Wall clock time and date at job start Sat Apr 11 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 O 1.21273 * 120.00140 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.58974 * 359.71835 * 8 6 5 10 10 C 1.52849 * 108.94846 * 234.16934 * 9 8 6 11 11 C 1.52434 * 109.48737 * 306.49321 * 10 9 8 12 12 C 1.53601 * 110.44289 * 296.88589 * 11 10 9 13 13 O 1.43877 * 107.11578 * 239.50354 * 12 11 10 14 14 C 1.44423 * 107.00292 * 26.36625 * 13 12 11 15 15 H 1.09004 * 110.60757 * 78.92432 * 14 13 12 16 16 C 1.52999 * 110.60943 * 201.74051 * 14 13 12 17 17 N 1.46499 * 109.47182 * 298.54309 * 16 14 13 18 18 C 1.36934 * 120.00233 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99872 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00203 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00250 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47469 * 89.99861 * 22 20 18 24 24 H 1.48499 * 109.47165 * 210.00509 * 22 20 18 25 25 H 1.48503 * 109.46765 * 329.99749 * 22 20 18 26 26 C 1.54320 * 110.03963 * 181.80881 * 11 10 9 27 27 C 1.52424 * 110.97815 * 59.74580 * 11 10 9 28 28 C 1.46930 * 120.58997 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 32 32 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 33 33 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 34 34 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 35 35 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 37 37 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 38 38 H 1.09010 * 109.59676 * 353.97695 * 9 8 6 39 39 H 1.08994 * 109.59870 * 114.43826 * 9 8 6 40 40 H 1.09010 * 109.54789 * 186.43204 * 10 9 8 41 41 H 1.09001 * 109.34964 * 66.44336 * 10 9 8 42 42 H 1.08995 * 109.90847 * 358.88031 * 12 11 10 43 43 H 1.08999 * 109.90601 * 119.94465 * 12 11 10 44 44 H 1.08995 * 109.47101 * 58.54518 * 16 14 13 45 45 H 1.09002 * 109.47374 * 178.54586 * 16 14 13 46 46 H 0.97004 * 120.00244 * 0.02562 * 17 16 14 47 47 H 0.97002 * 119.99846 * 180.02562 * 21 20 18 48 48 H 1.08993 * 110.92795 * 216.20917 * 26 11 10 49 49 H 1.08998 * 110.92943 * 339.87587 * 26 11 10 50 50 H 1.09000 * 109.47697 * 180.16667 * 27 11 10 51 51 H 1.08997 * 109.48388 * 60.14135 * 27 11 10 52 52 H 1.09006 * 109.59258 * 245.57899 * 28 8 6 53 53 H 1.08999 * 109.58914 * 6.02487 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6601 2.4632 0.0013 7 8 6.1817 1.3684 0.0013 8 7 6.4241 3.5736 0.0023 9 6 5.8059 4.9065 -0.0027 10 6 6.3697 5.7106 -1.1740 11 6 7.8925 5.7081 -1.1064 12 6 8.3739 6.4084 0.1731 13 8 9.1963 7.5163 -0.2343 14 6 8.7553 7.9073 -1.5528 15 1 7.8468 8.5065 -1.4914 16 6 9.8576 8.6767 -2.2833 17 7 10.1761 9.8979 -1.5394 18 6 11.1404 10.7514 -2.0049 19 1 11.6659 10.5245 -2.9207 20 6 11.4425 11.9082 -1.2997 21 7 10.8024 12.1846 -0.1833 22 14 12.7575 13.0730 -1.9351 23 1 12.1356 14.0794 -2.8326 24 1 13.4031 13.7629 -0.7895 25 1 13.7793 12.3023 -2.6883 26 6 8.4744 6.5547 -2.2580 27 6 8.4394 4.2870 -1.1742 28 6 7.8899 3.4726 0.0029 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8575 0.6435 -0.8891 35 1 3.8567 0.6438 0.8909 36 1 3.8366 3.1234 -0.8887 37 1 3.8358 3.1230 0.8912 38 1 4.7261 4.8083 -0.1148 39 1 6.0336 5.4187 0.9320 40 1 6.0052 6.7366 -1.1211 41 1 6.0467 5.2580 -2.1115 42 1 7.5179 6.7710 0.7422 43 1 8.9554 5.7142 0.7798 44 1 10.7486 8.0531 -2.3566 45 1 9.5151 8.9399 -3.2841 46 1 9.7043 10.1016 -0.7166 47 1 11.0132 12.9932 0.3092 48 1 9.3965 6.1145 -2.6374 49 1 7.7448 6.6770 -3.0585 50 1 9.5278 4.3135 -1.1210 51 1 8.1324 3.8236 -2.1118 52 1 8.2834 3.8705 0.9384 53 1 8.1844 2.4288 -0.1054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734208136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:47 Heat of formation + Delta-G solvation = -149.051469 kcal Electronic energy + Delta-G solvation = -30084.461092 eV Core-core repulsion = 25955.035477 eV Total energy + Delta-G solvation = -4129.425615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87626 -40.53433 -38.87230 -37.95867 -36.35212 -34.82515 -34.29574 -33.49530 -32.30475 -31.08609 -29.13881 -28.06440 -26.78907 -26.58927 -25.07407 -24.42664 -23.83409 -22.71359 -22.04204 -20.82467 -19.36636 -19.13129 -18.23376 -17.41346 -17.39078 -17.21674 -16.70320 -16.67560 -16.54413 -16.27223 -16.14610 -15.72000 -15.32814 -15.17490 -15.09974 -14.65771 -14.47086 -14.39822 -14.16560 -13.89156 -13.70412 -13.40273 -13.09909 -12.99397 -12.99179 -12.80639 -12.75344 -12.59606 -12.44273 -12.27235 -12.18073 -12.08374 -11.95558 -11.90819 -11.88136 -11.47390 -11.37944 -11.26606 -10.96213 -10.79400 -10.59248 -10.49877 -9.64252 -8.99094 -7.93453 -5.22766 1.47220 1.49860 1.58251 1.62294 1.95672 2.56361 2.86446 2.98382 3.39716 3.42063 3.50313 3.63883 3.75800 3.93085 3.99296 4.05788 4.08016 4.16385 4.19309 4.26939 4.31176 4.38405 4.39495 4.47874 4.50750 4.53557 4.56063 4.59494 4.60661 4.63735 4.69576 4.74537 4.77846 4.83001 4.88146 4.91507 4.97249 5.00216 5.04362 5.10135 5.12526 5.21026 5.24862 5.30785 5.31417 5.48098 5.55830 6.13007 6.27132 6.28332 6.41488 7.16727 7.34156 8.10575 8.34364 9.30215 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.001694 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.117220 B =16527.374860 C =16866.003572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.129 4.129 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.119 4.119 11 C -0.081 4.081 12 C 0.047 3.953 13 O -0.398 6.398 14 C 0.077 3.923 15 H 0.068 0.932 16 C 0.154 3.846 17 N -0.742 5.742 18 C -0.250 4.250 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.270 1.270 26 C -0.127 4.127 27 C -0.109 4.109 28 C 0.109 3.891 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.043 0.957 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.073 0.927 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -21.965 -0.897 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.300 3.700 7 O -0.471 6.471 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.157 4.157 11 C -0.081 4.081 12 C -0.029 4.029 13 O -0.318 6.318 14 C 0.020 3.980 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.385 5.385 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.014 4.014 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.060 0.940 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.658 -22.558 -0.897 31.284 hybrid contribution 0.733 0.975 0.156 1.230 sum -20.924 -21.583 -0.741 30.070 Atomic orbital electron populations 1.22913 0.79386 1.03653 1.01063 1.87845 1.21601 1.29453 1.95679 1.22617 0.92708 0.84341 1.01846 1.21154 0.93558 0.96432 1.02790 1.21608 0.89121 0.98897 1.07157 1.21254 0.90982 0.83133 0.74648 1.90692 1.76085 1.28192 1.52143 1.48215 1.06471 1.06806 1.72514 1.21999 0.99728 0.81132 0.99245 1.21852 0.92268 1.01737 0.99806 1.21424 0.97140 0.95258 0.94304 1.23470 0.94918 0.87981 0.96550 1.89057 1.58695 1.50425 1.33600 1.23318 0.96110 0.95886 0.82700 0.91380 1.20924 0.95173 0.86824 0.94288 1.42478 1.45221 1.22596 1.28188 1.19679 1.12346 1.00591 1.05508 0.90608 1.25612 1.02792 1.00607 0.97844 1.69848 1.46280 1.27465 1.18386 0.85101 0.78788 0.78797 0.76821 1.21017 1.22178 1.19515 1.23145 1.02304 0.92994 0.98059 1.21783 1.00672 0.93447 0.98853 1.21617 0.79902 1.01169 0.98722 0.89108 0.92926 0.92915 0.91496 0.91440 0.92541 0.92594 0.85746 0.85857 0.86106 0.90338 0.89234 0.89792 0.91397 0.90059 0.96592 0.93974 0.79355 0.94029 0.90596 0.87926 0.90716 0.90842 0.90901 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.43 -6.88 10.70 -148.98 -1.59 -8.48 16 3 C 0.06 0.65 5.94 71.98 0.43 1.08 16 4 C -0.10 -1.44 4.87 30.59 0.15 -1.29 16 5 C -0.13 -1.19 4.04 29.85 0.12 -1.07 16 6 C 0.51 9.11 7.70 87.66 0.67 9.79 16 7 O -0.59 -16.31 15.39 -3.01 -0.05 -16.36 16 8 N -0.61 -9.13 2.97 -819.28 -2.43 -11.56 16 9 C 0.10 0.94 6.02 86.25 0.52 1.46 16 10 C -0.12 -1.39 4.57 30.36 0.14 -1.25 16 11 C -0.08 -1.44 0.61 -51.91 -0.03 -1.47 16 12 C 0.05 1.12 6.16 72.18 0.44 1.56 16 13 O -0.40 -14.27 11.10 -148.98 -1.65 -15.92 16 14 C 0.08 2.47 3.42 31.32 0.11 2.57 16 15 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 16 C 0.15 6.33 6.02 86.38 0.52 6.85 16 17 N -0.74 -39.66 5.53 -343.47 -1.90 -41.56 16 18 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 22 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.13 -2.76 5.67 31.76 0.18 -2.58 16 27 C -0.11 -1.89 4.63 30.51 0.14 -1.75 16 28 C 0.11 1.93 6.13 86.40 0.53 2.46 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.12 0.49 7.69 -2.39 -0.02 0.47 16 37 H 0.12 0.52 7.94 -2.39 -0.02 0.50 16 38 H 0.12 0.37 5.92 -2.38 -0.01 0.35 16 39 H 0.08 0.74 6.90 -2.39 -0.02 0.72 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 1.42 6.61 -2.39 -0.02 1.40 16 43 H 0.08 1.85 6.44 -2.39 -0.02 1.84 16 44 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.37 21.59 7.62 -92.71 -0.71 20.89 16 47 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 48 H 0.08 1.74 7.75 -2.39 -0.02 1.72 16 49 H 0.10 1.76 7.83 -2.39 -0.02 1.74 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.07 1.25 6.80 -2.38 -0.02 1.24 16 53 H 0.08 1.66 7.00 -2.39 -0.02 1.64 16 Total: -1.00 -80.25 410.44 1.34 -78.91 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.18 Total: 26.52 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 6.48 Total: 0.20 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -4.05 Total: -113.83 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -3.29 Total: -40.76 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -80.25 1.34 -78.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734208136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.142 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds