Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 C 1.53007 * 109.46978 * 119.99412 * 2 1 3 5 5 N 1.46893 * 109.46939 * 175.09471 * 4 2 1 6 6 C 1.46850 * 110.99915 * 284.22447 * 5 4 2 7 7 C 1.53037 * 109.52365 * 174.15870 * 6 5 4 8 8 C 1.53125 * 109.27668 * 59.18721 * 7 6 5 9 9 C 1.53116 * 109.15646 * 302.34649 * 8 7 6 10 10 H 1.09008 * 109.50490 * 297.70661 * 9 8 7 11 11 C 1.53008 * 109.50415 * 177.63694 * 9 8 7 12 12 N 1.46495 * 109.46990 * 65.07238 * 11 9 8 13 13 C 1.34782 * 119.99688 * 180.02562 * 12 11 9 14 14 O 1.21593 * 119.99695 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99868 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47118 * 180.02562 * 16 15 13 18 18 O 1.21289 * 119.99970 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99875 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99858 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00099 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00207 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47119 * 59.99880 * 24 22 20 26 26 H 1.48493 * 109.47356 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47269 * 300.00148 * 24 22 20 28 28 C 1.46851 * 110.99758 * 160.02317 * 5 4 2 29 29 H 1.09002 * 109.47431 * 184.91624 * 1 2 3 30 30 H 1.08998 * 109.47418 * 304.92047 * 1 2 3 31 31 H 1.09000 * 109.47082 * 64.91819 * 1 2 3 32 32 H 1.09000 * 109.47217 * 239.99546 * 2 1 3 33 33 H 1.09007 * 109.46928 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46996 * 299.99687 * 3 2 1 35 35 H 1.08991 * 109.47529 * 59.99738 * 3 2 1 36 36 H 1.09003 * 109.47091 * 55.09214 * 4 2 1 37 37 H 1.09000 * 109.47044 * 295.09189 * 4 2 1 38 38 H 1.09004 * 109.45607 * 54.15234 * 6 5 4 39 39 H 1.08995 * 109.46671 * 294.18009 * 6 5 4 40 40 H 1.08998 * 109.51060 * 299.24805 * 7 6 5 41 41 H 1.08997 * 109.50722 * 179.12165 * 7 6 5 42 42 H 1.08996 * 109.52807 * 182.43810 * 8 7 6 43 43 H 1.09001 * 109.57506 * 62.27299 * 8 7 6 44 44 H 1.08995 * 109.47012 * 185.07650 * 11 9 8 45 45 H 1.09003 * 109.46334 * 305.07278 * 11 9 8 46 46 H 0.96995 * 120.00274 * 0.02562 * 12 11 9 47 47 H 0.97001 * 120.00037 * 0.02562 * 15 13 12 48 48 H 1.08997 * 109.47435 * 300.00153 * 16 15 13 49 49 H 1.09002 * 109.47026 * 60.00319 * 16 15 13 50 50 H 0.96995 * 120.00431 * 0.02562 * 19 17 16 51 51 H 0.97002 * 120.00046 * 179.97438 * 23 22 20 52 52 H 1.08992 * 109.46472 * 65.82247 * 28 5 4 53 53 H 1.08997 * 109.45998 * 305.84741 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5041 -0.8246 1.1916 6 6 3.9211 -1.8673 0.2454 7 6 5.4447 -1.8483 0.1022 8 6 6.0843 -2.0909 1.4721 9 6 5.5958 -1.0200 2.4514 10 1 5.9158 -0.0371 2.1052 11 6 6.1840 -1.2893 3.8380 12 7 7.6397 -1.1327 3.7898 13 6 8.3752 -1.3232 4.9031 14 8 7.8303 -1.6245 5.9475 15 7 9.7146 -1.1796 4.8586 16 6 10.5139 -1.3861 6.0688 17 6 11.9708 -1.1660 5.7522 18 8 12.3081 -0.8656 4.6265 19 7 12.8987 -1.3018 6.7201 20 6 14.2240 -1.1010 6.4322 21 1 14.5244 -0.8335 5.4298 22 6 15.1808 -1.2416 7.4300 23 7 14.8153 -1.5665 8.6497 24 14 16.9865 -0.9673 7.0378 25 1 17.1811 0.4208 6.5471 26 1 17.7967 -1.1762 8.2646 27 1 17.4170 -1.9276 5.9901 28 6 4.0679 -1.0628 2.5265 29 1 -0.3634 -1.0239 0.0881 30 1 -0.3634 0.5883 0.8426 31 1 -0.3633 0.4356 -0.9308 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6066 -1.7203 1.2945 37 1 1.7502 -0.1590 2.1371 38 1 3.4628 -1.6806 -0.7258 39 1 3.6032 -2.8419 0.6156 40 1 5.7622 -0.8786 -0.2810 41 1 5.7551 -2.6325 -0.5882 42 1 7.1691 -2.0352 1.3828 43 1 5.7990 -3.0770 1.8389 44 1 5.7659 -0.5815 4.5537 45 1 5.9378 -2.3055 4.1459 46 1 8.0743 -0.8919 2.9567 47 1 10.1492 -0.9388 4.0255 48 1 10.1988 -0.6803 6.8372 49 1 10.3701 -2.4045 6.4298 50 1 12.6290 -1.5416 7.6204 51 1 15.4833 -1.6650 9.3461 52 1 3.7493 -2.0412 2.8860 53 1 3.7162 -0.2919 3.2121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358293963.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -111.422861 kcal Electronic energy + Delta-G solvation = -29187.909280 eV Core-core repulsion = 25092.408114 eV Total energy + Delta-G solvation = -4095.501165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27696 -40.38120 -39.89230 -37.42350 -36.23527 -35.63425 -35.24648 -33.38371 -33.19308 -32.28874 -29.30055 -27.89643 -27.20162 -26.99058 -25.94332 -23.87168 -22.88668 -21.92397 -21.34761 -20.71494 -20.61281 -20.09040 -19.45976 -17.57043 -17.40430 -16.98935 -16.84279 -16.49652 -16.23382 -16.05333 -15.91613 -15.66564 -15.38065 -15.18566 -15.09740 -14.92250 -14.68236 -14.21806 -14.01991 -13.92981 -13.73929 -13.52447 -13.32526 -13.22213 -13.00720 -12.93645 -12.87757 -12.53383 -12.45582 -12.12804 -12.07039 -11.86688 -11.79600 -11.65718 -11.54839 -11.50454 -11.44528 -11.21169 -11.08685 -10.54009 -10.41411 -10.08860 -9.79132 -9.21882 -8.49491 -5.99812 1.39272 1.43431 1.53590 1.63035 1.91465 2.13594 2.29873 2.87666 3.08742 3.17777 3.37062 3.74439 3.76082 3.90660 3.98315 4.12196 4.21894 4.23248 4.31193 4.38363 4.44449 4.46724 4.47504 4.55799 4.60707 4.63087 4.70947 4.75944 4.78684 4.87851 4.88117 4.95820 5.00917 5.10190 5.12722 5.17675 5.19321 5.28668 5.32671 5.32834 5.39771 5.43990 5.50197 5.54249 5.57417 5.92520 5.97254 6.17669 6.19604 6.49623 7.04484 7.04767 7.44261 7.55085 7.96003 8.67145 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.001488 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.790447 B =18817.244985 C =19106.761179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.134 4.134 4 C 0.060 3.940 5 N -0.539 5.539 6 C 0.055 3.945 7 C -0.112 4.112 8 C -0.116 4.116 9 C -0.082 4.082 10 H 0.088 0.912 11 C 0.148 3.852 12 N -0.729 5.729 13 C 0.704 3.296 14 O -0.634 6.634 15 N -0.724 5.724 16 C 0.142 3.858 17 C 0.433 3.567 18 O -0.624 6.624 19 N -0.559 5.559 20 C -0.339 4.339 21 H 0.087 0.913 22 C -0.009 4.009 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.067 3.933 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.409 0.591 47 H 0.410 0.590 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.399 0.601 51 H 0.280 0.720 52 H 0.034 0.966 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.109 0.954 -17.029 32.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.192 4.192 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.073 4.073 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.101 4.101 10 H 0.107 0.893 11 C 0.024 3.976 12 N -0.386 5.386 13 C 0.403 3.597 14 O -0.516 6.516 15 N -0.382 5.382 16 C 0.013 3.987 17 C 0.220 3.780 18 O -0.512 6.512 19 N -0.194 5.194 20 C -0.468 4.468 21 H 0.105 0.895 22 C -0.210 4.210 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.246 0.754 47 H 0.248 0.752 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.233 0.767 51 H 0.089 0.911 52 H 0.052 0.948 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.089 1.287 -16.796 31.899 hybrid contribution 0.905 -0.667 0.268 1.156 sum -26.183 0.620 -16.528 30.970 Atomic orbital electron populations 1.21813 0.94581 1.01830 1.02158 1.21062 0.95390 0.96743 0.97428 1.21670 1.01437 0.95183 1.00867 1.22202 0.86458 0.99007 0.99091 1.61846 1.09611 1.46746 1.08062 1.22153 0.96250 0.92144 0.96735 1.21546 0.94128 1.02628 0.96678 1.21649 1.00572 0.98024 0.95171 1.21279 0.95046 1.00844 0.92926 0.89325 1.21183 0.77617 1.01197 0.97627 1.44920 1.07714 1.75276 1.10642 1.15958 0.81121 0.78214 0.84370 1.90882 1.72038 1.57299 1.31349 1.44682 1.04798 1.75040 1.13685 1.20571 0.87026 1.03237 0.87824 1.20414 0.88109 0.83851 0.85578 1.90463 1.82386 1.55411 1.22901 1.41821 1.06177 1.60137 1.11292 1.19718 0.82598 1.46917 0.97608 0.89525 1.26118 1.04643 0.95857 0.94396 1.69677 1.37025 1.46835 1.02039 0.84930 0.76222 0.78996 0.77845 1.19507 1.19656 1.19487 1.21952 0.93376 1.00291 0.90524 0.92628 0.92562 0.92176 0.91508 0.92548 0.93189 0.93370 0.94722 0.90860 0.90165 0.95310 0.91167 0.90656 0.91453 0.92453 0.92149 0.92553 0.75446 0.75215 0.89136 0.89132 0.76710 0.91084 0.94804 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 71.98 0.66 -0.56 16 2 C -0.09 -0.88 2.97 -10.79 -0.03 -0.92 16 3 C -0.13 -1.52 9.08 71.98 0.65 -0.87 16 4 C 0.06 0.67 4.39 86.31 0.38 1.05 16 5 N -0.54 -6.77 4.03 -896.36 -3.62 -10.39 16 6 C 0.05 0.64 5.29 86.33 0.46 1.10 16 7 C -0.11 -1.29 6.09 30.65 0.19 -1.10 16 8 C -0.12 -1.55 5.13 30.67 0.16 -1.39 16 9 C -0.08 -1.15 2.39 -10.74 -0.03 -1.17 16 10 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 11 C 0.15 2.88 5.07 86.38 0.44 3.31 16 12 N -0.73 -16.49 5.31 -478.52 -2.54 -19.03 16 13 C 0.70 22.45 8.57 179.05 1.53 23.98 16 14 O -0.63 -24.79 16.34 -4.01 -0.07 -24.86 16 15 N -0.72 -24.02 5.53 -482.29 -2.67 -26.69 16 16 C 0.14 5.28 6.15 85.64 0.53 5.80 16 17 C 0.43 20.05 7.85 87.66 0.69 20.74 16 18 O -0.62 -32.08 15.24 -3.06 -0.05 -32.12 16 19 N -0.56 -28.13 5.29 -306.98 -1.62 -29.75 16 20 C -0.34 -18.69 9.68 84.04 0.81 -17.87 16 21 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 22 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 23 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 24 Si 1.00 41.68 29.55 68.60 2.03 43.70 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 C 0.07 0.89 4.71 86.33 0.41 1.30 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.71 6.70 -2.39 -0.02 0.69 16 33 H 0.06 0.77 7.75 -2.38 -0.02 0.75 16 34 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.03 0.39 8.00 -2.39 -0.02 0.37 16 37 H 0.07 0.83 7.79 -2.39 -0.02 0.81 16 38 H 0.08 0.85 6.65 -2.38 -0.02 0.84 16 39 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.91 7.26 -2.39 -0.02 0.89 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.41 7.31 7.69 -92.71 -0.71 6.60 16 47 H 0.41 13.13 7.45 -92.71 -0.69 12.44 16 48 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 51 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 52 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.08 1.04 7.93 -2.39 -0.02 1.03 16 Total: -1.00 -66.02 420.46 -2.16 -68.18 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -1.22 Total: 45.97 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 7.31 Total: 33.38 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -10.17 Total: -134.26 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.11 Total: -56.98 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.02 -2.16 -68.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358293963.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds