Wall clock time and date at job start Sat Apr 11 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99942 * 2 1 4 4 C 1.53006 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46797 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46788 * 180.02562 * 5 4 3 7 7 C 1.42902 * 113.99682 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46974 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00173 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.47168 * 125.64441 * 359.96860 * 10 8 7 12 12 C 1.55348 * 106.96398 * 180.98652 * 11 10 8 13 13 H 1.09001 * 112.91296 * 214.97053 * 12 11 10 14 14 C 1.53005 * 106.41671 * 91.60676 * 12 11 10 15 15 C 1.52589 * 111.00984 * 197.18485 * 14 12 11 16 16 C 1.53323 * 108.41195 * 62.37951 * 15 14 12 17 17 C 1.52833 * 108.09445 * 295.87340 * 16 15 14 18 18 H 1.08997 * 109.02542 * 298.41354 * 17 16 15 19 19 N 1.46498 * 109.02562 * 179.49696 * 17 16 15 20 20 C 1.36934 * 119.99800 * 85.00858 * 19 17 16 21 21 H 1.08000 * 120.00193 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99953 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00268 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99951 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46894 * 60.00279 * 24 22 20 26 26 H 1.48494 * 109.47157 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47179 * 300.00477 * 24 22 20 28 28 C 1.50739 * 111.73731 * 58.91733 * 17 16 15 29 29 H 1.09008 * 109.26310 * 186.93883 * 28 17 16 30 30 C 1.47797 * 125.62039 * 180.02562 * 10 8 7 31 31 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46626 * 299.99542 * 1 2 3 33 33 H 1.09002 * 109.47409 * 59.99754 * 1 2 3 34 34 H 1.09000 * 109.46769 * 60.00523 * 3 2 1 35 35 H 1.08992 * 109.47189 * 300.00215 * 3 2 1 36 36 H 1.08994 * 109.46739 * 60.00299 * 4 3 2 37 37 H 1.08996 * 109.46891 * 300.00061 * 4 3 2 38 38 H 1.09000 * 109.47046 * 60.00393 * 5 4 3 39 39 H 1.09000 * 109.47104 * 300.00336 * 5 4 3 40 40 H 1.08993 * 109.47670 * 59.99321 * 7 6 5 41 41 H 1.09003 * 109.46758 * 299.99124 * 7 6 5 42 42 H 1.09005 * 109.96431 * 61.60978 * 11 10 8 43 43 H 1.08998 * 109.96591 * 300.36473 * 11 10 8 44 44 H 1.09002 * 109.16333 * 76.80459 * 14 12 11 45 45 H 1.09006 * 109.16179 * 317.56011 * 14 12 11 46 46 H 1.08999 * 109.67637 * 182.10928 * 15 14 12 47 47 H 1.09005 * 109.67607 * 302.64664 * 15 14 12 48 48 H 1.09000 * 109.74091 * 55.52454 * 16 15 14 49 49 H 1.08999 * 109.74050 * 176.23061 * 16 15 14 50 50 H 0.96996 * 120.00079 * 264.99664 * 19 17 16 51 51 H 0.97002 * 120.00292 * 180.02562 * 23 22 20 52 52 H 1.09001 * 110.59975 * 84.69616 * 30 10 8 53 53 H 1.08999 * 110.50047 * 321.92940 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 8 5.5823 2.4695 -0.0012 7 6 6.2648 3.7250 -0.0001 8 6 7.7530 3.4878 -0.0009 9 8 8.1865 2.3551 -0.0018 10 7 8.6023 4.5343 -0.0006 11 6 8.2141 5.9539 -0.0003 12 6 9.5275 6.7830 -0.0257 13 1 9.4568 7.7077 0.5471 14 6 9.8468 7.0423 -1.4994 15 6 11.3012 7.4684 -1.6773 16 6 12.2030 6.3196 -1.2106 17 6 11.9727 6.1133 0.2861 18 1 12.2521 7.0231 0.8173 19 7 12.8170 5.0103 0.7516 20 6 14.1164 5.2479 1.1125 21 1 14.5189 6.2484 1.0536 22 6 14.9163 4.2029 1.5541 23 7 14.4257 2.9838 1.6264 24 14 16.6891 4.5269 2.0458 25 1 16.7218 5.5017 3.1656 26 1 17.3231 3.2557 2.4783 27 1 17.4313 5.0812 0.8852 28 6 10.5318 5.7914 0.5901 29 1 10.3873 5.7744 1.6704 30 6 10.0776 4.4456 -0.0019 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8567 0.6439 -0.8909 37 1 3.8574 0.6436 0.8891 38 1 3.8365 3.1227 0.8905 39 1 3.8357 3.1239 -0.8895 40 1 5.9875 4.2886 0.8906 41 1 5.9863 4.2906 -0.8893 42 1 7.6460 6.1841 0.9011 43 1 7.6164 6.1765 -0.8842 44 1 9.1944 7.8314 -1.8734 45 1 9.6688 6.1306 -2.0698 46 1 11.4947 7.6833 -2.7282 47 1 11.4991 8.3572 -1.0780 48 1 11.9477 5.4082 -1.7514 49 1 13.2472 6.5749 -1.3906 50 1 12.4556 4.1117 0.8043 51 1 14.9845 2.2536 1.9354 52 1 10.4540 4.3294 -1.0182 53 1 10.4109 3.6199 0.6267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755713402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:39 Heat of formation + Delta-G solvation = -145.117381 kcal Electronic energy + Delta-G solvation = -30056.966969 eV Core-core repulsion = 25927.711948 eV Total energy + Delta-G solvation = -4129.255020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74110 -40.09776 -39.10977 -38.37257 -36.91465 -35.40424 -33.84025 -33.31803 -32.04092 -30.65837 -29.29707 -27.97074 -27.47720 -25.92073 -25.52338 -24.82362 -22.86853 -22.65769 -22.03814 -20.56289 -19.76808 -19.04709 -18.35129 -17.79823 -17.56162 -17.31719 -17.12127 -16.82982 -16.50784 -16.33221 -15.87184 -15.67074 -15.37320 -15.26802 -14.97709 -14.87866 -14.57424 -14.30050 -14.01243 -13.95790 -13.59875 -13.40549 -13.09558 -13.00394 -12.80963 -12.73417 -12.71923 -12.44958 -12.40687 -12.27354 -12.18369 -12.08562 -11.97271 -11.93648 -11.88875 -11.26629 -11.18923 -10.98755 -10.89507 -10.71772 -10.68450 -10.63185 -9.68110 -8.99188 -7.92554 -5.21638 1.45385 1.48877 1.52893 1.55069 1.61287 2.53777 2.56252 3.18660 3.40004 3.43589 3.48831 3.72982 3.79774 3.91985 4.08153 4.13448 4.16399 4.22317 4.24819 4.25928 4.29310 4.38143 4.43705 4.44346 4.44930 4.50825 4.52271 4.57307 4.57947 4.64803 4.68684 4.80200 4.82264 4.86589 4.89417 4.94438 5.07507 5.09850 5.14550 5.20264 5.21749 5.30862 5.40209 5.45626 5.53406 5.60201 5.72378 6.07190 6.24211 6.28671 6.51370 7.10822 7.33879 8.12004 8.32977 9.30905 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.001977 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.018065 B =14159.660888 C =15599.724541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.068 3.932 4 C -0.122 4.122 5 C 0.065 3.935 6 O -0.405 6.405 7 C 0.062 3.938 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.614 5.614 11 C 0.095 3.905 12 C -0.078 4.078 13 H 0.130 0.870 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.186 3.814 18 H 0.052 0.948 19 N -0.743 5.743 20 C -0.235 4.235 21 H 0.080 0.920 22 C -0.082 4.082 23 N -0.975 5.975 24 Si 0.973 3.027 25 H -0.275 1.275 26 H -0.301 1.301 27 H -0.277 1.277 28 C -0.089 4.089 29 H 0.063 0.937 30 C 0.125 3.875 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.039 0.961 50 H 0.368 0.632 51 H 0.248 0.752 52 H 0.058 0.942 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.101 11.819 -6.247 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.008 4.008 4 C -0.160 4.160 5 C -0.011 4.011 6 O -0.324 6.324 7 C -0.017 4.017 8 C 0.301 3.699 9 O -0.468 6.468 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.097 4.097 13 H 0.148 0.852 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.078 3.922 18 H 0.070 0.930 19 N -0.383 5.383 20 C -0.367 4.367 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.626 5.626 24 Si 0.802 3.198 25 H -0.201 1.201 26 H -0.228 1.228 27 H -0.203 1.203 28 C -0.109 4.109 29 H 0.082 0.918 30 C 0.002 3.998 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.200 0.800 51 H 0.057 0.943 52 H 0.076 0.924 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -29.600 10.917 -6.198 32.152 hybrid contribution 1.411 -0.942 0.469 1.761 sum -28.188 9.974 -5.729 30.445 Atomic orbital electron populations 1.22934 0.79123 1.03780 1.01174 1.87845 1.21826 1.29119 1.95695 1.22397 0.91829 0.84544 1.02025 1.21362 0.94202 0.97197 1.03219 1.22531 0.78800 0.96979 1.02778 1.87977 1.19884 1.28701 1.95860 1.22255 0.86598 0.87212 1.05663 1.20931 0.89725 0.83387 0.75906 1.90742 1.79857 1.24676 1.51486 1.48667 1.06045 1.07705 1.72451 1.22810 0.97779 0.77423 1.04530 1.22343 0.91737 0.98043 0.97568 0.85198 1.21580 0.96555 1.01827 0.94578 1.21483 0.94717 0.97282 1.01292 1.22151 0.99048 0.98353 0.97454 1.19848 0.88203 0.90791 0.93331 0.92984 1.42816 1.09953 1.06952 1.78536 1.19627 0.88912 0.94133 1.33998 0.90240 1.25594 1.02584 0.95376 1.03771 1.69848 1.37277 1.00115 1.55345 0.85216 0.80169 0.76127 0.78294 1.20126 1.22760 1.20330 1.21594 0.95292 0.94085 0.99929 0.91812 1.21829 0.79831 0.98264 0.99887 0.88995 0.92818 0.92744 0.91348 0.91209 0.91921 0.92108 0.90544 0.90303 0.86919 0.86493 0.88546 0.87549 0.88186 0.93399 0.91295 0.90684 0.94445 0.94238 0.79981 0.94321 0.92381 0.94958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.54 10.70 -148.98 -1.59 -9.13 16 3 C 0.07 0.87 5.94 71.98 0.43 1.30 16 4 C -0.12 -2.14 5.95 30.60 0.18 -1.95 16 5 C 0.06 0.93 5.94 71.98 0.43 1.36 16 6 O -0.40 -10.05 9.88 -129.94 -1.28 -11.33 16 7 C 0.06 1.16 5.61 71.24 0.40 1.56 16 8 C 0.51 16.03 7.93 87.66 0.69 16.73 16 9 O -0.59 -26.49 16.78 16.00 0.27 -26.22 16 10 N -0.61 -16.89 3.34 -810.44 -2.70 -19.59 16 11 C 0.10 1.45 5.79 87.06 0.50 1.96 16 12 C -0.08 -1.40 3.61 -9.65 -0.03 -1.44 16 13 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.11 -1.86 4.63 30.46 0.14 -1.72 16 15 C -0.11 -2.41 5.93 30.57 0.18 -2.23 16 16 C -0.13 -4.39 5.36 30.65 0.16 -4.22 16 17 C 0.19 7.01 2.46 44.20 0.11 7.12 16 18 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 19 N -0.74 -38.10 5.01 -326.72 -1.64 -39.74 16 20 C -0.23 -13.20 9.91 84.03 0.83 -12.37 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 23 N -0.97 -62.84 13.06 21.65 0.28 -62.55 16 24 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 C -0.09 -2.73 2.49 -10.90 -0.03 -2.76 16 29 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 30 C 0.12 4.48 5.06 86.43 0.44 4.92 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.11 0.94 7.74 -2.39 -0.02 0.92 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 0.99 7.15 -2.38 -0.02 0.97 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.04 1.39 6.80 -2.39 -0.02 1.37 16 49 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.37 21.03 6.45 -92.71 -0.60 20.44 16 51 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 52 H 0.06 2.22 6.15 -2.39 -0.01 2.20 16 53 H 0.03 1.48 7.43 -2.39 -0.02 1.46 16 Total: -1.00 -86.52 415.22 1.79 -84.73 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.28 Total: 28.94 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 6.15 Total: 5.40 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -4.06 Total: -121.88 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.61 Total: -46.68 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -86.52 1.79 -84.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755713402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.388 kcal (2) G-P(sol) polarization free energy of solvation -86.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds