Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47420 * 2 1 4 4 N 1.46504 * 109.47430 * 120.00425 * 2 1 3 5 5 C 1.34775 * 119.99970 * 154.99812 * 4 2 1 6 6 O 1.21282 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.46894 * 109.47090 * 179.97438 * 7 5 4 9 9 C 1.46904 * 110.99742 * 170.00193 * 8 7 5 10 10 C 1.53244 * 109.33717 * 187.25979 * 9 8 7 11 11 N 1.47078 * 108.52025 * 306.16597 * 10 9 8 12 12 C 1.34774 * 120.88580 * 231.19079 * 11 10 9 13 13 O 1.21581 * 120.00222 * 184.98784 * 12 11 10 14 14 N 1.34780 * 119.99633 * 4.71390 * 12 11 10 15 15 C 1.46503 * 119.99662 * 175.19700 * 14 12 11 16 16 C 1.53001 * 109.46836 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47402 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47599 * 179.97438 * 17 16 15 19 19 H 1.08009 * 119.99904 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00336 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99674 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47454 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46688 * 120.00157 * 22 20 18 25 25 H 1.48501 * 109.46992 * 240.00203 * 22 20 18 26 26 C 1.47081 * 118.23549 * 51.46114 * 11 10 9 27 27 C 1.46897 * 111.00511 * 294.30409 * 8 7 5 28 28 H 1.09002 * 109.46865 * 299.99727 * 1 2 3 29 29 H 1.08999 * 109.47149 * 59.99842 * 1 2 3 30 30 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46865 * 240.00273 * 2 1 3 32 32 H 1.09001 * 109.47438 * 300.00602 * 3 2 1 33 33 H 1.09002 * 109.46879 * 60.00281 * 3 2 1 34 34 H 1.08998 * 109.47902 * 180.02562 * 3 2 1 35 35 H 0.97002 * 119.99486 * 334.99618 * 4 2 1 36 36 H 1.09002 * 109.46973 * 59.99886 * 7 5 4 37 37 H 1.08998 * 109.47143 * 300.00481 * 7 5 4 38 38 H 1.08997 * 109.49477 * 67.29646 * 9 8 7 39 39 H 1.08997 * 109.49313 * 307.21133 * 9 8 7 40 40 H 1.09003 * 109.62633 * 186.46131 * 10 9 8 41 41 H 1.08993 * 109.62882 * 65.87882 * 10 9 8 42 42 H 0.96993 * 120.00011 * 355.19747 * 14 12 11 43 43 H 1.08996 * 109.46867 * 299.99425 * 15 14 12 44 44 H 1.08997 * 109.47602 * 60.00251 * 15 14 12 45 45 H 1.09002 * 109.47346 * 299.99738 * 16 15 14 46 46 H 1.08999 * 109.47423 * 59.99800 * 16 15 14 47 47 H 1.09002 * 109.46883 * 300.00299 * 17 16 15 48 48 H 1.08999 * 109.46768 * 59.99677 * 17 16 15 49 49 H 0.97000 * 119.99992 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.63018 * 68.24833 * 26 11 10 51 51 H 1.09001 * 109.63196 * 188.83157 * 26 11 10 52 52 H 1.08993 * 109.49068 * 292.70728 * 27 8 7 53 53 H 1.09000 * 109.49095 * 52.78808 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2404 -1.2593 1.1942 6 8 3.9355 -1.1995 0.2022 7 6 3.7430 -1.9692 2.4248 8 7 5.0893 -2.4984 2.1693 9 6 5.7069 -2.9872 3.4093 10 6 7.1677 -3.3606 3.1357 11 7 7.2055 -4.3042 2.0082 12 6 7.8771 -5.4689 2.1029 13 8 7.9742 -6.1953 1.1328 14 7 8.4458 -5.8256 3.2716 15 6 9.0848 -7.1372 3.4050 16 6 9.6463 -7.2893 4.8201 17 6 10.3130 -8.6593 4.9597 18 6 10.8666 -8.8089 6.3533 19 1 10.7537 -8.0072 7.0682 20 6 11.5163 -9.9697 6.7161 21 7 11.6532 -10.9461 5.8458 22 14 12.2018 -10.1554 8.4438 23 1 11.9179 -8.9242 9.2241 24 1 11.5624 -11.3199 9.1075 25 1 13.6695 -10.3700 8.3735 26 6 6.4958 -3.9405 0.7724 27 6 5.0565 -3.5469 1.1410 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.4623 -0.7387 1.9894 36 1 3.0705 -2.7912 2.6702 37 1 3.7798 -1.2686 3.2590 38 1 5.1670 -3.8656 3.7628 39 1 5.6673 -2.2057 4.1680 40 1 7.5975 -3.8301 4.0206 41 1 7.7334 -2.4641 2.8821 42 1 8.4320 -5.2140 4.0243 43 1 8.3493 -7.9201 3.2203 44 1 9.8953 -7.2219 2.6811 45 1 10.3817 -6.5064 5.0054 46 1 8.8355 -7.2048 5.5437 47 1 9.5773 -9.4420 4.7746 48 1 11.1237 -8.7442 4.2361 49 1 12.1099 -11.7628 6.1011 50 1 6.9981 -3.0986 0.2958 51 1 6.4811 -4.7935 0.0939 52 1 4.5257 -4.4175 1.5261 53 1 4.5452 -3.1712 0.2547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171450074.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -88.652595 kcal Electronic energy + Delta-G solvation = -29448.095932 eV Core-core repulsion = 25353.582160 eV Total energy + Delta-G solvation = -4094.513773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58580 -40.85316 -39.02039 -37.05394 -36.86855 -35.59930 -35.15279 -33.14396 -32.62139 -31.96399 -29.91940 -28.39525 -28.08404 -26.29629 -25.16066 -24.43658 -22.70684 -22.29568 -22.07753 -21.39269 -20.45282 -19.21434 -18.48556 -18.10061 -17.41307 -17.13274 -16.96376 -16.59091 -16.47497 -16.09868 -15.84537 -15.69146 -15.52905 -15.33240 -15.19653 -14.95365 -14.44235 -14.30460 -14.15753 -13.88082 -13.73169 -13.45637 -13.29913 -13.09575 -13.05944 -12.87837 -12.76536 -12.59758 -12.42770 -12.35867 -12.30649 -12.21962 -12.11674 -11.88457 -11.67106 -11.59641 -11.27386 -11.11415 -10.76035 -10.54867 -10.28095 -10.05939 -9.65679 -9.26816 -8.18064 -6.29558 1.42856 1.43198 1.54448 1.57001 1.70562 2.04896 2.13391 2.43036 2.90071 2.93332 3.15964 3.75963 3.83643 3.96505 4.00008 4.09124 4.13653 4.18292 4.22982 4.23442 4.29222 4.34320 4.45762 4.48155 4.51076 4.56447 4.73181 4.75082 4.77113 4.81562 4.83438 4.94300 4.95847 4.98728 5.03653 5.05412 5.17497 5.27574 5.33684 5.43566 5.46306 5.54815 5.61740 5.72125 5.75258 5.85581 5.94472 6.00090 6.23756 6.65772 6.87520 6.94023 7.36627 7.40082 7.50101 8.94352 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.001540 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.985889 B =18176.427113 C =18654.356223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 C -0.158 4.158 4 N -0.718 5.718 5 C 0.509 3.491 6 O -0.566 6.566 7 C 0.039 3.961 8 N -0.532 5.532 9 C 0.046 3.954 10 C 0.110 3.890 11 N -0.629 5.629 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.729 5.729 15 C 0.149 3.851 16 C -0.099 4.099 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.280 1.280 25 H -0.281 1.281 26 C 0.139 3.861 27 C 0.053 3.947 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.042 0.958 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.410 0.590 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.070 0.930 47 H -0.008 1.008 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.030 0.970 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.244 28.823 -4.752 39.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.029 3.971 3 C -0.217 4.217 4 N -0.372 5.372 5 C 0.295 3.705 6 O -0.444 6.444 7 C -0.092 4.092 8 N -0.258 5.258 9 C -0.082 4.082 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.401 3.599 13 O -0.522 6.522 14 N -0.387 5.387 15 C 0.024 3.976 16 C -0.137 4.137 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.180 1.180 24 H -0.206 1.206 25 H -0.207 1.207 26 C 0.016 3.984 27 C -0.076 4.076 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.060 0.940 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.011 0.989 48 H 0.009 0.991 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.048 0.952 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.343 28.561 -6.335 38.706 hybrid contribution 0.001 -1.166 1.156 1.642 sum -25.341 27.395 -5.179 37.676 Atomic orbital electron populations 1.22021 0.91946 1.03005 1.04067 1.20934 0.95474 0.92667 0.87985 1.22130 1.00433 0.95962 1.03148 1.46045 1.17314 1.56324 1.17481 1.20983 0.81305 0.78419 0.89752 1.90689 1.56933 1.60285 1.36490 1.22064 0.90137 1.00584 0.96401 1.61548 1.20004 1.34982 1.09229 1.22571 0.93644 1.00526 0.91425 1.22008 0.97796 0.92969 0.88511 1.47401 1.54126 1.18096 1.17026 1.16086 0.78841 0.81689 0.83310 1.90870 1.67407 1.55500 1.38431 1.45177 1.60789 1.19555 1.13173 1.21096 0.95693 0.82881 0.97897 1.21583 0.99885 0.98678 0.93537 1.18951 0.94372 0.92357 0.95831 1.21710 1.35958 1.01532 0.98507 0.91354 1.26030 0.96572 0.95632 1.01891 1.70125 1.43956 1.06685 1.36838 0.85355 0.77763 0.78520 0.79120 1.18029 1.20628 1.20714 1.21544 0.91411 0.99917 0.85531 1.22519 0.95806 0.92296 0.96971 0.90477 0.90311 0.91974 0.92105 0.90847 0.91148 0.94668 0.74817 0.90066 0.84571 0.94017 0.85932 0.88274 0.89649 0.75137 0.93548 0.93742 0.91329 0.91116 0.98910 0.99054 0.92871 0.91086 0.90892 0.95174 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.38 71.98 0.68 0.10 16 2 C 0.13 1.25 3.18 44.99 0.14 1.40 16 3 C -0.16 -1.50 9.48 71.98 0.68 -0.82 16 4 N -0.72 -5.80 5.08 -442.53 -2.25 -8.04 16 5 C 0.51 7.27 7.46 87.66 0.65 7.92 16 6 O -0.57 -13.57 14.00 -3.03 -0.04 -13.62 16 7 C 0.04 0.36 5.45 85.56 0.47 0.82 16 8 N -0.53 -8.18 4.37 -898.90 -3.93 -12.10 16 9 C 0.05 0.55 5.62 86.38 0.49 1.03 16 10 C 0.11 1.74 6.59 86.35 0.57 2.31 16 11 N -0.63 -15.82 3.00 -835.04 -2.51 -18.32 16 12 C 0.70 23.35 8.31 179.05 1.49 24.83 16 13 O -0.64 -27.66 15.83 -3.97 -0.06 -27.73 16 14 N -0.73 -21.88 5.47 -478.54 -2.62 -24.50 16 15 C 0.15 5.54 5.68 86.38 0.49 6.03 16 16 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 17 C 0.02 1.19 4.97 29.84 0.15 1.34 16 18 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 19 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 22 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.14 3.50 6.61 86.50 0.57 4.08 16 27 C 0.05 1.08 5.27 86.54 0.46 1.53 16 28 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.91 7.58 -2.39 -0.02 0.90 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.41 0.57 8.60 -92.71 -0.80 -0.23 16 36 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 37 H 0.14 0.44 7.97 -2.39 -0.02 0.42 16 38 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 0.68 7.99 -2.39 -0.02 0.66 16 40 H 0.10 1.26 5.64 -2.39 -0.01 1.24 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.41 9.24 5.97 -92.71 -0.55 8.68 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 47 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.07 2.15 7.09 -2.39 -0.02 2.14 16 52 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.09 2.11 5.77 -2.39 -0.01 2.10 16 Total: -1.00 -82.06 420.78 -1.86 -83.92 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.45 Total: 14.48 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 7.69 Total: 17.33 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -11.02 Total: -120.12 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.11 Total: -41.34 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -82.06 -1.86 -83.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171450074.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.733 kcal (2) G-P(sol) polarization free energy of solvation -82.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds