Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 H 1.09001 * 109.46956 * 305.00201 * 3 2 1 5 5 C 1.53005 * 109.46961 * 185.00081 * 3 2 1 6 6 N 1.46502 * 109.46898 * 65.00365 * 3 2 1 7 7 C 1.34780 * 119.99656 * 204.99962 * 6 3 2 8 8 O 1.21275 * 120.00277 * 359.97438 * 7 6 3 9 9 C 1.50696 * 119.99844 * 179.97438 * 7 6 3 10 10 N 1.46895 * 109.47214 * 180.69256 * 9 7 6 11 11 C 1.46904 * 110.99767 * 63.62988 * 10 9 7 12 12 C 1.53238 * 109.33820 * 172.74444 * 11 10 9 13 13 N 1.47082 * 108.52302 * 53.82973 * 12 11 10 14 14 C 1.34780 * 120.88323 * 128.78809 * 13 12 11 15 15 O 1.21585 * 119.99769 * 354.87169 * 14 13 12 16 16 N 1.34772 * 120.00047 * 174.86995 * 14 13 12 17 17 C 1.46491 * 119.99965 * 174.91755 * 16 14 13 18 18 C 1.53008 * 109.46952 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47031 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99887 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99951 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00008 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47625 * 89.99818 * 23 21 19 25 25 H 1.48505 * 109.46940 * 210.00127 * 23 21 19 26 26 H 1.48502 * 109.47067 * 329.99419 * 23 21 19 27 27 C 1.47081 * 118.23700 * 308.81519 * 13 12 11 28 28 C 1.46897 * 111.00246 * 299.32570 * 10 9 7 29 29 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46846 * 299.99785 * 1 2 3 31 31 H 1.08994 * 109.47565 * 59.99883 * 1 2 3 32 32 H 1.09005 * 109.46846 * 240.00215 * 2 1 3 33 33 H 1.09005 * 109.47145 * 120.00303 * 2 1 3 34 34 H 1.08995 * 109.47066 * 300.00131 * 5 3 2 35 35 H 1.09001 * 109.46848 * 60.00491 * 5 3 2 36 36 H 1.09004 * 109.46735 * 180.02562 * 5 3 2 37 37 H 0.96996 * 119.99979 * 24.99553 * 6 3 2 38 38 H 1.09004 * 109.46947 * 60.69251 * 9 7 6 39 39 H 1.09007 * 109.47536 * 300.69623 * 9 7 6 40 40 H 1.09001 * 109.49403 * 52.78651 * 11 10 9 41 41 H 1.08996 * 109.48979 * 292.70417 * 11 10 9 42 42 H 1.09001 * 109.62706 * 173.53872 * 12 11 10 43 43 H 1.09001 * 109.63343 * 293.92436 * 12 11 10 44 44 H 0.97000 * 119.99900 * 354.90853 * 16 14 13 45 45 H 1.09004 * 109.47318 * 299.99475 * 17 16 14 46 46 H 1.09002 * 109.47613 * 59.99876 * 17 16 14 47 47 H 1.09002 * 109.47313 * 299.99368 * 18 17 16 48 48 H 1.08997 * 109.47325 * 60.00232 * 18 17 16 49 49 H 0.96999 * 119.99969 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.63075 * 170.89173 * 27 13 12 51 51 H 1.09001 * 109.62616 * 291.47843 * 27 13 12 52 52 H 1.08997 * 109.49040 * 67.29205 * 28 10 9 53 53 H 1.08999 * 109.49534 * 307.21268 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 1.5256 3.4384 1.2997 8 8 1.7327 4.1029 0.3065 9 6 1.1264 4.1121 2.5872 10 7 1.0419 5.5631 2.3749 11 6 -0.0138 5.8931 1.4081 12 6 -0.1921 7.4140 1.3508 13 7 1.1161 8.0277 1.0767 14 6 1.2656 8.9213 0.0788 15 8 0.3360 9.1603 -0.6675 16 7 2.4455 9.5499 -0.0917 17 6 2.6437 10.4364 -1.2410 18 6 4.0581 11.0185 -1.1981 19 6 4.2623 11.9300 -2.3808 20 1 3.4633 12.0788 -3.0921 21 6 5.4690 12.5738 -2.5547 22 7 5.6474 13.3688 -3.5871 23 14 6.8511 12.3158 -1.3248 24 1 7.6862 11.1649 -1.7527 25 1 7.6903 13.5392 -1.2594 26 1 6.2754 12.0383 0.0157 27 6 2.2571 7.6401 1.9200 28 6 2.3389 6.1102 1.9550 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.9994 0.9053 0.7160 35 1 3.8531 0.9571 -1.0572 36 1 3.9282 2.4720 -0.1253 37 1 1.4871 1.5660 2.0463 38 1 1.8712 3.8998 3.3544 39 1 0.1557 3.7347 2.9090 40 1 -0.9497 5.4286 1.7189 41 1 0.2669 5.5223 0.4224 42 1 -0.8911 7.6709 0.5548 43 1 -0.5758 7.7740 2.3054 44 1 3.1633 9.4155 0.5466 45 1 2.5111 9.8708 -2.1633 46 1 1.9162 11.2473 -1.2043 47 1 4.1904 11.5843 -0.2759 48 1 4.7859 10.2079 -1.2347 49 1 6.4965 13.8215 -3.7096 50 1 3.1773 8.0464 1.5004 51 1 2.1119 8.0221 2.9305 52 1 2.5869 5.7364 0.9616 53 1 3.1093 5.8033 2.6623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343983174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -85.513454 kcal Electronic energy + Delta-G solvation = -30560.474832 eV Core-core repulsion = 26466.097183 eV Total energy + Delta-G solvation = -4094.377649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73335 -40.98963 -38.95197 -37.35951 -36.69349 -35.47390 -34.77329 -33.43006 -32.46820 -31.66303 -30.95544 -29.61804 -27.01348 -25.93472 -24.73593 -24.58949 -22.89047 -22.55970 -21.86287 -21.50147 -20.59077 -19.25748 -18.98524 -18.09110 -17.46996 -17.19804 -16.84061 -16.44457 -16.24732 -16.09483 -15.92654 -15.74976 -15.46349 -15.25317 -15.12584 -14.79016 -14.70066 -14.59538 -14.45584 -14.33064 -13.58968 -13.48132 -13.33014 -13.17921 -13.03405 -12.82765 -12.70297 -12.37876 -12.33320 -12.19822 -12.18192 -12.08338 -11.99308 -11.93006 -11.76453 -11.67140 -11.52828 -11.41161 -11.21212 -10.79732 -10.24838 -10.05050 -9.62668 -9.11099 -8.30677 -6.38162 1.37916 1.41083 1.52569 1.61490 1.63624 2.09101 2.26506 2.36416 2.84049 2.96736 3.03791 3.71203 3.87430 3.93167 3.99294 4.04902 4.06736 4.15053 4.28526 4.34301 4.40400 4.42167 4.45184 4.50601 4.54888 4.60927 4.64084 4.70811 4.71979 4.73168 4.79304 4.81952 4.95566 5.01048 5.09602 5.10927 5.12308 5.19492 5.25312 5.37512 5.38368 5.40587 5.50403 5.61781 5.64971 5.76898 5.89086 6.00004 6.22076 6.61009 6.68148 6.95850 7.25888 7.33466 7.52670 8.86160 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002293 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.828043 B =12208.391448 C =13210.869806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.138 3.862 4 H 0.051 0.949 5 C -0.158 4.158 6 N -0.710 5.710 7 C 0.472 3.528 8 O -0.580 6.580 9 C 0.037 3.963 10 N -0.504 5.504 11 C 0.038 3.962 12 C 0.134 3.866 13 N -0.627 5.627 14 C 0.699 3.301 15 O -0.642 6.642 16 N -0.733 5.733 17 C 0.164 3.836 18 C -0.009 4.009 19 C -0.540 4.540 20 H 0.028 0.972 21 C 0.003 3.997 22 N -0.950 5.950 23 Si 0.961 3.039 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.236 1.236 27 C 0.113 3.887 28 C 0.029 3.971 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.416 0.584 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.407 0.593 45 H 0.036 0.964 46 H 0.042 0.958 47 H 0.039 0.961 48 H 0.033 0.967 49 H 0.268 0.732 50 H 0.083 0.917 51 H 0.097 0.903 52 H 0.043 0.957 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -33.365 22.730 41.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.070 0.930 5 C -0.217 4.217 6 N -0.363 5.363 7 C 0.259 3.741 8 O -0.461 6.461 9 C -0.094 4.094 10 N -0.226 5.226 11 C -0.091 4.091 12 C 0.011 3.989 13 N -0.365 5.365 14 C 0.400 3.600 15 O -0.524 6.524 16 N -0.390 5.390 17 C 0.040 3.960 18 C -0.047 4.047 19 C -0.578 4.578 20 H 0.046 0.954 21 C -0.194 4.194 22 N -0.589 5.589 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.159 1.159 27 C -0.010 4.010 28 C -0.100 4.100 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.253 0.747 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.245 0.755 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.077 0.923 50 H 0.102 0.898 51 H 0.115 0.885 52 H 0.061 0.939 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.025 -32.388 21.845 39.882 hybrid contribution 0.999 -0.099 -0.987 1.407 sum -7.026 -32.487 20.859 39.241 Atomic orbital electron populations 1.21771 0.95394 1.02235 1.01586 1.21782 0.96325 0.93614 1.04257 1.20934 0.94675 0.94104 0.86978 0.93030 1.22119 0.95431 1.01058 1.03064 1.46162 1.69500 1.06747 1.13920 1.22766 0.76242 0.82969 0.92151 1.90720 1.51879 1.64423 1.39034 1.22593 1.06625 0.86555 0.93593 1.62407 1.05304 1.10244 1.44663 1.22569 0.96176 0.95037 0.95340 1.21587 0.83480 0.92037 1.01758 1.47342 1.12185 1.43536 1.33398 1.16111 0.82971 0.79729 0.81188 1.90841 1.41907 1.70369 1.49305 1.45270 1.14575 1.49286 1.29867 1.20886 0.97866 0.91028 0.86252 1.19629 0.92448 0.95826 0.96801 1.21223 0.99730 1.27355 1.09485 0.95397 1.26102 1.01669 0.93922 0.97699 1.70078 1.26302 1.31241 1.31324 0.85514 0.77910 0.77999 0.80314 1.19033 1.20968 1.15944 1.21945 0.88044 0.95264 0.95701 1.22681 0.91988 0.93985 1.01349 0.91390 0.92149 0.94414 0.90153 0.89236 0.90664 0.91260 0.95034 0.74657 0.84531 0.84790 0.87621 0.94847 0.91276 0.89217 0.75518 0.94578 0.93972 0.94314 0.94837 0.92276 0.89844 0.88504 0.93885 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.80 71.98 0.71 -0.43 16 2 C -0.12 -0.80 5.47 30.59 0.17 -0.63 16 3 C 0.14 1.72 2.57 44.99 0.12 1.83 16 4 H 0.05 1.03 7.58 -2.39 -0.02 1.01 16 5 C -0.16 -2.07 9.48 71.98 0.68 -1.39 16 6 N -0.71 -6.61 4.53 -442.52 -2.00 -8.61 16 7 C 0.47 7.20 7.21 87.66 0.63 7.84 16 8 O -0.58 -15.63 11.30 -3.02 -0.03 -15.66 16 9 C 0.04 0.32 5.83 85.56 0.50 0.82 16 10 N -0.50 -7.79 4.83 -899.83 -4.35 -12.13 16 11 C 0.04 0.77 5.19 86.38 0.45 1.22 16 12 C 0.13 3.35 6.61 86.35 0.57 3.92 16 13 N -0.63 -18.20 3.01 -835.93 -2.52 -20.71 16 14 C 0.70 27.16 8.31 179.05 1.49 28.65 16 15 O -0.64 -30.86 15.80 -3.98 -0.06 -30.92 16 16 N -0.73 -27.28 5.41 -478.54 -2.59 -29.87 16 17 C 0.16 7.48 5.62 86.38 0.49 7.97 16 18 C -0.01 -0.44 4.16 29.85 0.12 -0.31 16 19 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 20 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 21 C 0.00 0.19 5.47 84.65 0.46 0.65 16 22 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 23 Si 0.96 43.52 27.47 68.60 1.88 45.40 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 27 C 0.11 2.33 6.49 86.35 0.56 2.89 16 28 C 0.03 0.53 5.14 86.38 0.44 0.98 16 29 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.06 0.38 7.75 -2.38 -0.02 0.36 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.42 0.82 8.60 -92.71 -0.80 0.02 16 38 H 0.14 0.41 8.13 -2.38 -0.02 0.39 16 39 H 0.13 0.44 8.09 -2.38 -0.02 0.42 16 40 H 0.11 1.56 8.07 -2.39 -0.02 1.54 16 41 H 0.03 0.96 5.87 -2.39 -0.01 0.95 16 42 H 0.07 2.09 7.04 -2.39 -0.02 2.07 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.41 12.24 6.12 -92.71 -0.57 11.67 16 45 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 48 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 49 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.08 1.68 5.84 -2.39 -0.01 1.66 16 51 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.04 1.16 5.58 -2.39 -0.01 1.14 16 53 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -86.72 411.51 -2.25 -88.97 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.52 Total: 21.76 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 7.63 Total: 22.09 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -11.16 Total: -131.64 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.10 Total: -46.59 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -86.72 -2.25 -88.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343983174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.454 kcal (2) G-P(sol) polarization free energy of solvation -86.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds