Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99279 * 2 1 4 4 O 1.20820 * 120.00421 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99604 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47121 * 183.83093 * 5 3 2 7 7 C 1.36936 * 119.99749 * 90.83579 * 6 5 3 8 8 H 1.08000 * 119.99571 * 168.80661 * 7 6 5 9 9 C 1.38809 * 120.00119 * 348.81128 * 7 6 5 10 10 N 1.31617 * 120.00537 * 327.88109 * 9 7 6 11 11 Si 1.86799 * 119.99785 * 147.88295 * 9 7 6 12 12 H 1.48497 * 109.47232 * 94.98862 * 11 9 7 13 13 H 1.48506 * 109.47209 * 214.98505 * 11 9 7 14 14 H 1.48500 * 109.47197 * 334.98667 * 11 9 7 15 15 C 1.46501 * 119.99700 * 270.83886 * 6 5 3 16 16 C 1.50700 * 109.46970 * 274.09553 * 15 6 5 17 17 O 1.21288 * 120.00162 * 354.91019 * 16 15 6 18 18 N 1.34777 * 119.99952 * 174.90760 * 16 15 6 19 19 C 1.46497 * 119.99962 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46859 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.46677 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46677 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47708 * 64.99807 * 22 21 20 24 24 C 1.52995 * 109.47793 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47081 * 300.00403 * 24 23 22 26 26 C 1.52995 * 109.47335 * 59.99709 * 25 24 23 27 27 C 1.53000 * 109.47188 * 299.99861 * 26 25 24 28 28 H 1.08996 * 109.47692 * 59.99925 * 1 2 3 29 29 H 1.09008 * 109.46440 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47181 * 299.99363 * 1 2 3 31 31 H 1.09004 * 109.47227 * 63.83118 * 5 3 2 32 32 H 1.09000 * 109.46959 * 303.83101 * 5 3 2 33 33 H 0.96995 * 120.00803 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.46685 * 154.09882 * 15 6 5 35 35 H 1.08999 * 109.47102 * 34.09850 * 15 6 5 36 36 H 0.96996 * 119.99541 * 0.02562 * 18 16 15 37 37 H 1.08998 * 109.47114 * 60.00465 * 19 18 16 38 38 H 1.09001 * 109.47337 * 300.00024 * 19 18 16 39 39 H 1.09000 * 109.47545 * 60.00496 * 20 19 18 40 40 H 1.08999 * 109.47389 * 299.99758 * 20 19 18 41 41 H 1.08998 * 109.47413 * 60.00084 * 21 20 19 42 42 H 1.09001 * 109.47220 * 299.99531 * 21 20 19 43 43 H 1.09000 * 109.47585 * 304.99583 * 22 21 20 44 44 H 1.09009 * 109.47176 * 300.00204 * 23 22 21 45 45 H 1.09001 * 109.46864 * 59.99822 * 23 22 21 46 46 H 1.08999 * 109.47302 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.46805 * 60.00098 * 24 23 22 48 48 H 1.09001 * 109.47052 * 299.99544 * 25 24 23 49 49 H 1.09004 * 109.46925 * 179.97438 * 25 24 23 50 50 H 1.08996 * 109.47193 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.47185 * 59.99917 * 26 25 24 52 52 H 1.09001 * 109.47103 * 300.00106 * 27 26 25 53 53 H 1.08999 * 109.47217 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 -0.0006 6 7 3.9818 2.6769 0.0918 7 6 4.1971 3.2478 1.3177 8 1 4.6733 4.2146 1.3870 9 6 3.8036 2.5837 2.4714 10 7 2.7414 1.8066 2.4537 11 14 4.7814 2.7930 4.0492 12 1 4.1631 3.8596 4.8769 13 1 4.7792 1.5153 4.8061 14 1 6.1791 3.1703 3.7190 15 6 4.1667 3.4679 -1.1273 16 6 5.5631 3.2594 -1.6544 17 8 6.3577 2.5970 -1.0212 18 7 5.9289 3.8089 -2.8294 19 6 7.2865 3.6066 -3.3414 20 6 7.4396 4.3309 -4.6804 21 6 8.8574 4.1191 -5.2155 22 6 9.0103 4.8428 -6.5548 23 6 8.8811 6.3517 -6.3370 24 6 9.0346 7.0755 -7.6761 25 6 10.4090 6.7619 -8.2707 26 6 10.5383 5.2531 -8.4886 27 6 10.3848 4.5293 -7.1494 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9525 0.8417 -0.9232 32 1 3.9594 0.7226 0.8528 33 1 2.4666 1.3422 3.2597 34 1 4.0175 4.5238 -0.9014 35 1 3.4436 3.1514 -1.8790 36 1 5.2936 4.3389 -3.3356 37 1 7.4669 2.5409 -3.4817 38 1 8.0073 4.0063 -2.6281 39 1 7.2595 5.3967 -4.5398 40 1 6.7190 3.9316 -5.3940 41 1 9.0372 3.0533 -5.3563 42 1 9.5784 4.5182 -4.5021 43 1 8.2324 4.5068 -7.2404 44 1 7.9020 6.5751 -5.9130 45 1 9.6591 6.6877 -5.6515 46 1 8.9421 8.1504 -7.5209 47 1 8.2569 6.7395 -8.3619 48 1 11.1868 7.0979 -7.5849 49 1 10.5182 7.2772 -9.2250 50 1 11.5176 5.0296 -8.9117 51 1 9.7605 4.9171 -9.1744 52 1 11.1625 4.8653 -6.4636 53 1 10.4773 3.4544 -7.3046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356641406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -148.750605 kcal Electronic energy + Delta-G solvation = -29837.755703 eV Core-core repulsion = 25708.343134 eV Total energy + Delta-G solvation = -4129.412569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.90219 -40.40918 -39.68659 -37.64008 -36.62546 -36.23424 -34.31270 -33.41920 -31.61837 -31.12522 -30.13071 -28.56666 -27.65169 -26.29005 -24.21663 -23.61345 -22.68623 -21.88456 -21.61891 -20.91409 -20.54576 -18.92030 -18.25823 -17.71540 -17.41582 -16.91634 -16.75190 -16.69732 -16.43778 -16.11064 -15.84423 -15.41736 -15.06601 -15.04601 -14.78730 -14.67304 -14.49129 -13.98589 -13.91275 -13.84032 -13.52018 -13.37422 -13.11716 -12.86724 -12.77477 -12.70755 -12.55358 -12.39641 -12.36168 -12.20880 -12.12015 -11.93849 -11.92545 -11.82311 -11.52931 -11.37150 -11.29552 -11.25703 -10.90350 -10.77790 -10.70356 -10.41360 -9.91777 -9.07930 -8.03455 -5.23961 1.42402 1.48170 1.59663 1.88853 1.93663 2.17511 2.48671 2.56220 3.19057 3.48947 3.73797 3.83852 3.89751 4.11112 4.12096 4.22599 4.33009 4.36814 4.36982 4.46196 4.50537 4.52933 4.54025 4.60435 4.65716 4.68520 4.68906 4.71023 4.73902 4.78480 4.85606 4.90667 4.92994 4.99060 5.05238 5.12888 5.19506 5.24653 5.31766 5.33430 5.40603 5.42027 5.47696 5.57400 5.59674 5.66774 5.68828 5.92541 6.09546 6.74947 6.95511 7.45349 7.52732 7.73923 8.08334 9.06423 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.001956 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.626503 B =14308.135830 C =15362.681129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.386 6.386 3 C 0.472 3.528 4 O -0.536 6.536 5 C 0.192 3.808 6 N -0.561 5.561 7 C -0.259 4.259 8 H 0.074 0.926 9 C -0.042 4.042 10 N -0.911 5.911 11 Si 0.955 3.045 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.485 3.515 17 O -0.571 6.571 18 N -0.724 5.724 19 C 0.120 3.880 20 C -0.117 4.117 21 C -0.110 4.110 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.057 0.943 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 5.401 -23.446 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 C 0.313 3.687 4 O -0.424 6.424 5 C 0.063 3.937 6 N -0.278 5.278 7 C -0.388 4.388 8 H 0.092 0.908 9 C -0.238 4.238 10 N -0.556 5.556 11 Si 0.784 3.216 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.206 1.206 15 C 0.000 4.000 16 C 0.270 3.730 17 O -0.449 6.449 18 N -0.379 5.379 19 C -0.004 4.004 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.099 4.099 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.153 4.153 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.076 0.924 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.104 5.152 -22.843 25.504 hybrid contribution -0.211 0.314 1.218 1.275 sum 9.893 5.466 -21.625 24.401 Atomic orbital electron populations 1.23178 0.77178 1.04186 1.00936 1.86485 1.23495 1.35165 1.85166 1.25351 0.93476 0.80421 0.69406 1.90422 1.67351 1.37490 1.47137 1.20082 0.85664 0.86675 1.01296 1.43583 1.74854 1.07359 1.02023 1.19289 1.32149 1.04153 0.83245 0.90787 1.25289 0.97201 1.00953 1.00327 1.70086 1.21414 1.35325 1.28819 0.85460 0.79388 0.76703 0.80083 1.21510 1.21539 1.20579 1.20864 0.91682 0.98045 0.89384 1.22558 0.91721 0.78302 0.80467 1.90639 1.54613 1.40877 1.58795 1.46028 1.14941 1.54714 1.22173 1.21325 0.83266 0.99989 0.95784 1.21759 0.98450 1.01093 0.94177 1.21530 0.95750 1.00770 0.96774 1.21106 0.97658 0.95167 0.95946 1.21652 1.01874 0.94636 0.97284 1.21537 0.97370 1.00000 0.96851 1.21548 0.97336 0.96177 1.00767 1.21528 1.01740 0.95258 0.97120 1.21592 0.96822 1.00123 0.96807 0.92513 0.85696 0.94596 0.89991 0.90461 0.93920 0.88819 0.89323 0.75042 0.93205 0.93676 0.90240 0.90203 0.91782 0.92207 0.90939 0.91490 0.92590 0.91980 0.91921 0.92430 0.91762 0.91843 0.91943 0.92429 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.54 16 2 O -0.39 -16.78 10.57 -51.46 -0.54 -17.32 16 3 C 0.47 23.26 5.94 71.24 0.42 23.68 16 4 O -0.54 -29.22 15.84 21.98 0.35 -28.88 16 5 C 0.19 9.40 5.56 85.63 0.48 9.88 16 6 N -0.56 -28.10 1.52 -710.67 -1.08 -29.18 16 7 C -0.26 -14.50 9.59 84.03 0.81 -13.69 16 8 H 0.07 4.10 8.00 -2.91 -0.02 4.08 16 9 C -0.04 -2.36 4.64 84.86 0.39 -1.97 16 10 N -0.91 -53.45 9.51 21.65 0.21 -53.24 16 11 Si 0.96 46.62 29.66 68.60 2.03 48.65 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 14 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 15 C 0.13 5.09 6.15 85.63 0.53 5.61 16 16 C 0.48 17.90 7.89 87.66 0.69 18.59 16 17 O -0.57 -26.89 16.44 -3.06 -0.05 -26.94 16 18 N -0.72 -18.55 5.56 -463.06 -2.57 -21.12 16 19 C 0.12 2.78 5.67 86.38 0.49 3.28 16 20 C -0.12 -1.72 5.08 30.60 0.16 -1.56 16 21 C -0.11 -1.53 4.68 30.60 0.14 -1.38 16 22 C -0.08 -0.96 2.19 -10.79 -0.02 -0.98 16 23 C -0.12 -1.39 4.96 30.59 0.15 -1.24 16 24 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 25 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 26 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 27 C -0.12 -1.36 5.20 30.60 0.16 -1.20 16 28 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 29 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.08 3.49 8.08 -2.38 -0.02 3.47 16 32 H 0.08 4.18 6.66 -2.39 -0.02 4.17 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.09 3.48 8.01 -2.39 -0.02 3.46 16 35 H 0.09 3.04 8.10 -2.39 -0.02 3.03 16 36 H 0.41 7.59 8.47 -92.71 -0.79 6.81 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.06 6.57 -2.39 -0.02 1.04 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.77 6.57 -2.38 -0.02 0.76 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -75.11 421.59 4.56 -70.54 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.09 Total: 19.22 kcal Atomic # 6 Polarization: 32.13 SS G_CDS: 6.13 Total: 38.27 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.44 Total: -103.55 kcal Atomic # 8 Polarization: -72.89 SS G_CDS: -0.25 Total: -73.14 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.11 4.56 -70.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356641406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.210 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds