Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99851 * 2 1 4 4 C 1.53002 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47355 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47062 * 179.97438 * 5 4 3 7 7 C 1.42904 * 113.99957 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47056 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00444 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99994 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00054 * 179.97438 * 10 8 7 12 12 H 1.08995 * 108.95841 * 36.10361 * 11 10 8 13 13 C 1.52523 * 109.03421 * 277.19863 * 11 10 8 14 14 C 1.53838 * 111.65597 * 293.47525 * 13 11 10 15 15 C 1.51445 * 107.04562 * 302.79978 * 14 13 11 16 16 H 1.09006 * 109.86750 * 305.81806 * 15 14 13 17 17 C 1.52323 * 117.46035 * 178.78035 * 15 14 13 18 18 N 1.48243 * 105.86579 * 214.67517 * 17 15 14 19 19 C 1.36936 * 125.78594 * 183.44882 * 18 17 15 20 20 H 1.07998 * 119.99762 * 172.81841 * 19 18 17 21 21 C 1.38810 * 120.00024 * 352.81902 * 19 18 17 22 22 N 1.31622 * 119.99961 * 6.09142 * 21 19 18 23 23 Si 1.86796 * 120.00244 * 186.09397 * 21 19 18 24 24 H 1.48498 * 109.47046 * 94.98498 * 23 21 19 25 25 H 1.48503 * 109.47027 * 214.98911 * 23 21 19 26 26 H 1.48506 * 109.46889 * 334.98738 * 23 21 19 27 27 C 1.48660 * 108.42890 * 3.18084 * 18 17 15 28 28 C 1.53067 * 103.44714 * 24.38460 * 27 18 17 29 29 H 1.09002 * 110.55580 * 76.72645 * 28 27 18 30 30 C 1.51611 * 116.67490 * 204.11342 * 28 27 18 31 31 H 1.09003 * 109.47630 * 300.00121 * 1 2 3 32 32 H 1.08998 * 109.46853 * 60.00599 * 1 2 3 33 33 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47481 * 59.99773 * 3 2 1 35 35 H 1.09001 * 109.47140 * 299.99672 * 3 2 1 36 36 H 1.08996 * 109.47101 * 59.99570 * 4 3 2 37 37 H 1.09001 * 109.46885 * 299.99965 * 4 3 2 38 38 H 1.09005 * 109.47428 * 59.99888 * 5 4 3 39 39 H 1.09001 * 109.47104 * 299.99841 * 5 4 3 40 40 H 1.09005 * 109.46576 * 60.00370 * 7 6 5 41 41 H 1.09006 * 109.47077 * 300.00688 * 7 6 5 42 42 H 0.97002 * 120.00205 * 0.02562 * 10 8 7 43 43 H 1.08991 * 109.04484 * 54.03996 * 13 11 10 44 44 H 1.09003 * 109.03995 * 172.91888 * 13 11 10 45 45 H 1.08994 * 109.94398 * 62.18599 * 14 13 11 46 46 H 1.09004 * 109.94136 * 183.41876 * 14 13 11 47 47 H 1.09001 * 110.17250 * 95.57494 * 17 15 14 48 48 H 1.09003 * 110.17105 * 333.77015 * 17 15 14 49 49 H 0.97001 * 120.00224 * 179.97438 * 22 21 19 50 50 H 1.09011 * 110.62308 * 142.86877 * 27 18 17 51 51 H 1.08999 * 110.63010 * 265.88979 * 27 18 17 52 52 H 1.09000 * 109.94097 * 295.62501 * 30 28 27 53 53 H 1.08999 * 109.94576 * 56.86616 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 8 5.5823 2.4696 0.0012 7 6 6.2648 3.7251 0.0001 8 6 7.7529 3.4878 0.0009 9 8 8.1865 2.3552 0.0018 10 7 8.6021 4.5344 0.0006 11 6 10.0489 4.3038 0.0020 12 1 10.2679 3.4250 -0.6045 13 6 10.5106 4.0483 1.4330 14 6 10.3516 5.3002 2.3129 15 6 11.1434 6.4099 1.6532 16 1 12.1707 6.0846 1.4886 17 6 11.1247 7.7788 2.3210 18 7 11.1665 8.7684 1.2180 19 6 11.2328 10.1283 1.3644 20 1 11.3757 10.7582 0.4988 21 6 11.1165 10.6972 2.6252 22 7 11.0630 9.9279 3.6919 23 14 11.0358 12.5544 2.8082 24 1 9.6159 12.9843 2.8717 25 1 11.7321 12.9596 4.0557 26 1 11.6956 13.1957 1.6425 27 6 11.1309 8.0339 -0.0740 28 6 10.4571 6.7082 0.2887 29 1 9.3814 6.8438 0.4012 30 6 10.7522 5.5257 -0.6131 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8574 0.6436 -0.8890 37 1 3.8567 0.6439 0.8909 38 1 3.8357 3.1239 0.8895 39 1 3.8364 3.1227 -0.8905 40 1 5.9862 4.2907 0.8893 41 1 5.9874 4.2887 -0.8907 42 1 8.2555 5.4404 0.0003 43 1 9.9193 3.2374 1.8581 44 1 11.5598 3.7531 1.4208 45 1 9.3000 5.5800 2.3747 46 1 10.7448 5.1057 3.3107 47 1 11.9971 7.8954 2.9638 48 1 10.2102 7.9014 2.9014 49 1 10.9821 10.3254 4.5730 50 1 10.5371 8.5780 -0.8087 51 1 12.1409 7.8622 -0.4461 52 1 10.3624 5.7146 -1.6133 53 1 11.8272 5.3519 -0.6586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755452968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = -132.855490 kcal Electronic energy + Delta-G solvation = -29917.059107 eV Core-core repulsion = 25788.335802 eV Total energy + Delta-G solvation = -4128.723305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52809 -40.16014 -39.14248 -38.42186 -37.02531 -34.74263 -33.84278 -33.45541 -32.10360 -30.72417 -29.07772 -27.88662 -27.47152 -26.74192 -25.49375 -23.53282 -22.70398 -22.24433 -21.86485 -21.40500 -20.15885 -18.73551 -18.33983 -17.94233 -17.65443 -17.23440 -16.89693 -16.82778 -16.52160 -16.07832 -15.78588 -15.65296 -15.58601 -15.41718 -15.00289 -14.67423 -14.42523 -14.32414 -13.84366 -13.64103 -13.60957 -13.37454 -13.10299 -12.98333 -12.79789 -12.73332 -12.64043 -12.46960 -12.43162 -12.36592 -12.07480 -11.96322 -11.94760 -11.86960 -11.76642 -11.37835 -10.98254 -10.79758 -10.76608 -10.68039 -10.65716 -10.63854 -9.98910 -8.84544 -7.82972 -5.16621 1.46800 1.47840 1.56915 1.62657 1.82085 2.51087 2.63559 3.29398 3.35069 3.57054 3.67082 3.72377 3.84554 3.87474 3.92139 4.12049 4.16010 4.20325 4.28770 4.30182 4.38608 4.43564 4.45418 4.48624 4.51248 4.52955 4.56661 4.58739 4.62640 4.73247 4.77658 4.86285 4.89604 4.96825 5.04515 5.08015 5.10643 5.12168 5.15764 5.21074 5.29034 5.40001 5.51450 5.59108 5.59768 5.76028 5.85989 6.06445 6.21022 6.22812 6.59276 7.11726 7.27208 7.79337 8.47214 9.28118 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.001895 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.244156 B =14770.641546 C =15962.182740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.066 3.934 4 C -0.118 4.118 5 C 0.063 3.937 6 O -0.397 6.397 7 C 0.043 3.957 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.118 4.118 14 C -0.090 4.090 15 C -0.105 4.105 16 H 0.067 0.933 17 C 0.198 3.802 18 N -0.632 5.632 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.268 1.268 27 C 0.135 3.865 28 C -0.088 4.088 29 H 0.076 0.924 30 C -0.098 4.098 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.411 0.589 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.056 0.944 47 H -0.002 1.002 48 H 0.009 0.991 49 H 0.245 0.755 50 H 0.048 0.952 51 H 0.026 0.974 52 H 0.090 0.910 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 -15.164 -10.341 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.010 4.010 4 C -0.156 4.156 5 C -0.013 4.013 6 O -0.316 6.316 7 C -0.036 4.036 8 C 0.298 3.702 9 O -0.452 6.452 10 N -0.365 5.365 11 C 0.052 3.948 12 H 0.101 0.899 13 C -0.157 4.157 14 C -0.128 4.128 15 C -0.124 4.124 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.359 5.359 19 C -0.368 4.368 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.011 3.989 28 C -0.108 4.108 29 H 0.094 0.906 30 C -0.136 4.136 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.017 0.983 48 H 0.027 0.973 49 H 0.054 0.946 50 H 0.066 0.934 51 H 0.044 0.956 52 H 0.108 0.892 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.421 -16.159 -10.213 25.200 hybrid contribution -0.178 1.971 0.842 2.151 sum -16.599 -14.187 -9.371 23.762 Atomic orbital electron populations 1.22934 0.79192 1.03830 1.01081 1.87832 1.21736 1.28958 1.95679 1.22406 0.92218 0.84575 1.01823 1.21324 0.93821 0.96941 1.03485 1.22510 0.79297 0.97094 1.02387 1.87947 1.19409 1.28397 1.95818 1.22352 0.88627 0.87361 1.05235 1.20764 0.89335 0.84701 0.75418 1.90700 1.79675 1.24275 1.50519 1.46076 1.06513 1.09394 1.74515 1.20965 0.79100 0.98674 0.96037 0.89909 1.21846 1.02104 0.96840 0.94895 1.21137 0.99483 0.93892 0.98257 1.21951 0.99231 0.94346 0.96901 0.91427 1.20503 0.97081 0.85978 0.89050 1.45442 1.87027 1.01670 1.01761 1.19471 1.41440 0.82394 0.93481 0.90049 1.25630 1.02886 1.02090 0.95393 1.70202 1.58078 1.34367 0.97321 0.85118 0.77390 0.80234 0.76968 1.21398 1.22521 1.19259 1.21532 0.97416 0.91974 0.87962 1.21917 0.99400 0.93919 0.95546 0.90595 1.21582 1.01738 0.91512 0.98747 0.93002 0.92843 0.88802 0.91716 0.91431 0.91483 0.91780 0.91215 0.90724 0.87946 0.87117 0.75141 0.92673 0.90308 0.92350 0.92573 0.98322 0.97324 0.94607 0.93413 0.95573 0.89165 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.16 10.70 -148.98 -1.59 -8.76 16 3 C 0.07 0.83 5.94 71.98 0.43 1.26 16 4 C -0.12 -1.90 5.95 30.59 0.18 -1.72 16 5 C 0.06 0.89 5.94 71.98 0.43 1.32 16 6 O -0.40 -8.77 9.88 -129.94 -1.28 -10.06 16 7 C 0.04 0.74 6.42 71.23 0.46 1.19 16 8 C 0.51 12.27 7.77 87.65 0.68 12.95 16 9 O -0.57 -19.24 16.03 15.99 0.26 -18.99 16 10 N -0.71 -14.53 4.67 -441.98 -2.07 -16.59 16 11 C 0.16 3.47 2.68 45.11 0.12 3.59 16 12 H 0.08 1.95 7.58 -2.39 -0.02 1.93 16 13 C -0.12 -2.94 5.41 30.72 0.17 -2.77 16 14 C -0.09 -2.62 5.57 30.37 0.17 -2.45 16 15 C -0.11 -3.60 2.31 -10.62 -0.02 -3.62 16 16 H 0.07 2.28 7.92 -2.38 -0.02 2.26 16 17 C 0.20 9.57 5.06 85.82 0.43 10.00 16 18 N -0.63 -31.49 3.45 -693.05 -2.39 -33.89 16 19 C -0.24 -13.18 10.29 84.03 0.86 -12.31 16 20 H 0.08 4.29 7.84 -2.91 -0.02 4.26 16 21 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 22 N -0.95 -57.16 10.42 21.65 0.23 -56.93 16 23 Si 0.97 45.39 29.56 68.60 2.03 47.42 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.14 5.03 6.89 85.98 0.59 5.63 16 28 C -0.09 -2.56 2.38 -10.32 -0.02 -2.58 16 29 H 0.08 2.14 6.31 -2.39 -0.02 2.12 16 30 C -0.10 -2.06 5.37 30.41 0.16 -1.90 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.41 6.98 6.83 -92.71 -0.63 6.35 16 43 H 0.05 1.50 7.93 -2.39 -0.02 1.48 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.72 7.93 -2.39 -0.02 1.70 16 46 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.00 -0.09 7.53 -2.39 -0.02 -0.10 16 48 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 49 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 50 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 53 H 0.09 1.81 7.98 -2.39 -0.02 1.79 16 Total: -1.00 -77.23 414.34 1.76 -75.47 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.24 Total: 15.57 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.35 Total: 6.75 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.23 Total: -107.41 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.62 Total: -37.80 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.23 1.76 -75.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755452968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.390 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds