Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00175 * 2 1 4 4 C 1.53005 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.54212 * 300.00246 * 4 3 2 6 6 O 1.21285 * 119.99477 * 239.99462 * 5 4 3 7 7 N 1.34772 * 120.00361 * 59.99656 * 5 4 3 8 8 C 1.46498 * 120.00145 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46963 * 175.55850 * 8 7 5 10 10 N 1.46501 * 110.01934 * 301.52973 * 9 8 7 11 11 C 1.36936 * 119.99578 * 300.55799 * 10 9 8 12 12 H 1.08001 * 120.00122 * 355.89468 * 11 10 9 13 13 C 1.38811 * 120.00009 * 175.90169 * 11 10 9 14 14 N 1.31626 * 119.99709 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00474 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47106 * 59.99863 * 15 13 11 17 17 H 1.48497 * 109.47551 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46942 * 300.00167 * 15 13 11 19 19 C 1.54271 * 110.03123 * 180.13849 * 9 8 7 20 20 C 1.54965 * 104.15865 * 217.13732 * 19 9 8 21 21 C 1.54883 * 102.78032 * 37.88934 * 20 19 9 22 22 C 1.53876 * 110.03454 * 62.92189 * 9 8 7 23 23 C 1.53181 * 109.53804 * 60.17825 * 4 3 2 24 24 C 1.53284 * 109.05742 * 176.85323 * 23 4 3 25 25 O 1.42904 * 109.46244 * 302.44151 * 24 23 4 26 26 C 1.42905 * 114.09675 * 61.16020 * 25 24 23 27 27 C 1.53092 * 109.41431 * 298.84555 * 26 25 24 28 28 H 1.09003 * 109.47076 * 59.99880 * 1 2 3 29 29 H 1.08995 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47075 * 299.99950 * 1 2 3 31 31 H 1.09001 * 109.47404 * 59.99872 * 3 2 1 32 32 H 1.09000 * 109.47184 * 300.00164 * 3 2 1 33 33 H 0.96997 * 119.99685 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47257 * 295.55582 * 8 7 5 35 35 H 1.09003 * 109.47194 * 55.56039 * 8 7 5 36 36 H 0.96998 * 119.99968 * 120.55300 * 10 9 8 37 37 H 0.97004 * 119.99899 * 180.02562 * 14 13 11 38 38 H 1.08997 * 110.48186 * 335.78185 * 19 9 8 39 39 H 1.08999 * 110.48847 * 98.42792 * 19 9 8 40 40 H 1.09000 * 110.72208 * 279.56937 * 20 19 9 41 41 H 1.09003 * 110.76600 * 156.22333 * 20 19 9 42 42 H 1.09004 * 110.48941 * 203.40767 * 21 20 19 43 43 H 1.08996 * 110.49118 * 80.76227 * 21 20 19 44 44 H 1.08997 * 110.03452 * 238.56623 * 22 9 8 45 45 H 1.08998 * 110.03351 * 359.97438 * 22 9 8 46 46 H 1.08996 * 109.52375 * 296.84200 * 23 4 3 47 47 H 1.08996 * 109.52341 * 57.03623 * 23 4 3 48 48 H 1.09007 * 109.45759 * 182.45023 * 24 23 4 49 49 H 1.09004 * 109.47125 * 62.44931 * 24 23 4 50 50 H 1.09000 * 109.48226 * 178.85696 * 26 25 24 51 51 H 1.09004 * 109.48695 * 58.82740 * 26 25 24 52 52 H 1.09000 * 109.51875 * 297.69759 * 27 26 25 53 53 H 1.09003 * 109.57278 * 177.54354 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9814 0.4371 1.2308 6 8 4.7233 0.9702 2.0286 7 7 3.5559 -0.8237 1.4446 8 6 3.9899 -1.5505 2.6402 9 6 3.2823 -2.9058 2.6980 10 7 1.8301 -2.7130 2.7156 11 6 1.2475 -1.9909 3.7227 12 1 1.8493 -1.6199 4.5391 13 6 -0.1167 -1.7359 3.6943 14 7 -0.8501 -2.1879 2.6992 15 14 -0.9118 -0.7515 5.0685 16 1 -0.2957 0.5983 5.1308 17 1 -2.3671 -0.6192 4.8047 18 1 -0.7042 -1.4505 6.3622 19 6 3.7276 -3.6813 3.9551 20 6 3.7999 -5.1561 3.4849 21 6 4.3629 -5.0302 2.0475 22 6 3.6855 -3.7632 1.4855 23 6 3.9900 0.4282 -1.2515 24 6 5.5219 0.3822 -1.2799 25 8 6.0389 1.7141 -1.2512 26 6 5.6837 2.4527 -0.0805 27 6 4.1602 2.5831 -0.0039 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 2.9628 -1.2501 0.8063 34 1 5.0681 -1.7051 2.6001 35 1 3.7386 -0.9713 3.5287 36 1 1.2814 -3.0969 2.0138 37 1 -1.8034 -2.0094 2.6792 38 1 4.7075 -3.3385 4.2874 39 1 2.9928 -3.5698 4.7524 40 1 2.8073 -5.6062 3.4730 41 1 4.4780 -5.7303 4.1163 42 1 4.0915 -5.9031 1.4536 43 1 5.4454 -4.9055 2.0712 44 1 2.8007 -4.0366 0.9107 45 1 4.3850 -3.2136 0.8557 46 1 3.5933 -0.5867 -1.2280 47 1 3.6249 0.9426 -2.1404 48 1 5.8533 -0.1168 -2.1906 49 1 5.8850 -0.1676 -0.4115 50 1 6.1316 3.4453 -0.1271 51 1 6.0487 1.9303 0.8038 52 1 3.7985 3.1409 -0.8676 53 1 3.8842 3.1083 0.9106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753664418.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -145.198440 kcal Electronic energy + Delta-G solvation = -33664.053749 eV Core-core repulsion = 29534.795214 eV Total energy + Delta-G solvation = -4129.258536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94382 -40.04341 -38.83717 -38.60193 -35.48781 -35.20228 -34.97184 -32.40583 -31.92822 -29.61233 -29.47977 -28.94839 -26.91550 -26.26799 -25.04318 -24.52002 -23.90466 -22.78663 -21.50269 -20.47378 -19.82485 -18.83984 -17.92755 -17.42095 -17.39710 -17.16418 -16.86497 -16.63160 -16.32092 -16.09803 -16.02449 -15.68333 -15.47047 -15.34259 -15.13139 -14.74112 -14.44681 -14.18702 -14.02153 -13.54789 -13.33860 -13.23329 -13.17159 -13.12815 -12.91825 -12.83491 -12.44225 -12.37259 -12.31927 -12.16563 -12.12313 -11.86886 -11.71022 -11.61138 -11.52781 -11.47648 -11.34577 -11.30921 -10.87210 -10.72600 -10.52379 -10.29103 -9.76992 -8.83833 -7.81339 -5.04418 1.42075 1.44556 1.48191 1.69915 2.40847 2.59728 2.73473 2.96312 3.47106 3.57687 3.62293 3.78920 3.83829 3.91772 3.95398 4.05625 4.07970 4.20196 4.27834 4.35376 4.39836 4.46848 4.54308 4.57855 4.61217 4.65820 4.67736 4.69111 4.71941 4.77900 4.80117 4.86987 4.88079 4.99000 5.04721 5.06976 5.08844 5.16008 5.16351 5.20239 5.21182 5.28666 5.42670 5.52841 5.62103 5.66525 5.77360 6.22370 6.24253 6.40243 6.81408 7.43186 7.49010 8.21541 8.48296 9.39353 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.005265 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.273871 B = 5316.955333 C = 6812.565213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.391 6.391 3 C 0.075 3.925 4 C -0.073 4.073 5 C 0.513 3.487 6 O -0.591 6.591 7 N -0.682 5.682 8 C 0.125 3.875 9 C 0.186 3.814 10 N -0.705 5.705 11 C -0.211 4.211 12 H 0.052 0.948 13 C -0.048 4.048 14 N -0.941 5.941 15 Si 0.935 3.065 16 H -0.299 1.299 17 H -0.294 1.294 18 H -0.289 1.289 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.130 4.130 24 C 0.058 3.942 25 O -0.391 6.391 26 C 0.054 3.946 27 C -0.123 4.123 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.014 0.986 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.412 0.588 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.377 0.623 37 H 0.246 0.754 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.031 0.969 50 H 0.111 0.889 51 H 0.051 0.949 52 H 0.102 0.898 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 1.981 -11.274 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.310 6.310 3 C -0.003 4.003 4 C -0.077 4.077 5 C 0.300 3.700 6 O -0.474 6.474 7 N -0.332 5.332 8 C -0.001 4.001 9 C 0.095 3.905 10 N -0.345 5.345 11 C -0.344 4.344 12 H 0.070 0.930 13 C -0.242 4.242 14 N -0.592 5.592 15 Si 0.767 3.233 16 H -0.227 1.227 17 H -0.221 1.221 18 H -0.216 1.216 19 C -0.172 4.172 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.167 4.167 24 C -0.019 4.019 25 O -0.310 6.310 26 C -0.022 4.022 27 C -0.161 4.161 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.251 0.749 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.210 0.790 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.120 0.880 48 H 0.139 0.861 49 H 0.049 0.951 50 H 0.129 0.871 51 H 0.069 0.931 52 H 0.120 0.880 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.716 2.320 -10.717 15.332 hybrid contribution -1.952 0.620 1.403 2.482 sum 8.764 2.940 -9.314 13.123 Atomic orbital electron populations 1.22495 0.79445 1.02966 0.98719 1.87694 1.20895 1.27055 1.95313 1.22484 0.90823 0.85855 1.01093 1.20967 0.95111 0.97403 0.94173 1.20779 0.79817 0.81959 0.87471 1.90572 1.39225 1.68604 1.48950 1.45843 1.48652 1.14007 1.24737 1.21740 0.97046 0.94262 0.87080 1.20668 0.84018 0.90988 0.94840 1.42462 1.00774 1.62273 1.29011 1.19021 0.90863 1.24121 1.00363 0.93021 1.24948 0.97060 1.02834 0.99363 1.69714 1.05099 1.51807 1.32533 0.85823 0.77519 0.78982 0.80928 1.22664 1.22050 1.21582 1.22785 0.99868 0.96475 0.98042 1.22353 1.00353 0.95324 0.96888 1.22288 1.00123 0.96934 0.95540 1.22345 1.00397 0.96452 0.96386 1.22202 0.96647 1.01812 0.96077 1.22730 0.92673 0.83859 1.02611 1.87862 1.74889 1.25969 1.42308 1.22763 0.93927 0.97495 0.88023 1.21960 0.96781 0.93641 1.03764 0.92251 0.90129 0.96728 0.95147 0.89422 0.74881 0.92264 0.95615 0.78984 0.94514 0.91660 0.93516 0.93133 0.90508 0.90610 0.90335 0.91975 0.90918 0.89665 0.88029 0.86069 0.95071 0.87149 0.93124 0.87977 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.97 11.01 113.37 1.25 3.22 16 2 O -0.39 -12.76 7.62 -148.98 -1.13 -13.90 16 3 C 0.07 2.10 4.80 71.98 0.35 2.45 16 4 C -0.07 -2.03 0.53 -52.81 -0.03 -2.06 16 5 C 0.51 18.37 5.14 87.66 0.45 18.82 16 6 O -0.59 -24.59 13.85 -3.04 -0.04 -24.63 16 7 N -0.68 -24.56 4.57 -463.07 -2.11 -26.68 16 8 C 0.13 4.75 4.07 86.38 0.35 5.10 16 9 C 0.19 6.70 0.68 4.33 0.00 6.70 16 10 N -0.71 -31.51 4.87 -300.06 -1.46 -32.97 16 11 C -0.21 -10.95 8.35 84.03 0.70 -10.25 16 12 H 0.05 2.80 7.19 -2.91 -0.02 2.77 16 13 C -0.05 -2.60 5.50 84.86 0.47 -2.13 16 14 N -0.94 -51.44 13.06 21.65 0.28 -51.16 16 15 Si 0.93 45.74 29.55 68.60 2.03 47.76 16 16 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 17 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 19 C -0.13 -4.50 5.94 31.70 0.19 -4.31 16 20 C -0.11 -3.14 6.91 31.91 0.22 -2.92 16 21 C -0.11 -2.68 6.83 31.67 0.22 -2.47 16 22 C -0.12 -3.41 5.71 31.32 0.18 -3.23 16 23 C -0.13 -2.90 4.68 30.75 0.14 -2.76 16 24 C 0.06 1.32 6.62 72.08 0.48 1.80 16 25 O -0.39 -9.98 10.77 -148.98 -1.60 -11.59 16 26 C 0.05 1.40 6.55 72.01 0.47 1.87 16 27 C -0.12 -3.06 4.56 30.68 0.14 -2.92 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.41 14.64 5.34 -92.71 -0.50 14.14 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 1.16 7.43 -2.39 -0.02 1.15 16 36 H 0.38 18.05 7.27 -92.71 -0.67 17.37 16 37 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 38 H 0.06 2.02 7.85 -2.39 -0.02 2.01 16 39 H 0.05 1.89 7.07 -2.39 -0.02 1.87 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.90 7.44 -2.39 -0.02 1.89 16 45 H 0.07 1.92 7.47 -2.39 -0.02 1.90 16 46 H 0.08 1.95 7.16 -2.39 -0.02 1.93 16 47 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.03 0.83 7.38 -2.39 -0.02 0.81 16 50 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 51 H 0.05 1.61 5.81 -2.38 -0.01 1.60 16 52 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 53 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -62.21 401.23 1.26 -60.94 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.27 Total: 45.30 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.58 Total: 6.92 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.29 Total: -110.81 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.78 Total: -50.12 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -62.21 1.26 -60.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753664418.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.256 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds