Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 C 1.52991 * 109.47584 * 239.99568 * 2 1 3 5 5 N 1.46502 * 109.46905 * 119.99685 * 2 1 3 6 6 C 1.34780 * 120.00168 * 59.99990 * 5 2 1 7 7 O 1.21587 * 119.99411 * 355.07296 * 6 5 2 8 8 N 1.34773 * 120.00091 * 175.06663 * 6 5 2 9 9 C 1.46958 * 120.59411 * 185.21890 * 8 6 5 10 10 C 1.53367 * 108.63880 * 235.24906 * 9 8 6 11 11 N 1.46963 * 108.63774 * 310.57948 * 10 9 8 12 12 C 1.34768 * 120.59524 * 235.19898 * 11 10 9 13 13 O 1.21587 * 120.00049 * 5.20762 * 12 11 10 14 14 N 1.34775 * 120.00255 * 184.92705 * 12 11 10 15 15 C 1.46501 * 120.00113 * 175.28370 * 14 12 11 16 16 C 1.53008 * 109.47133 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47157 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99840 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99789 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47572 * 59.99568 * 22 20 18 24 24 H 1.48506 * 109.47177 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47259 * 299.99734 * 22 20 18 26 26 C 1.46961 * 118.80869 * 55.47354 * 11 10 9 27 27 C 1.46963 * 120.59492 * 5.24881 * 8 6 5 28 28 H 1.08991 * 109.47336 * 300.00030 * 1 2 3 29 29 H 1.08999 * 109.46671 * 60.00576 * 1 2 3 30 30 H 1.09007 * 109.46713 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46868 * 299.99814 * 3 2 1 33 33 H 1.08998 * 109.46875 * 59.99558 * 3 2 1 34 34 H 1.08997 * 109.47765 * 300.00305 * 4 2 1 35 35 H 1.08999 * 109.47234 * 60.00200 * 4 2 1 36 36 H 1.09005 * 109.47614 * 180.02562 * 4 2 1 37 37 H 0.96997 * 120.00042 * 240.00826 * 5 2 1 38 38 H 1.09001 * 109.60772 * 115.50913 * 9 8 6 39 39 H 1.09002 * 109.75202 * 355.08354 * 9 8 6 40 40 H 1.09006 * 109.61378 * 190.83053 * 10 9 8 41 41 H 1.09005 * 109.74866 * 70.41014 * 10 9 8 42 42 H 0.97000 * 120.00196 * 355.29169 * 14 12 11 43 43 H 1.09001 * 109.47265 * 299.99705 * 15 14 12 44 44 H 1.08992 * 109.47204 * 60.00527 * 15 14 12 45 45 H 1.09006 * 109.46695 * 300.00127 * 16 15 14 46 46 H 1.08999 * 109.47286 * 59.99609 * 16 15 14 47 47 H 1.08997 * 109.46943 * 300.00190 * 17 16 15 48 48 H 1.09005 * 109.46648 * 59.99624 * 17 16 15 49 49 H 0.97001 * 119.99713 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.61157 * 64.26987 * 26 11 10 51 51 H 1.09007 * 109.60804 * 184.77451 * 26 11 10 52 52 H 1.09007 * 109.61186 * 244.49545 * 27 8 6 53 53 H 1.09005 * 109.60830 * 4.83210 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4096 7 8 0.9219 -2.5456 0.6578 8 7 2.2216 -2.6452 2.4562 9 6 1.9666 -4.0812 2.6368 10 6 1.3756 -4.3021 4.0347 11 7 2.2171 -3.6033 5.0162 12 6 2.7452 -4.2673 6.0633 13 8 2.6064 -5.4720 6.1518 14 7 3.4320 -3.5969 7.0095 15 6 3.9171 -4.3005 8.1993 16 6 4.6584 -3.3167 9.1068 17 6 5.1657 -4.0516 10.3492 18 6 5.8964 -3.0827 11.2427 19 1 5.9900 -2.0465 10.9531 20 6 6.4462 -3.5194 12.4293 21 7 6.3326 -4.7814 12.7815 22 14 7.3514 -2.3183 13.5371 23 1 6.4271 -1.2313 13.9486 24 1 7.8438 -3.0317 14.7429 25 1 8.5025 -1.7369 12.8008 26 6 2.4674 -2.1661 4.8387 27 6 3.0630 -1.9464 3.4377 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6768 -1.7489 -1.2492 35 1 1.6769 -0.2075 -2.1391 36 1 3.1302 -0.7217 -1.2489 37 1 2.5758 -0.2191 1.8348 38 1 2.9019 -4.6333 2.5437 39 1 1.2606 -4.4277 1.8821 40 1 1.3588 -5.3684 4.2605 41 1 0.3615 -3.9042 4.0729 42 1 3.6050 -2.6484 6.9027 43 1 3.0716 -4.7262 8.7397 44 1 4.5950 -5.0990 7.8981 45 1 5.5040 -2.8906 8.5667 46 1 3.9802 -2.5183 9.4081 47 1 4.3204 -4.4781 10.8894 48 1 5.8440 -4.8497 10.0475 49 1 6.7191 -5.0886 13.6165 50 1 1.5301 -1.6174 4.9307 51 1 3.1718 -1.8212 5.5957 52 1 4.0764 -2.3464 3.4016 53 1 3.0822 -0.8805 3.2101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356966288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -75.379948 kcal Electronic energy + Delta-G solvation = -30113.368311 eV Core-core repulsion = 26019.430083 eV Total energy + Delta-G solvation = -4093.938227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88691 -41.06772 -38.74091 -37.33122 -36.95168 -35.36441 -35.08357 -33.46648 -32.59923 -31.82714 -29.12337 -28.20625 -28.14476 -27.94112 -25.28936 -24.76909 -23.82382 -22.29257 -21.95846 -20.72935 -20.28289 -19.77059 -18.54869 -18.17703 -17.51902 -17.04754 -16.98245 -16.60481 -16.48240 -15.99452 -15.89776 -15.57431 -15.30748 -15.19043 -15.15046 -14.83020 -14.42123 -14.36296 -14.25196 -13.73092 -13.64191 -13.45553 -13.12851 -12.99479 -12.97923 -12.70774 -12.69180 -12.53433 -12.49983 -12.48963 -12.38697 -12.32311 -12.07290 -11.99274 -11.64332 -11.58819 -11.27989 -11.11840 -10.84925 -10.52427 -10.44949 -10.16557 -9.92340 -9.25491 -8.16988 -6.28450 1.35604 1.43665 1.46454 1.54272 1.76670 2.04265 2.17773 2.43711 2.83329 2.90217 3.16791 3.72338 3.83388 3.89830 3.99830 4.05362 4.10949 4.17949 4.20503 4.24729 4.30541 4.42312 4.50562 4.58600 4.67284 4.73508 4.77014 4.77604 4.83471 4.90960 4.92493 4.98298 4.99029 5.00219 5.05239 5.19195 5.24666 5.28845 5.41206 5.44482 5.47130 5.51619 5.55717 5.71528 5.73812 5.79286 5.86794 5.96762 6.24564 6.88194 6.93032 6.99654 7.40997 7.50470 7.58928 8.94775 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.001800 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.351628 B =15551.959924 C =16716.327615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.728 5.728 6 C 0.706 3.294 7 O -0.619 6.619 8 N -0.629 5.629 9 C 0.125 3.875 10 C 0.120 3.880 11 N -0.626 5.626 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.728 5.728 15 C 0.149 3.851 16 C -0.099 4.099 17 C 0.022 3.978 18 C -0.540 4.540 19 H 0.069 0.931 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.265 1.265 26 C 0.094 3.906 27 C 0.099 3.901 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.407 0.593 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.410 0.590 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.069 0.931 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.262 0.738 50 H 0.088 0.912 51 H 0.109 0.891 52 H 0.080 0.920 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 16.449 -28.426 34.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.387 5.387 6 C 0.408 3.592 7 O -0.500 6.500 8 N -0.366 5.366 9 C 0.001 3.999 10 C -0.004 4.004 11 N -0.364 5.364 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.386 5.386 15 C 0.024 3.976 16 C -0.137 4.137 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.087 0.913 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.030 4.030 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.249 0.751 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.127 0.873 52 H 0.098 0.902 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.678 15.095 -28.778 33.907 hybrid contribution 0.712 0.236 1.213 1.426 sum -8.966 15.332 -27.565 32.792 Atomic orbital electron populations 1.22217 0.95033 1.02468 1.02189 1.20304 0.93820 0.92673 0.83689 1.22044 1.02149 0.92286 1.04090 1.22174 1.00940 1.01068 0.97522 1.45439 1.56473 1.09952 1.26802 1.16010 0.80172 0.82082 0.80943 1.90845 1.40251 1.69099 1.49819 1.47244 1.53452 1.09686 1.26207 1.21717 1.01592 0.80222 0.96419 1.21822 0.93259 0.98810 0.86497 1.47193 1.53298 1.10408 1.25459 1.16053 0.78678 0.84682 0.80316 1.90890 1.66885 1.14541 1.79422 1.45169 1.58953 1.13411 1.21041 1.21091 0.97164 0.95071 0.84252 1.21580 0.99235 0.97570 0.95303 1.18949 0.94703 0.95232 0.92651 1.21654 1.34794 0.96406 1.04920 0.91318 1.26037 0.97392 0.96976 0.99833 1.70114 1.46649 1.16795 1.23972 0.85468 0.79033 0.78653 0.77678 1.19001 1.21418 1.18947 1.22374 1.02811 0.79875 0.97922 1.22270 0.94341 0.98966 0.86854 0.92590 0.90910 0.93034 0.91015 0.89785 0.90974 0.93642 0.90634 0.92466 0.75433 0.91335 0.88405 0.89365 0.90639 0.75079 0.93643 0.93571 0.91143 0.91212 0.99033 0.99010 0.92910 0.89404 0.87268 0.90150 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.40 71.98 0.60 -1.57 16 2 C 0.18 1.95 1.06 3.60 0.00 1.96 16 3 C -0.15 -0.67 8.59 71.98 0.62 -0.05 16 4 C -0.16 -2.10 8.40 71.98 0.60 -1.50 16 5 N -0.73 -8.08 5.02 -438.01 -2.20 -10.28 16 6 C 0.71 12.64 7.70 179.05 1.38 14.02 16 7 O -0.62 -15.90 11.99 -3.99 -0.05 -15.95 16 8 N -0.63 -9.45 2.95 -835.16 -2.46 -11.91 16 9 C 0.13 2.24 6.59 86.42 0.57 2.81 16 10 C 0.12 2.40 6.60 86.41 0.57 2.97 16 11 N -0.63 -12.76 2.94 -835.17 -2.46 -15.21 16 12 C 0.70 20.50 8.29 179.06 1.49 21.98 16 13 O -0.64 -24.93 15.76 -3.99 -0.06 -25.00 16 14 N -0.73 -19.27 5.47 -478.54 -2.62 -21.88 16 15 C 0.15 5.15 5.68 86.38 0.49 5.64 16 16 C -0.10 -3.63 5.27 30.60 0.16 -3.47 16 17 C 0.02 1.14 4.97 29.85 0.15 1.29 16 18 C -0.54 -29.42 9.11 25.60 0.23 -29.19 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 20 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 21 N -0.94 -56.65 13.29 21.45 0.28 -56.36 16 22 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.09 1.03 6.59 86.56 0.57 1.60 16 27 C 0.10 0.86 6.58 86.56 0.57 1.43 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 1.06 6.00 -2.38 -0.01 1.05 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.04 0.91 6.34 -2.39 -0.02 0.90 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.41 2.11 5.95 -92.71 -0.55 1.56 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.94 7.00 -2.39 -0.02 1.92 16 40 H 0.09 2.12 6.99 -2.38 -0.02 2.11 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.41 7.69 5.94 -92.71 -0.55 7.14 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 51 H 0.11 0.84 5.61 -2.38 -0.01 0.83 16 52 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 53 H 0.12 0.24 5.61 -2.38 -0.01 0.22 16 Total: -1.00 -78.98 411.46 0.75 -78.24 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -0.19 Total: 15.23 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 8.47 Total: 18.12 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -9.45 Total: -115.64 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.11 Total: -40.95 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -78.98 0.75 -78.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356966288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.858 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds