Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.50699 * 109.47184 * 270.00097 * 3 2 1 6 6 O 1.21286 * 119.99722 * 355.00184 * 5 3 2 7 7 N 1.34777 * 120.00178 * 175.00129 * 5 3 2 8 8 C 1.46923 * 120.62840 * 359.72281 * 7 5 3 9 9 C 1.52757 * 109.00654 * 233.58299 * 8 7 5 10 10 C 1.53041 * 109.38372 * 305.58507 * 9 8 7 11 11 O 1.42897 * 109.45251 * 301.22846 * 10 9 8 12 12 C 1.52998 * 109.46333 * 181.25916 * 10 9 8 13 13 N 1.46508 * 109.46997 * 59.93294 * 12 10 9 14 14 C 1.36932 * 119.99940 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00478 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99870 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47326 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47349 * 119.99909 * 18 16 14 21 21 H 1.48507 * 109.46833 * 239.99864 * 18 16 14 22 22 C 1.53039 * 109.53557 * 61.24052 * 10 9 8 23 23 C 1.46926 * 120.63340 * 179.97438 * 7 5 3 24 24 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 25 25 C 1.54265 * 110.03396 * 57.90632 * 24 3 2 26 26 C 1.54967 * 104.15866 * 217.13439 * 25 24 3 27 27 C 1.54888 * 102.77697 * 37.88980 * 26 25 24 28 28 C 1.53875 * 110.03278 * 300.68659 * 24 3 2 29 29 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 30 30 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 31 31 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.58636 * 353.41640 * 8 7 5 33 33 H 1.09003 * 109.59035 * 113.83934 * 8 7 5 34 34 H 1.09010 * 109.56751 * 185.55358 * 9 8 7 35 35 H 1.09001 * 109.36341 * 65.50029 * 9 8 7 36 36 H 0.96704 * 114.00002 * 300.06536 * 11 10 9 37 37 H 1.08998 * 109.47763 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.47533 * 299.93849 * 12 10 9 39 39 H 0.97002 * 119.99498 * 0.02562 * 13 12 10 40 40 H 0.96999 * 119.99832 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49675 * 178.68077 * 22 10 9 42 42 H 1.09004 * 109.49707 * 58.58621 * 22 10 9 43 43 H 1.08998 * 109.58990 * 246.16374 * 23 7 5 44 44 H 1.09007 * 109.58572 * 6.58185 * 23 7 5 45 45 H 1.09003 * 110.01105 * 179.30115 * 24 3 2 46 46 H 1.08993 * 110.48454 * 335.78064 * 25 24 3 47 47 H 1.09003 * 110.48159 * 98.43035 * 25 24 3 48 48 H 1.09002 * 110.72287 * 279.57569 * 26 25 24 49 49 H 1.09001 * 110.76569 * 156.22351 * 26 25 24 50 50 H 1.09001 * 110.48631 * 203.40754 * 27 26 25 51 51 H 1.08997 * 110.60280 * 80.81710 * 27 26 25 52 52 H 1.08999 * 110.03490 * 238.57809 * 28 24 3 53 53 H 1.09004 * 110.02826 * 0.02562 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6587 3.0126 -1.6686 8 6 2.9424 3.9391 -0.5642 9 6 2.1721 5.2381 -0.7943 10 6 2.5101 5.7902 -2.1810 11 8 3.9176 6.0196 -2.2718 12 6 1.7637 7.1076 -2.4010 13 7 2.1675 8.0745 -1.3771 14 6 1.6267 9.3325 -1.3721 15 1 0.9028 9.6121 -2.1233 16 6 2.0097 10.2488 -0.4022 17 7 2.8922 9.9083 0.5129 18 14 1.2714 11.9647 -0.3950 19 1 0.3107 12.0950 -1.5199 20 1 0.5634 12.1936 0.8901 21 1 2.3536 12.9698 -0.5500 22 6 2.0881 4.7804 -3.2507 23 6 2.8633 3.4743 -3.0483 24 6 3.3589 1.2633 0.7212 25 6 4.2934 0.2455 0.0352 26 6 5.0702 -0.4057 1.2074 27 6 3.9917 -0.5165 2.3135 28 6 3.1674 0.7795 2.1693 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.6277 3.4914 0.3785 33 1 4.0109 4.1521 -0.5312 34 1 2.4515 5.9678 -0.0342 35 1 1.1021 5.0395 -0.7326 36 1 4.2560 6.6508 -1.6220 37 1 2.0047 7.5013 -3.3885 38 1 0.6900 6.9328 -2.3323 39 1 2.8180 7.8235 -0.7027 40 1 3.1601 10.5487 1.1904 41 1 2.3077 5.1843 -4.2391 42 1 1.0189 4.5860 -3.1660 43 1 3.9252 3.6486 -3.2217 44 1 2.4964 2.7198 -3.7443 45 1 3.8161 2.2528 0.7156 46 1 3.7123 -0.5049 -0.5007 47 1 4.9794 0.7539 -0.6423 48 1 5.8902 0.2357 1.5302 49 1 5.4380 -1.3926 0.9263 50 1 4.4581 -0.5644 3.2976 51 1 3.3612 -1.3901 2.1483 52 1 3.5324 1.5337 2.8664 53 1 2.1136 0.5743 2.3581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733889793.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -145.685443 kcal Electronic energy + Delta-G solvation = -32127.557146 eV Core-core repulsion = 27998.277493 eV Total energy + Delta-G solvation = -4129.279654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.89334 -40.27323 -38.93805 -37.75614 -36.75854 -35.76739 -33.60627 -32.97684 -31.85266 -31.32361 -29.57134 -28.38939 -27.59256 -26.56878 -25.24732 -24.52796 -23.25894 -21.72618 -21.47907 -20.74064 -20.26013 -19.44993 -18.42017 -17.84758 -17.31231 -17.08806 -16.72921 -16.66714 -16.33124 -15.89237 -15.81898 -15.62811 -15.47136 -15.09435 -14.89961 -14.59494 -14.47368 -14.25553 -14.13568 -14.07886 -13.67613 -13.54176 -13.19124 -13.00253 -12.81639 -12.75045 -12.50738 -12.37972 -12.27781 -12.19769 -12.05295 -11.97723 -11.93574 -11.88677 -11.67407 -11.58470 -11.39163 -11.32359 -11.30513 -10.98138 -10.74834 -10.24667 -9.68213 -9.01702 -7.96762 -5.24546 1.47725 1.49303 1.49733 1.57938 1.85689 2.54811 2.73823 3.24152 3.31566 3.41138 3.61806 3.63145 3.65738 3.74731 3.82785 3.88635 3.98874 4.07383 4.22551 4.30642 4.31548 4.40279 4.45610 4.50932 4.54721 4.58981 4.62715 4.67659 4.74468 4.76348 4.80527 4.81628 4.84926 4.87948 4.90419 4.96220 5.01049 5.07068 5.11872 5.14071 5.28465 5.30129 5.34089 5.45052 5.48295 5.50411 5.55571 6.00739 6.25425 6.36235 6.74923 7.09074 7.33971 8.03975 8.30126 9.25864 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.002750 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.197169 B =10178.063527 C =10759.455800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.082 3.918 4 H 0.103 0.897 5 C 0.492 3.508 6 O -0.573 6.573 7 N -0.600 5.600 8 C 0.112 3.888 9 C -0.151 4.151 10 C 0.138 3.862 11 O -0.562 6.562 12 C 0.128 3.872 13 N -0.734 5.734 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.065 4.065 17 N -0.960 5.960 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.294 1.294 22 C -0.111 4.111 23 C 0.122 3.878 24 C -0.092 4.092 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.112 4.112 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.382 0.618 37 H 0.019 0.981 38 H 0.026 0.974 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -20.787 3.339 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.284 6.284 3 C 0.021 3.979 4 H 0.121 0.879 5 C 0.281 3.719 6 O -0.452 6.452 7 N -0.334 5.334 8 C -0.010 4.010 9 C -0.190 4.190 10 C 0.097 3.903 11 O -0.369 6.369 12 C 0.001 3.999 13 N -0.379 5.379 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.258 4.258 17 N -0.611 5.611 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.219 1.219 21 H -0.221 1.221 22 C -0.149 4.149 23 C 0.000 4.000 24 C -0.110 4.110 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.231 0.769 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.212 0.788 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.122 0.878 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.100 0.900 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.127 -21.671 2.300 21.793 hybrid contribution -0.443 1.913 0.312 1.988 sum -0.315 -19.757 2.612 19.932 Atomic orbital electron populations 1.23003 0.79845 1.04101 1.00261 1.87964 1.20910 1.25279 1.94270 1.22170 0.98151 0.86802 0.90804 0.87942 1.21832 0.76016 0.81124 0.92937 1.90653 1.52581 1.54482 1.47528 1.48210 1.64926 1.12396 1.07904 1.21887 1.01018 0.88651 0.89449 1.22385 1.01433 0.97464 0.97725 1.21211 0.81281 0.92760 0.95031 1.86384 1.21832 1.66932 1.61758 1.21431 0.96881 0.89668 0.91882 1.42365 1.51487 1.10590 1.33485 1.19547 1.18436 0.90068 1.09741 0.91291 1.25420 1.00507 1.01812 0.98108 1.69753 1.36659 1.35895 1.18765 0.85177 0.77479 0.80474 0.77209 1.19650 1.21918 1.22118 1.21816 1.00401 0.93728 0.98962 1.21427 1.00582 0.95096 0.82913 1.22166 0.91569 1.01420 0.95887 1.22317 0.97368 0.97928 0.97925 1.22482 0.97837 1.00593 0.94830 1.22291 0.96862 0.97556 0.98849 1.22124 1.01079 0.97914 0.93818 0.91867 0.95286 0.88042 0.87478 0.89791 0.90293 0.90845 0.76878 0.96334 0.95596 0.78815 0.93863 0.89550 0.90060 0.90725 0.90060 0.87819 0.92678 0.92850 0.90697 0.91590 0.90540 0.92173 0.90048 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.81 113.37 1.23 1.65 16 2 O -0.37 -8.35 8.34 -129.99 -1.08 -9.43 16 3 C 0.08 1.70 1.22 29.85 0.04 1.73 16 4 H 0.10 1.73 7.06 -2.39 -0.02 1.71 16 5 C 0.49 13.08 6.45 87.66 0.57 13.64 16 6 O -0.57 -19.65 15.92 15.94 0.25 -19.40 16 7 N -0.60 -14.57 2.98 -819.67 -2.44 -17.01 16 8 C 0.11 2.37 4.70 86.22 0.40 2.77 16 9 C -0.15 -3.97 4.91 30.53 0.15 -3.82 16 10 C 0.14 4.07 0.71 -10.77 -0.01 4.06 16 11 O -0.56 -17.30 11.70 -148.98 -1.74 -19.04 16 12 C 0.13 4.81 5.40 86.38 0.47 5.28 16 13 N -0.73 -33.90 5.07 -343.43 -1.74 -35.64 16 14 C -0.25 -13.04 9.99 84.04 0.84 -12.20 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 16 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 17 N -0.96 -54.63 13.06 21.65 0.28 -54.35 16 18 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 C -0.11 -2.86 5.11 30.68 0.16 -2.71 16 23 C 0.12 3.14 6.20 86.37 0.54 3.67 16 24 C -0.09 -1.61 2.38 -10.07 -0.02 -1.63 16 25 C -0.12 -2.38 5.65 31.70 0.18 -2.20 16 26 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 27 C -0.12 -1.69 6.83 31.67 0.22 -1.47 16 28 C -0.11 -1.60 6.22 31.32 0.19 -1.40 16 29 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.77 4.70 -2.39 -0.01 1.76 16 33 H 0.08 1.75 7.81 -2.39 -0.02 1.73 16 34 H 0.08 2.35 6.82 -2.38 -0.02 2.34 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.38 11.92 7.85 -74.05 -0.58 11.34 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.38 17.69 5.58 -92.71 -0.52 17.17 16 40 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.95 7.81 -2.39 -0.02 1.93 16 44 H 0.08 2.22 7.01 -2.38 -0.02 2.20 16 45 H 0.10 1.63 5.49 -2.39 -0.01 1.62 16 46 H 0.05 1.40 7.15 -2.39 -0.02 1.38 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.07 0.99 7.40 -2.38 -0.02 0.97 16 Total: -1.00 -66.15 401.67 0.99 -65.16 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.19 Total: 40.72 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.63 Total: 2.61 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.90 Total: -107.00 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -2.57 Total: -47.87 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.15 0.99 -65.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733889793.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.526 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds