Wall clock time and date at job start Sat Apr 11 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00384 * 2 1 4 4 C 1.52996 * 109.46914 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46952 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47113 * 180.02562 * 5 4 3 7 7 C 1.42903 * 113.99629 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00161 * 179.97438 * 9 8 7 12 12 C 1.46600 * 119.68168 * 0.02562 * 11 9 8 13 13 C 1.53954 * 110.57453 * 132.14604 * 12 11 9 14 14 C 1.51518 * 107.34512 * 51.05840 * 13 12 11 15 15 H 1.09005 * 109.27989 * 53.69433 * 14 13 12 16 16 C 1.55368 * 107.79183 * 295.13963 * 14 13 12 17 17 H 1.08997 * 111.50936 * 308.81541 * 16 14 13 18 18 C 1.53421 * 100.36002 * 190.35528 * 16 14 13 19 19 C 1.55291 * 101.42018 * 39.94940 * 18 16 14 20 20 N 1.45467 * 117.35293 * 178.76674 * 14 13 12 21 21 C 1.36938 * 126.40166 * 329.34005 * 20 14 13 22 22 H 1.07998 * 120.00376 * 0.02562 * 21 20 14 23 23 C 1.38813 * 119.99715 * 180.02562 * 21 20 14 24 24 N 1.31618 * 120.00115 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46949 * 89.99547 * 25 23 21 27 27 H 1.48498 * 109.47101 * 209.99472 * 25 23 21 28 28 H 1.48499 * 109.47033 * 329.99680 * 25 23 21 29 29 C 1.47718 * 119.68587 * 179.72654 * 11 9 8 30 30 H 1.08992 * 109.47042 * 300.00562 * 1 2 3 31 31 H 1.09003 * 109.46717 * 60.00022 * 1 2 3 32 32 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47027 * 59.99902 * 3 2 1 34 34 H 1.08995 * 109.46950 * 299.99909 * 3 2 1 35 35 H 1.08997 * 109.47562 * 60.00512 * 4 3 2 36 36 H 1.08998 * 109.47270 * 299.99428 * 4 3 2 37 37 H 1.09007 * 109.46516 * 59.99962 * 5 4 3 38 38 H 1.09004 * 109.47113 * 300.00431 * 5 4 3 39 39 H 1.09002 * 109.47382 * 59.99956 * 7 6 5 40 40 H 1.09001 * 109.46938 * 299.99942 * 7 6 5 41 41 H 1.09001 * 109.47194 * 299.99575 * 8 7 6 42 42 H 1.08992 * 109.47399 * 59.99748 * 8 7 6 43 43 H 1.08998 * 109.25598 * 252.43173 * 12 11 9 44 44 H 1.08999 * 109.25750 * 11.90255 * 12 11 9 45 45 H 1.09003 * 109.88073 * 170.51455 * 13 12 11 46 46 H 1.08998 * 109.88715 * 291.59614 * 13 12 11 47 47 H 1.09004 * 111.57631 * 281.77210 * 18 16 14 48 48 H 1.08996 * 110.76272 * 157.77726 * 18 16 14 49 49 H 1.08997 * 109.92279 * 217.68456 * 19 18 16 50 50 H 1.09000 * 109.91929 * 96.37615 * 19 18 16 51 51 H 0.96999 * 120.00174 * 179.97438 * 24 23 21 52 52 H 1.09003 * 110.06564 * 351.29851 * 29 11 9 53 53 H 1.09002 * 110.06643 * 112.87131 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 6 4.1580 2.5822 0.0000 6 8 5.5825 2.4693 0.0000 7 6 6.2650 3.7248 0.0000 8 6 7.7759 3.4838 -0.0006 9 6 8.4957 4.8078 -0.0013 10 8 7.8626 5.8422 -0.0008 11 7 9.8430 4.8424 -0.0014 12 6 10.6014 3.5878 -0.0015 13 6 11.7089 3.6251 -1.0702 14 6 12.4909 4.9067 -0.8659 15 1 12.8286 4.9611 0.1691 16 6 11.5351 6.0971 -1.1544 17 1 11.0354 5.9843 -2.1165 18 6 12.5373 7.2587 -1.1678 19 6 13.7404 6.6182 -1.9121 20 7 13.6183 5.1503 -1.7522 21 6 14.4178 4.2005 -2.3300 22 1 14.2349 3.1531 -2.1412 23 6 15.4634 4.5842 -3.1585 24 7 15.6861 5.8607 -3.3891 25 14 16.5537 3.2885 -3.9474 26 1 15.9846 2.8963 -5.2617 27 1 17.9175 3.8421 -4.1438 28 1 16.6255 2.0973 -3.0637 29 6 10.5414 6.1440 -0.0081 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6888 1.8463 -0.8900 35 1 3.8575 0.6434 -0.8891 36 1 3.8567 0.6437 0.8909 37 1 3.8359 3.1236 0.8896 38 1 3.8366 3.1226 -0.8904 39 1 5.9871 4.2894 0.8900 40 1 5.9871 4.2894 -0.8900 41 1 8.0541 2.9190 0.8892 42 1 8.0534 2.9193 -0.8908 43 1 11.0533 3.4408 0.9795 44 1 9.9257 2.7592 -0.2136 45 1 12.3684 2.7655 -0.9508 46 1 11.2643 3.6168 -2.0654 47 1 12.8181 7.5575 -0.1578 48 1 12.1395 8.1058 -1.7264 49 1 14.6759 6.9632 -1.4717 50 1 13.7054 6.8807 -2.9694 51 1 16.4170 6.1288 -3.9677 52 1 9.8264 6.9512 -0.1673 53 1 11.0688 6.2903 0.9345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753874800.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:33 Heat of formation + Delta-G solvation = -125.681610 kcal Electronic energy + Delta-G solvation = -29705.700421 eV Core-core repulsion = 25577.288199 eV Total energy + Delta-G solvation = -4128.412222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54728 -39.90891 -39.23821 -38.56532 -36.80974 -34.64531 -34.14511 -33.04407 -32.40211 -31.10683 -29.61375 -27.93923 -26.72775 -25.99426 -25.24824 -23.90619 -23.64293 -22.57596 -21.86251 -21.17967 -19.93845 -18.77511 -18.14848 -17.67552 -17.55435 -17.04840 -16.94970 -16.91366 -16.59147 -16.28044 -15.96436 -15.68415 -15.61135 -15.17766 -15.07896 -14.91637 -14.61469 -14.14727 -14.07603 -13.85168 -13.55057 -13.31997 -13.14464 -13.08402 -12.81314 -12.68474 -12.61386 -12.57725 -12.48103 -12.24510 -12.06368 -11.99770 -11.91413 -11.89363 -11.74608 -11.60212 -11.51399 -11.00292 -10.81258 -10.69916 -10.64207 -10.60132 -9.69340 -8.86168 -7.82194 -5.16537 1.46924 1.48249 1.56478 1.57423 1.82738 2.42973 2.51687 3.11076 3.36859 3.45217 3.66782 3.85844 3.87018 3.92895 3.99735 4.05689 4.07213 4.12575 4.22720 4.25101 4.30165 4.40867 4.41582 4.45900 4.51309 4.52924 4.55022 4.56017 4.62049 4.67389 4.74262 4.77538 4.81013 4.85926 4.86628 4.89316 4.94022 5.06614 5.09341 5.09940 5.14170 5.24439 5.47211 5.56059 5.56464 5.67441 5.77382 6.14445 6.21972 6.23503 6.38269 7.10516 7.10612 7.81167 8.49887 9.29761 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.001758 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.023324 B =15926.814101 C =17087.124299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.064 3.936 4 C -0.114 4.114 5 C 0.065 3.935 6 O -0.401 6.401 7 C 0.083 3.917 8 C -0.133 4.133 9 C 0.517 3.483 10 O -0.585 6.585 11 N -0.608 5.608 12 C 0.116 3.884 13 C -0.125 4.125 14 C 0.157 3.843 15 H 0.024 0.976 16 C -0.110 4.110 17 H 0.061 0.939 18 C -0.122 4.122 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.228 4.228 22 H 0.089 0.911 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.265 1.265 29 C 0.134 3.866 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.003 0.997 50 H 0.015 0.985 51 H 0.244 0.756 52 H 0.086 0.914 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.691 -7.882 10.469 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.152 4.152 5 C -0.012 4.012 6 O -0.321 6.321 7 C 0.006 3.994 8 C -0.173 4.173 9 C 0.306 3.694 10 O -0.466 6.466 11 N -0.340 5.340 12 C -0.006 4.006 13 C -0.164 4.164 14 C 0.050 3.950 15 H 0.042 0.958 16 C -0.130 4.130 17 H 0.080 0.920 18 C -0.161 4.161 19 C 0.057 3.943 20 N -0.341 5.341 21 C -0.357 4.357 22 H 0.107 0.893 23 C -0.264 4.264 24 N -0.605 5.605 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.190 1.190 29 C 0.012 3.988 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.021 0.979 50 H 0.034 0.966 51 H 0.053 0.947 52 H 0.104 0.896 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.608 -7.731 10.360 29.582 hybrid contribution 0.999 0.284 -0.995 1.438 sum -25.609 -7.446 9.365 28.266 Atomic orbital electron populations 1.22933 0.79273 1.03858 1.01001 1.87826 1.21650 1.28795 1.95660 1.22415 0.92720 0.84591 1.01562 1.21313 0.93430 0.96491 1.03969 1.22403 0.80104 0.97143 1.01530 1.87762 1.19025 1.29616 1.95670 1.22045 0.91104 0.84981 1.01263 1.21509 0.93865 0.94590 1.07316 1.20877 0.82049 0.91557 0.74883 1.90667 1.66680 1.36904 1.52338 1.48372 1.05550 1.07912 1.72121 1.21925 0.93984 0.85204 0.99515 1.21827 0.97076 0.98400 0.99106 1.20910 0.86736 0.94554 0.92831 0.95834 1.22338 0.95326 0.97097 0.98237 0.92046 1.22535 0.95351 0.97098 1.01106 1.21296 0.93665 0.82838 0.96526 1.44517 1.32557 1.02304 1.54714 1.19433 1.06643 0.88648 1.21017 0.89309 1.25625 1.01022 0.98042 1.01688 1.70170 1.32895 1.15246 1.42164 0.85136 0.77605 0.78536 0.78449 1.21649 1.22571 1.19003 1.21384 0.94120 0.85462 0.97857 0.92957 0.93098 0.88681 0.91806 0.92036 0.91125 0.90825 0.91877 0.92275 0.92570 0.93268 0.85687 0.86616 0.89494 0.86658 0.90451 0.92767 0.90172 0.90611 0.97860 0.96638 0.94684 0.89576 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.59 10.70 -148.98 -1.59 -8.19 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.11 -1.60 5.95 30.60 0.18 -1.41 16 5 C 0.06 0.91 5.94 71.99 0.43 1.34 16 6 O -0.40 -7.52 10.34 -148.98 -1.54 -9.06 16 7 C 0.08 1.57 5.23 71.98 0.38 1.95 16 8 C -0.13 -2.35 4.40 29.85 0.13 -2.22 16 9 C 0.52 12.85 7.67 87.66 0.67 13.52 16 10 O -0.58 -18.59 15.34 -3.02 -0.05 -18.64 16 11 N -0.61 -15.07 3.01 -818.88 -2.46 -17.53 16 12 C 0.12 2.45 6.22 86.68 0.54 2.99 16 13 C -0.12 -3.80 5.47 30.43 0.17 -3.63 16 14 C 0.16 5.91 2.58 45.51 0.12 6.03 16 15 H 0.02 0.91 7.95 -2.38 -0.02 0.89 16 16 C -0.11 -3.73 2.83 -10.24 -0.03 -3.76 16 17 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 18 C -0.12 -4.44 6.51 31.52 0.21 -4.23 16 19 C 0.18 8.98 5.43 86.85 0.47 9.45 16 20 N -0.62 -30.69 3.34 -669.90 -2.24 -32.93 16 21 C -0.23 -12.37 9.88 84.03 0.83 -11.54 16 22 H 0.09 4.50 7.23 -2.91 -0.02 4.47 16 23 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 24 N -0.96 -57.83 10.44 21.65 0.23 -57.60 16 25 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 C 0.13 3.72 5.90 85.74 0.51 4.23 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.13 1.67 7.99 -2.39 -0.02 1.65 16 42 H 0.12 1.81 7.55 -2.39 -0.02 1.80 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.12 1.72 5.84 -2.39 -0.01 1.71 16 45 H 0.08 2.36 7.65 -2.39 -0.02 2.34 16 46 H 0.05 1.79 8.12 -2.39 -0.02 1.78 16 47 H 0.08 2.59 8.12 -2.38 -0.02 2.57 16 48 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.00 0.17 7.77 -2.39 -0.02 0.16 16 50 H 0.02 0.87 7.21 -2.39 -0.02 0.85 16 51 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 52 H 0.09 2.50 7.00 -2.39 -0.02 2.49 16 53 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 Total: -1.00 -72.66 413.20 1.97 -70.69 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.86 Total: 13.97 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.74 Total: 11.79 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.48 Total: -108.07 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -3.18 Total: -35.88 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.66 1.97 -70.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753874800.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.990 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds