Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46731 * 2 1 4 4 H 1.09001 * 109.47426 * 55.00221 * 3 2 1 5 5 C 1.53002 * 109.46756 * 174.99942 * 3 2 1 6 6 N 1.46496 * 109.47546 * 294.99774 * 3 2 1 7 7 C 1.34771 * 120.00425 * 155.00404 * 6 3 2 8 8 O 1.21281 * 119.99847 * 359.97438 * 7 6 3 9 9 C 1.50695 * 120.00327 * 180.02562 * 7 6 3 10 10 N 1.46899 * 109.47238 * 179.97438 * 9 7 6 11 11 C 1.46901 * 111.00028 * 294.29951 * 10 9 7 12 12 C 1.53241 * 109.34051 * 172.74800 * 11 10 9 13 13 N 1.47083 * 108.51918 * 53.83189 * 12 11 10 14 14 C 1.34771 * 120.87876 * 128.84161 * 13 12 11 15 15 O 1.21590 * 120.00155 * 174.97958 * 14 13 12 16 16 N 1.34771 * 120.00315 * 354.97431 * 14 13 12 17 17 C 1.46499 * 120.00521 * 185.08441 * 16 14 13 18 18 C 1.52997 * 109.47497 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.47298 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00326 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00547 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99729 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47287 * 90.00369 * 23 21 19 25 25 H 1.48506 * 109.47229 * 210.00073 * 23 21 19 26 26 H 1.48500 * 109.47605 * 330.00185 * 23 21 19 27 27 C 1.47079 * 118.23716 * 308.81103 * 13 12 11 28 28 C 1.46906 * 110.99856 * 170.00124 * 10 9 7 29 29 H 1.08995 * 109.47188 * 299.99737 * 1 2 3 30 30 H 1.08996 * 109.47000 * 59.99946 * 1 2 3 31 31 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46723 * 240.00002 * 2 1 3 33 33 H 1.08998 * 109.46732 * 119.99600 * 2 1 3 34 34 H 1.09001 * 109.47642 * 59.99762 * 5 3 2 35 35 H 1.09008 * 109.47197 * 299.99797 * 5 3 2 36 36 H 1.08999 * 109.46887 * 180.02562 * 5 3 2 37 37 H 0.97007 * 119.99715 * 335.00321 * 6 3 2 38 38 H 1.08999 * 109.46955 * 300.00217 * 9 7 6 39 39 H 1.09007 * 109.47212 * 59.99632 * 9 7 6 40 40 H 1.09002 * 109.49322 * 292.70470 * 11 10 9 41 41 H 1.08998 * 109.48968 * 52.78689 * 11 10 9 42 42 H 1.08993 * 109.62661 * 294.12106 * 12 11 10 43 43 H 1.08998 * 109.62592 * 173.54280 * 12 11 10 44 44 H 0.97001 * 120.00205 * 5.08252 * 16 14 13 45 45 H 1.09004 * 109.47120 * 300.00151 * 17 16 14 46 46 H 1.09003 * 109.47197 * 59.99726 * 17 16 14 47 47 H 1.08999 * 109.46913 * 299.99618 * 18 17 16 48 48 H 1.08997 * 109.47257 * 60.00057 * 18 17 16 49 49 H 0.97000 * 120.00705 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.63223 * 291.48149 * 27 13 12 51 51 H 1.09004 * 109.78804 * 170.99030 * 27 13 12 52 52 H 1.09001 * 109.49250 * 307.21275 * 28 10 9 53 53 H 1.09002 * 109.49607 * 67.29237 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2996 8 8 1.7319 4.1028 -0.3061 9 6 1.1265 4.1121 -2.5871 10 7 1.0575 5.5646 -2.3788 11 6 -0.0220 5.9119 -1.4450 12 6 0.0538 7.4064 -1.1147 13 7 0.0534 8.1641 -2.3753 14 6 -0.8085 9.1816 -2.5705 15 8 -0.7350 9.8555 -3.5799 16 7 -1.7520 9.4521 -1.6469 17 6 -2.7582 10.4843 -1.9081 18 6 -3.7021 10.5917 -0.7088 19 6 -4.7376 11.6531 -0.9778 20 1 -4.7235 12.1971 -1.9108 21 6 -5.7021 11.9305 -0.0326 22 7 -6.6055 12.8571 -0.2671 23 14 -5.7260 10.9902 1.5813 24 1 -4.8934 11.7041 2.5825 25 1 -7.1224 10.8935 2.0773 26 1 -5.1812 9.6254 1.3673 27 6 1.0190 7.7823 -3.4170 28 6 0.9051 6.2730 -3.6567 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9053 -0.7160 35 1 3.8532 0.9570 1.0572 36 1 3.9281 2.4720 0.1262 37 1 1.4871 1.5661 -2.0463 38 1 1.8647 3.8898 -3.3575 39 1 0.1501 3.7438 -2.9024 40 1 -0.9854 5.6893 -1.9038 41 1 0.0882 5.3309 -0.5294 42 1 0.9710 7.6133 -0.5634 43 1 -0.8099 7.6930 -0.5148 44 1 -1.7648 8.9634 -0.8091 45 1 -2.2631 11.4424 -2.0672 46 1 -3.3292 10.2183 -2.7977 47 1 -4.1972 9.6338 -0.5493 48 1 -3.1308 10.8580 0.1805 49 1 -7.2844 13.0521 0.3977 50 1 2.0290 8.0254 -3.0869 51 1 0.7968 8.3175 -4.3402 52 1 1.6878 5.9540 -4.3450 53 1 -0.0712 6.0454 -4.0847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343983168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -84.712180 kcal Electronic energy + Delta-G solvation = -30042.476033 eV Core-core repulsion = 25948.133129 eV Total energy + Delta-G solvation = -4094.342903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57629 -40.87271 -39.05517 -37.33540 -36.69458 -35.58542 -34.77244 -33.33951 -32.47976 -31.65448 -30.91985 -29.65065 -27.06805 -25.95942 -24.76545 -24.57025 -22.86562 -22.44626 -21.84804 -21.40010 -20.57054 -19.20111 -18.97926 -18.10247 -17.31623 -17.26125 -16.88648 -16.51866 -16.28561 -16.06716 -15.79159 -15.68520 -15.34508 -15.32272 -15.08053 -14.76973 -14.67325 -14.61678 -14.39227 -14.24703 -14.03096 -13.42638 -13.26704 -13.17473 -13.04763 -12.88650 -12.65092 -12.43876 -12.33128 -12.30699 -12.18538 -12.13614 -12.09733 -11.90581 -11.76835 -11.60566 -11.51803 -11.21526 -10.79236 -10.74525 -10.24332 -10.01687 -9.64183 -9.26411 -8.30161 -6.37300 1.38687 1.40835 1.52134 1.59276 1.72660 2.06389 2.14288 2.36349 2.90977 2.93380 3.04500 3.73339 3.81761 3.90244 3.98813 4.08830 4.14356 4.17512 4.20943 4.26849 4.34736 4.42580 4.44395 4.46098 4.51630 4.54509 4.66736 4.73947 4.76548 4.76776 4.80333 4.82852 4.88672 5.01384 5.03614 5.12602 5.14060 5.20154 5.30667 5.39141 5.41147 5.42065 5.47030 5.64682 5.65468 5.76790 5.93765 6.00456 6.22708 6.67010 6.69237 6.93578 7.26858 7.38266 7.51675 8.86462 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002148 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.352741 B =13034.694740 C =14732.568435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.061 0.939 5 C -0.159 4.159 6 N -0.714 5.714 7 C 0.511 3.489 8 O -0.564 6.564 9 C 0.038 3.962 10 N -0.532 5.532 11 C 0.047 3.953 12 C 0.118 3.882 13 N -0.629 5.629 14 C 0.701 3.299 15 O -0.636 6.636 16 N -0.735 5.735 17 C 0.164 3.836 18 C -0.011 4.011 19 C -0.538 4.538 20 H 0.030 0.970 21 C 0.005 3.995 22 N -0.949 5.949 23 Si 0.958 3.042 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.238 1.238 27 C 0.131 3.869 28 C 0.053 3.947 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.414 0.586 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.405 0.595 45 H 0.041 0.959 46 H 0.043 0.957 47 H 0.036 0.964 48 H 0.033 0.967 49 H 0.268 0.732 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.119 0.881 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.821 -34.356 -1.443 40.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.036 3.964 4 H 0.080 0.920 5 C -0.217 4.217 6 N -0.368 5.368 7 C 0.298 3.702 8 O -0.442 6.442 9 C -0.093 4.093 10 N -0.257 5.257 11 C -0.082 4.082 12 C -0.005 4.005 13 N -0.367 5.367 14 C 0.402 3.598 15 O -0.518 6.518 16 N -0.392 5.392 17 C 0.040 3.960 18 C -0.049 4.049 19 C -0.576 4.576 20 H 0.048 0.952 21 C -0.193 4.193 22 N -0.589 5.589 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.161 1.161 27 C 0.008 3.992 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.250 0.750 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.243 0.757 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.137 0.863 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.294 -33.170 -1.187 39.984 hybrid contribution -1.348 -0.121 0.261 1.378 sum 20.946 -33.291 -0.926 39.343 Atomic orbital electron populations 1.21782 0.95673 1.02097 1.01614 1.21789 0.96067 0.93920 1.04266 1.20971 0.94901 0.93842 0.86665 0.92035 1.22127 0.95183 1.01354 1.03049 1.45988 1.70241 1.06314 1.14268 1.20878 0.76333 0.82560 0.90438 1.90684 1.50780 1.64724 1.38004 1.22061 1.03854 0.87643 0.95719 1.61559 1.46078 1.06176 1.11865 1.22498 0.91785 0.95664 0.98218 1.21802 1.03048 0.90702 0.84958 1.47405 1.37070 1.33341 1.18851 1.16055 0.79651 0.81016 0.83058 1.90856 1.76138 1.53462 1.31390 1.45344 1.31080 1.42204 1.20571 1.20899 0.87722 0.88959 0.98436 1.19637 0.93952 0.96841 0.94455 1.21219 1.12761 1.20148 1.03476 0.95165 1.26061 0.94366 0.95867 1.02975 1.70069 1.17668 1.33869 1.37276 0.85550 0.77659 0.80562 0.78178 1.19091 1.21079 1.16123 1.21642 0.91744 0.94770 0.91045 1.22512 1.01915 0.92533 0.90598 0.93924 0.92612 0.91694 0.89637 0.89727 0.91122 0.90876 0.94527 0.74961 0.84876 0.90110 0.94857 0.88413 0.90249 0.89454 0.75660 0.94069 0.93874 0.94552 0.94848 0.92306 0.90431 0.89922 0.86325 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.80 71.98 0.71 -0.30 16 2 C -0.12 -0.58 5.47 30.60 0.17 -0.41 16 3 C 0.14 1.35 2.57 44.99 0.12 1.46 16 4 H 0.06 0.95 7.58 -2.39 -0.02 0.93 16 5 C -0.16 -1.53 9.48 71.98 0.68 -0.84 16 6 N -0.71 -5.87 4.53 -442.55 -2.00 -7.87 16 7 C 0.51 7.34 7.46 87.66 0.65 8.00 16 8 O -0.56 -13.34 13.99 -3.03 -0.04 -13.38 16 9 C 0.04 0.38 5.45 85.56 0.47 0.85 16 10 N -0.53 -8.77 4.37 -899.79 -3.93 -12.70 16 11 C 0.05 0.91 5.26 86.38 0.45 1.37 16 12 C 0.12 2.61 6.59 86.35 0.57 3.17 16 13 N -0.63 -17.12 3.01 -835.94 -2.52 -19.64 16 14 C 0.70 25.36 8.31 179.06 1.49 26.84 16 15 O -0.64 -28.40 15.83 -4.00 -0.06 -28.46 16 16 N -0.73 -25.95 5.47 -478.54 -2.62 -28.57 16 17 C 0.16 7.14 5.62 86.38 0.49 7.62 16 18 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 19 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 20 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 21 C 0.00 0.26 5.47 84.65 0.46 0.73 16 22 N -0.95 -59.80 13.96 21.44 0.30 -59.50 16 23 Si 0.96 43.15 27.47 68.60 1.88 45.03 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 27 C 0.13 2.92 6.58 86.35 0.57 3.49 16 28 C 0.05 0.81 5.62 86.38 0.49 1.30 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.35 7.75 -2.39 -0.02 0.34 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.41 0.81 8.60 -92.70 -0.80 0.01 16 38 H 0.13 0.61 7.97 -2.39 -0.02 0.59 16 39 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 2.08 5.76 -2.39 -0.01 2.06 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.80 5.63 -2.39 -0.01 1.78 16 44 H 0.41 11.80 5.97 -92.71 -0.55 11.25 16 45 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 47 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 48 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 49 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 50 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 51 H 0.08 2.12 7.11 -2.38 -0.02 2.10 16 52 H 0.12 1.12 7.99 -2.39 -0.02 1.10 16 53 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -81.45 416.29 -1.82 -83.27 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.51 Total: 20.02 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.67 Total: 21.79 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -10.77 Total: -128.27 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.11 Total: -41.84 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -81.45 -1.82 -83.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343983168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.442 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds