Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 113.99909 * 2 1 4 4 C 1.53001 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.54170 * 292.90289 * 4 3 2 6 6 O 1.21282 * 119.99463 * 239.01980 * 5 4 3 7 7 N 1.34774 * 119.99973 * 59.01464 * 5 4 3 8 8 C 1.46920 * 120.63251 * 5.94877 * 7 5 4 9 9 C 1.53196 * 108.77221 * 126.36805 * 8 7 5 10 10 C 1.53039 * 109.31311 * 54.63988 * 9 8 7 11 11 C 1.53045 * 109.53432 * 298.63286 * 10 9 8 12 12 C 1.46931 * 120.62699 * 185.92946 * 7 5 4 13 13 H 1.08998 * 109.58501 * 113.84741 * 12 7 5 14 14 C 1.52997 * 109.58775 * 353.41905 * 12 7 5 15 15 N 1.46497 * 109.47485 * 68.91499 * 14 12 7 16 16 C 1.36937 * 120.00338 * 184.98934 * 15 14 12 17 17 H 1.07998 * 119.99984 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00047 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99724 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00103 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47375 * 89.99255 * 20 18 16 22 22 H 1.48500 * 109.47144 * 209.99740 * 20 18 16 23 23 H 1.48503 * 109.47021 * 329.99560 * 20 18 16 24 24 C 1.53177 * 109.54609 * 53.07934 * 4 3 2 25 25 C 1.53280 * 109.06177 * 176.85190 * 24 4 3 26 26 O 1.42897 * 109.46353 * 302.44227 * 25 24 4 27 27 C 1.42905 * 114.09335 * 61.15975 * 26 25 24 28 28 C 1.53091 * 109.41584 * 298.83845 * 27 26 25 29 29 H 1.09005 * 109.47147 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47077 * 299.99970 * 1 2 3 31 31 H 1.08995 * 109.47450 * 59.99965 * 1 2 3 32 32 H 1.08999 * 109.47219 * 59.99832 * 3 2 1 33 33 H 1.09000 * 109.46800 * 299.99874 * 3 2 1 34 34 H 1.08995 * 109.58973 * 246.15286 * 8 7 5 35 35 H 1.08996 * 109.58519 * 6.58449 * 8 7 5 36 36 H 1.09002 * 109.49433 * 174.58574 * 9 8 7 37 37 H 1.08998 * 109.49762 * 294.65419 * 9 8 7 38 38 H 1.08996 * 109.46095 * 58.65088 * 10 9 8 39 39 H 1.09000 * 109.45841 * 178.62955 * 10 9 8 40 40 H 1.09005 * 109.49574 * 301.41280 * 11 10 9 41 41 H 1.09003 * 109.49527 * 181.31693 * 11 10 9 42 42 H 1.09004 * 109.47184 * 188.91714 * 14 12 7 43 43 H 1.09002 * 109.47332 * 308.91207 * 14 12 7 44 44 H 0.97006 * 119.99849 * 4.98965 * 15 14 12 45 45 H 0.96998 * 119.99457 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.52367 * 296.84409 * 24 4 3 47 47 H 1.08995 * 109.52296 * 57.02947 * 24 4 3 48 48 H 1.09009 * 109.45231 * 182.44643 * 25 24 4 49 49 H 1.08997 * 109.45680 * 62.44644 * 25 24 4 50 50 H 1.09004 * 109.47876 * 178.86126 * 27 26 25 51 51 H 1.08999 * 109.49163 * 58.83556 * 27 26 25 52 52 H 1.08992 * 109.52731 * 297.70819 * 28 27 26 53 53 H 1.09002 * 109.52127 * 177.51568 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9948 0.5937 1.3073 6 8 4.7588 1.2128 2.0173 7 7 3.5567 -0.6227 1.6880 8 6 2.7365 -1.4398 0.7835 9 6 3.3881 -2.8185 0.6374 10 6 3.5937 -3.4308 2.0248 11 6 4.5292 -2.5388 2.8442 12 6 3.8906 -1.1569 3.0154 13 1 2.9831 -1.2452 3.6126 14 6 4.8777 -0.2185 3.7125 15 7 4.2024 1.0368 4.0507 16 6 4.9149 2.0734 4.5919 17 1 5.9748 1.9657 4.7691 18 6 4.2751 3.2631 4.9118 19 7 4.9602 4.2596 5.4316 20 14 2.4421 3.4497 4.6048 21 1 1.6913 3.0108 5.8085 22 1 2.1305 4.8731 4.3186 23 1 2.0472 2.6133 3.4430 24 6 3.9774 0.2800 -1.1550 25 6 5.5089 0.2299 -1.1937 26 8 6.0252 1.5549 -1.3342 27 6 5.6818 2.4319 -0.2595 28 6 4.1592 2.5718 -0.1835 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8465 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.7349 -1.5512 1.1987 35 1 2.6782 -0.9579 -0.1925 36 1 2.7405 -3.4661 0.0463 37 1 4.3517 -2.7145 0.1386 38 1 2.6324 -3.5116 2.5321 39 1 4.0349 -4.4222 1.9224 40 1 5.4824 -2.4374 2.3251 41 1 4.6939 -2.9873 3.8240 42 1 5.2456 -0.6901 4.6238 43 1 5.7155 -0.0124 3.0464 44 1 3.2505 1.1337 3.8912 45 1 4.5130 5.0907 5.6555 46 1 3.5816 -0.7241 -1.0029 47 1 3.6025 0.6815 -2.0965 48 1 5.8310 -0.3774 -2.0397 49 1 5.8812 -0.2092 -0.2681 50 1 6.1285 3.4110 -0.4324 51 1 6.0565 2.0219 0.6784 52 1 3.7880 3.0194 -1.1053 53 1 3.8934 3.2051 0.6629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752827390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -47.933050 kcal Electronic energy + Delta-G solvation = -35076.235522 eV Core-core repulsion = 30951.194731 eV Total energy + Delta-G solvation = -4125.040792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50047 -39.89181 -39.04063 -37.98070 -36.52582 -35.13273 -33.68535 -33.54730 -32.18658 -31.62905 -29.23909 -27.98754 -27.01125 -25.65702 -25.10813 -24.30007 -23.94003 -23.12013 -22.23459 -21.20419 -20.03388 -18.97972 -17.99825 -17.64548 -17.28951 -16.88619 -16.84801 -16.65309 -16.60026 -16.10534 -15.89597 -15.73580 -15.33271 -15.15418 -14.94668 -14.74846 -14.56264 -14.33280 -14.01718 -13.76534 -13.64826 -13.39820 -13.28782 -13.16922 -12.99267 -12.94505 -12.83022 -12.74244 -12.28771 -12.24527 -12.12141 -11.96438 -11.81138 -11.67360 -11.50905 -11.39822 -11.34522 -10.94723 -10.76735 -10.59740 -10.27948 -9.58575 -9.37763 -8.81703 -7.93115 -5.15927 1.25242 1.31044 1.37718 1.95512 2.20762 2.50292 2.71613 2.93184 3.37969 3.47357 3.56016 3.66252 3.72139 3.84940 4.00362 4.06208 4.11910 4.23187 4.29124 4.31512 4.35605 4.36740 4.40838 4.44539 4.56785 4.58256 4.64419 4.66288 4.71381 4.73793 4.81155 4.86263 4.91213 4.94409 4.98768 5.03187 5.05002 5.10215 5.16730 5.18303 5.20042 5.28452 5.33202 5.48775 5.60265 5.81331 5.95937 6.09136 6.22742 6.28847 6.77686 7.17388 7.64403 7.95256 8.14979 9.31067 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.006267 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.497497 B = 4466.893065 C = 5021.579577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.359 6.359 3 C 0.065 3.935 4 C -0.075 4.075 5 C 0.481 3.519 6 O -0.501 6.501 7 N -0.604 5.604 8 C 0.091 3.909 9 C -0.138 4.138 10 C -0.111 4.111 11 C -0.119 4.119 12 C 0.143 3.857 13 H 0.062 0.938 14 C 0.168 3.832 15 N -0.720 5.720 16 C -0.175 4.175 17 H 0.042 0.958 18 C -0.077 4.077 19 N -0.996 5.996 20 Si 0.955 3.045 21 H -0.283 1.283 22 H -0.300 1.300 23 H -0.267 1.267 24 C -0.148 4.148 25 C 0.056 3.944 26 O -0.394 6.394 27 C 0.059 3.941 28 C -0.122 4.122 29 H 0.108 0.892 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.010 0.990 43 H 0.031 0.969 44 H 0.355 0.645 45 H 0.251 0.749 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.122 0.878 49 H 0.026 0.974 50 H 0.092 0.908 51 H 0.046 0.954 52 H 0.098 0.902 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -17.926 -19.596 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.279 6.279 3 C -0.012 4.012 4 C -0.078 4.078 5 C 0.267 3.733 6 O -0.373 6.373 7 N -0.340 5.340 8 C -0.028 4.028 9 C -0.176 4.176 10 C -0.148 4.148 11 C -0.158 4.158 12 C 0.039 3.961 13 H 0.080 0.920 14 C 0.042 3.958 15 N -0.363 5.363 16 C -0.307 4.307 17 H 0.061 0.939 18 C -0.266 4.266 19 N -0.651 5.651 20 Si 0.785 3.215 21 H -0.210 1.210 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.184 4.184 25 C -0.020 4.020 26 O -0.313 6.313 27 C -0.018 4.018 28 C -0.160 4.160 29 H 0.126 0.874 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.049 0.951 44 H 0.187 0.813 45 H 0.059 0.941 46 H 0.139 0.861 47 H 0.118 0.882 48 H 0.140 0.860 49 H 0.045 0.955 50 H 0.111 0.889 51 H 0.065 0.935 52 H 0.117 0.883 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.771 -17.621 -19.288 27.892 hybrid contribution -1.057 1.305 1.007 1.958 sum -10.827 -16.316 -18.281 26.789 Atomic orbital electron populations 1.23030 0.82152 1.04105 1.00178 1.88943 1.19865 1.23985 1.95133 1.22409 0.90846 0.87011 1.00924 1.20918 0.95327 0.97107 0.94467 1.20788 0.82942 0.81654 0.87880 1.91102 1.33674 1.60683 1.51890 1.47938 1.53344 1.16979 1.15704 1.23078 0.92575 0.90444 0.96686 1.22125 1.01653 0.96467 0.97359 1.21473 0.99321 0.98448 0.95600 1.21840 0.99157 0.93224 1.01576 1.21371 0.97154 0.93833 0.83734 0.91975 1.20881 0.95372 0.84614 0.94950 1.42468 1.06419 1.12529 1.74916 1.18833 0.92365 0.92223 1.27234 0.93947 1.25255 1.01696 0.95974 1.03636 1.69891 1.36433 1.05277 1.53474 0.85375 0.82113 0.76050 0.77926 1.21015 1.22678 1.19326 1.22791 0.96404 1.01842 0.97373 1.22756 0.93413 0.83934 1.01901 1.87843 1.75724 1.22201 1.45540 1.22605 0.94491 0.94453 0.90226 1.21867 0.96520 0.95116 1.02519 0.87414 0.95469 0.92641 0.95590 0.89775 0.91326 0.82858 0.88414 0.92149 0.91513 0.90192 0.92391 0.90406 0.97245 0.95077 0.81317 0.94061 0.86061 0.88210 0.85997 0.95510 0.88938 0.93548 0.88334 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.69 113.37 1.21 1.22 16 2 O -0.36 -6.58 4.16 -148.98 -0.62 -7.20 16 3 C 0.06 1.51 4.82 71.98 0.35 1.86 16 4 C -0.07 -2.04 0.50 -52.81 -0.03 -2.07 16 5 C 0.48 16.79 4.72 87.66 0.41 17.20 16 6 O -0.50 -23.02 7.23 -3.03 -0.02 -23.04 16 7 N -0.60 -17.50 2.96 -795.57 -2.36 -19.86 16 8 C 0.09 1.78 3.40 86.36 0.29 2.07 16 9 C -0.14 -2.03 5.92 30.67 0.18 -1.85 16 10 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 11 C -0.12 -2.78 5.36 30.67 0.16 -2.61 16 12 C 0.14 4.49 2.93 44.97 0.13 4.62 16 13 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 14 C 0.17 7.23 4.87 86.38 0.42 7.65 16 15 N -0.72 -37.20 3.10 -343.45 -1.06 -38.26 16 16 C -0.17 -10.93 9.64 84.03 0.81 -10.12 16 17 H 0.04 2.96 8.06 -2.91 -0.02 2.94 16 18 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 19 N -1.00 -68.81 13.97 21.65 0.30 -68.50 16 20 Si 0.96 50.31 27.74 68.60 1.90 52.22 16 21 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 23 H -0.27 -13.12 6.52 99.48 0.65 -12.47 16 24 C -0.15 -2.95 4.52 30.75 0.14 -2.81 16 25 C 0.06 1.35 6.62 72.08 0.48 1.83 16 26 O -0.39 -11.97 10.77 -148.98 -1.60 -13.57 16 27 C 0.06 2.01 6.55 72.01 0.47 2.49 16 28 C -0.12 -3.79 4.56 30.68 0.14 -3.65 16 29 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.03 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.32 6.89 -2.39 -0.02 1.30 16 35 H 0.16 2.70 1.53 -80.64 -0.12 2.58 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.01 0.43 8.13 -2.38 -0.02 0.41 16 43 H 0.03 1.50 6.34 -2.39 -0.02 1.49 16 44 H 0.35 17.97 5.34 -92.70 -0.49 17.48 16 45 H 0.25 16.54 8.31 -92.71 -0.77 15.77 16 46 H 0.12 1.98 4.23 -2.39 -0.01 1.97 16 47 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.03 0.77 7.38 -2.39 -0.02 0.75 16 50 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 51 H 0.05 1.98 5.77 -2.39 -0.01 1.97 16 52 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 Total: -1.00 -81.53 377.41 2.59 -78.94 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.23 Total: 29.51 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.82 Total: 9.77 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -3.12 Total: -126.62 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.25 Total: -43.81 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.90 Total: 52.22 kcal Total: -81.53 2.59 -78.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752827390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.007 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds