938 20 C -0.047 4.047 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.183 3.817 27 C -0.110 4.110 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.028 0.972 49 H 0.249 0.751 50 H 0.013 0.987 51 H 0.045 0.955 52 H 0.056 0.944 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.448 -7.745 -13.299 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.009 4.009 4 C -0.157 4.157 5 C -0.012 4.012 6 O -0.319 6.319 7 C -0.023 4.023 8 C 0.309 3.691 9 O -0.462 6.462 10 N -0.346 5.346 11 C -0.022 4.022 12 C -0.156 4.156 13 C -0.055 4.055 14 C -0.001 4.001 15 C -0.147 4.147 16 C 0.019 3.981 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.057 3.943 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.031 0.969 51 H 0.063 0.937 52 H 0.075 0.925 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.135 -8.665 -13.166 26.365 hybrid contribution 0.720 0.425 1.289 1.536 sum -20.416 -8.240 -11.877 25.015 Atomic orbital electron populations 1.22935 0.79161 1.03811 1.01122 1.87838 1.21774 1.29013 1.95688 1.22402 0.92041 0.84567 1.01922 1.21336 0.93985 0.96990 1.03402 1.22525 0.78985 0.97119 1.02581 1.87950 1.19691 1.28467 1.95833 1.22262 0.87537 0.87253 1.05292 1.20625 0.89278 0.83366 0.75875 1.90705 1.79705 1.24086 1.51662 1.48557 1.06737 1.07066 1.72265 1.22352 0.98038 0.78124 1.03683 1.22675 0.92882 0.97473 1.02569 1.20879 0.96041 0.93923 0.94609 1.22195 0.79507 0.97566 1.00871 1.21727 0.94564 0.97975 1.00438 1.21062 0.98692 0.94778 0.83549 1.44272 1.09706 1.78211 1.01107 1.19474 0.88005 1.33380 0.98383 0.92047 1.25676 0.98756 0.98265 1.01568 1.70147 1.23640 1.41694 1.22181 0.85410 0.79156 0.77908 0.78774 1.21006 1.22030 1.20070 1.20571 0.85583 0.90961 0.97159 1.21777 0.99449 0.98686 0.95041 0.92776 0.88876 0.92954 0.91614 0.91268 0.91563 0.91950 0.91004 0.90438 0.87785 0.86772 0.90253 0.87805 0.90408 0.88649 0.90167 0.93005 0.93362 0.89227 0.93211 0.95373 0.94205 0.96862 0.93677 0.92488 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.23 10.70 -148.98 -1.59 -8.82 16 3 C 0.07 0.83 5.94 71.98 0.43 1.26 16 4 C -0.12 -1.97 5.95 30.59 0.18 -1.78 16 5 C 0.06 0.90 5.94 71.98 0.43 1.33 16 6 O -0.40 -9.36 9.88 -129.94 -1.28 -10.64 16 7 C 0.06 1.02 5.61 71.23 0.40 1.42 16 8 C 0.52 14.50 7.93 87.65 0.69 15.20 16 9 O -0.58 -22.52 16.77 15.98 0.27 -22.26 16 10 N -0.61 -15.08 3.32 -812.59 -2.70 -17.78 16 11 C 0.10 1.80 6.11 86.76 0.53 2.33 16 12 C -0.12 -2.71 4.92 31.56 0.16 -2.55 16 13 C -0.05 -1.55 0.55 -51.93 -0.03 -1.58 16 14 C 0.12 3.35 5.81 86.54 0.50 3.85 16 15 C -0.11 -3.25 4.84 30.41 0.15 -3.10 16 16 C 0.14 5.48 6.24 86.41 0.54 6.02 16 17 N -0.61 -29.29 2.98 -698.50 -2.08 -31.37 16 18 C -0.26 -14.22 9.57 84.03 0.80 -13.42 16 19 H 0.06 3.29 7.89 -2.91 -0.02 3.26 16 20 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 21 N -0.93 -53.85 11.20 21.65 0.24 -53.60 16 22 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.18 8.36 5.01 86.41 0.43 8.79 16 27 C -0.11 -4.04 4.85 30.42 0.15 -3.90 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 2.11 6.17 -2.38 -0.01 2.09 16 42 H 0.09 1.80 7.98 -2.39 -0.02 1.79 16 43 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 44 H 0.05 1.70 7.94 -2.39 -0.02 1.68 16 45 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 47 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 48 H 0.03 1.03 7.62 -2.39 -0.02 1.01 16 49 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 50 H 0.01 0.62 6.55 -2.39 -0.02 0.61 16 51 H 0.04 2.43 6.04 -2.39 -0.01 2.41 16 52 H 0.06 1.95 7.82 -2.39 -0.02 1.93 16 53 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.87 413.39 2.77 -73.10 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.86 Total: 11.36 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 7.03 Total: 13.18 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -4.53 Total: -102.75 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.61 Total: -41.72 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -75.87 2.77 -73.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733292270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.056 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds