Wall clock time and date at job start Sat Apr 11 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47474 * 2 1 4 4 C 1.53004 * 109.47340 * 119.99774 * 2 1 3 5 5 N 1.46907 * 109.46584 * 64.99698 * 4 2 1 6 6 C 1.46839 * 110.99748 * 65.79647 * 5 4 2 7 7 C 1.53046 * 109.52323 * 185.83596 * 6 5 4 8 8 C 1.53128 * 109.30632 * 300.84028 * 7 6 5 9 9 C 1.53120 * 109.15635 * 57.59368 * 8 7 6 10 10 H 1.09000 * 109.50415 * 62.36747 * 9 8 7 11 11 C 1.53009 * 109.49803 * 182.44005 * 9 8 7 12 12 N 1.46497 * 109.47402 * 294.92028 * 11 9 8 13 13 C 1.34776 * 120.00017 * 180.02562 * 12 11 9 14 14 O 1.21585 * 119.99999 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99898 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00070 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47124 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47350 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46893 * 120.00104 * 24 22 20 27 27 H 1.48493 * 109.47057 * 240.00163 * 24 22 20 28 28 C 1.46854 * 110.99622 * 190.00099 * 5 4 2 29 29 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47327 * 300.00308 * 1 2 3 31 31 H 1.09004 * 109.47055 * 59.99846 * 1 2 3 32 32 H 1.08996 * 109.47327 * 239.99692 * 2 1 3 33 33 H 1.08999 * 109.46967 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46583 * 300.00155 * 3 2 1 35 35 H 1.08996 * 109.47094 * 59.99550 * 3 2 1 36 36 H 1.09004 * 109.46847 * 305.00454 * 4 2 1 37 37 H 1.08991 * 109.47547 * 184.99891 * 4 2 1 38 38 H 1.09004 * 109.46417 * 305.84779 * 6 5 4 39 39 H 1.08997 * 109.46695 * 65.82880 * 6 5 4 40 40 H 1.08998 * 109.50049 * 60.75566 * 7 6 5 41 41 H 1.08997 * 109.50231 * 180.83989 * 7 6 5 42 42 H 1.08994 * 109.49289 * 297.70895 * 8 7 6 43 43 H 1.09000 * 109.55315 * 177.51713 * 8 7 6 44 44 H 1.08999 * 109.46881 * 174.92247 * 11 9 8 45 45 H 1.08997 * 109.47071 * 54.92693 * 11 9 8 46 46 H 0.97005 * 119.99645 * 0.02562 * 12 11 9 47 47 H 0.97005 * 119.99770 * 359.97438 * 15 13 12 48 48 H 1.09000 * 109.46914 * 59.99690 * 16 15 13 49 49 H 1.09002 * 109.46777 * 299.99649 * 16 15 13 50 50 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 51 51 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 52 52 H 1.09003 * 109.45880 * 54.14522 * 28 5 4 53 53 H 1.09000 * 109.46235 * 294.18089 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6512 -2.1367 1.1904 6 6 2.3291 -2.8229 0.0833 7 6 1.7930 -4.2513 -0.0380 8 6 2.0385 -4.9974 1.2765 9 6 1.3637 -4.2354 2.4204 10 1 0.2871 -4.2061 2.2529 11 6 1.6552 -4.9414 3.7462 12 7 1.0286 -6.2655 3.7426 13 6 1.1524 -7.0726 4.8149 14 8 1.7837 -6.7014 5.7855 15 7 0.5763 -8.2910 4.8113 16 6 0.7103 -9.1681 5.9770 17 6 -0.0205 -10.4606 5.7199 18 8 -0.5962 -10.6326 4.6663 19 7 -0.0335 -11.4260 6.6603 20 6 -0.6988 -12.6018 6.4266 21 1 -1.2121 -12.7545 5.4888 22 6 -0.7074 -13.5993 7.3939 23 7 -0.0782 -13.4155 8.5328 24 14 -1.6133 -15.2016 7.0751 25 1 -2.2348 -15.1591 5.7271 26 1 -0.6549 -16.3339 7.1423 27 1 -2.6698 -15.3856 8.1022 28 6 1.9122 -2.8077 2.4704 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1262 -0.6443 1.2952 38 1 2.1425 -2.2849 -0.8462 39 1 3.4014 -2.8528 0.2765 40 1 0.7233 -4.2221 -0.2449 41 1 2.3070 -4.7651 -0.8503 42 1 3.1103 -5.0613 1.4637 43 1 1.6189 -6.0012 1.2100 44 1 1.2517 -4.3508 4.5687 45 1 2.7326 -5.0495 3.8710 46 1 0.5247 -6.5615 2.9683 47 1 0.0723 -8.5870 4.0371 48 1 0.2834 -8.6775 6.8518 49 1 1.7653 -9.3761 6.1558 50 1 0.4273 -11.2887 7.5028 51 1 -0.0845 -14.1118 9.2082 52 1 1.4228 -2.2585 3.2747 53 1 2.9865 -2.8375 2.6524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358293964.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:09 Heat of formation + Delta-G solvation = -110.712934 kcal Electronic energy + Delta-G solvation = -29187.084370 eV Core-core repulsion = 25091.613990 eV Total energy + Delta-G solvation = -4095.470381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.27979 -40.40082 -39.90329 -37.45505 -36.23604 -35.60950 -35.24758 -33.38257 -33.19014 -32.28905 -29.30099 -27.90700 -27.20902 -26.99854 -25.94969 -23.86478 -22.94681 -21.92421 -21.34976 -20.76218 -20.50337 -20.09300 -19.46475 -17.57396 -17.41105 -17.01112 -16.87525 -16.50186 -16.20281 -16.08176 -15.91324 -15.69349 -15.38009 -15.18138 -15.09828 -14.87868 -14.72915 -14.23863 -13.99068 -13.92807 -13.73328 -13.53913 -13.30973 -13.24127 -13.00660 -12.94123 -12.89513 -12.59590 -12.43347 -12.10448 -12.06533 -11.83685 -11.81143 -11.69645 -11.56799 -11.51024 -11.43381 -11.21659 -11.03883 -10.54173 -10.41453 -10.08879 -9.79166 -9.22227 -8.50055 -6.00140 1.36049 1.43498 1.56132 1.63535 1.90972 2.13596 2.29608 2.87735 3.08615 3.17370 3.37014 3.74322 3.75165 3.90700 3.97560 4.09865 4.21737 4.23046 4.29597 4.38336 4.44347 4.46807 4.47465 4.55872 4.59781 4.63207 4.72355 4.75352 4.79342 4.85990 4.87876 4.95170 5.01482 5.09954 5.12224 5.16966 5.19292 5.28499 5.32005 5.32805 5.40087 5.43746 5.49095 5.54043 5.56964 5.92635 5.97246 6.17077 6.19021 6.49372 7.04467 7.04806 7.44143 7.55059 7.95805 8.67117 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033403 B = 0.001482 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.057718 B =18884.147182 C =19226.939101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.146 4.146 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.053 3.947 7 C -0.112 4.112 8 C -0.116 4.116 9 C -0.081 4.081 10 H 0.089 0.911 11 C 0.148 3.852 12 N -0.729 5.729 13 C 0.704 3.296 14 O -0.634 6.634 15 N -0.724 5.724 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.067 3.933 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.409 0.591 47 H 0.410 0.590 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.399 0.601 51 H 0.279 0.721 52 H 0.080 0.920 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 26.739 -17.136 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.067 4.067 5 N -0.262 5.262 6 C -0.075 4.075 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.101 4.101 10 H 0.107 0.893 11 C 0.024 3.976 12 N -0.386 5.386 13 C 0.403 3.597 14 O -0.516 6.516 15 N -0.382 5.382 16 C 0.013 3.987 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.246 0.754 47 H 0.248 0.752 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.233 0.767 51 H 0.089 0.911 52 H 0.098 0.902 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.867 26.819 -16.860 32.050 hybrid contribution 0.390 -1.084 0.200 1.169 sum 5.257 25.735 -16.660 31.105 Atomic orbital electron populations 1.21673 0.94676 1.01865 1.00962 1.21122 0.96584 0.95850 0.97392 1.21808 1.00899 0.95444 1.02208 1.22193 0.97721 0.87587 0.99200 1.61874 1.58674 1.02152 1.03532 1.22174 0.95352 0.95099 0.94859 1.21550 1.02099 0.94279 0.97069 1.21651 1.00312 0.98996 0.94459 1.21272 1.01921 0.94099 0.92776 0.89304 1.21183 0.97230 0.81239 0.97969 1.44920 1.58513 1.17365 1.17753 1.15954 0.79677 0.80433 0.83595 1.90880 1.48509 1.76121 1.36055 1.44684 1.57773 1.15246 1.20509 1.20571 1.00930 0.87987 0.89172 1.20417 0.85767 0.86571 0.85150 1.90465 1.51104 1.81884 1.27682 1.41839 1.46841 1.14092 1.16721 1.19786 1.30690 0.92824 1.03330 0.89541 1.26119 0.97793 1.02672 0.94481 1.69690 1.42598 1.36404 1.06937 0.84811 0.77907 0.76804 0.78452 1.19403 1.19691 1.19667 1.21936 0.98652 0.93670 0.91919 0.92529 0.93321 0.93078 0.91254 0.92677 0.92095 0.92540 0.90734 0.95058 0.89909 0.95401 0.91158 0.90650 0.92481 0.91425 0.92147 0.92563 0.75441 0.75215 0.89122 0.89128 0.76709 0.91102 0.90167 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.08 71.98 0.65 -0.82 16 2 C -0.09 -0.90 2.84 -10.79 -0.03 -0.93 16 3 C -0.15 -1.20 9.19 71.98 0.66 -0.54 16 4 C 0.06 0.68 4.35 86.30 0.38 1.06 16 5 N -0.54 -6.81 4.11 -896.34 -3.68 -10.49 16 6 C 0.05 0.62 5.30 86.33 0.46 1.08 16 7 C -0.11 -1.30 6.09 30.65 0.19 -1.11 16 8 C -0.12 -1.55 5.13 30.68 0.16 -1.40 16 9 C -0.08 -1.15 2.39 -10.74 -0.03 -1.17 16 10 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 11 C 0.15 2.88 5.07 86.38 0.44 3.32 16 12 N -0.73 -16.50 5.31 -478.53 -2.54 -19.04 16 13 C 0.70 22.45 8.57 179.05 1.53 23.98 16 14 O -0.63 -24.79 16.34 -3.99 -0.07 -24.86 16 15 N -0.72 -24.01 5.53 -482.31 -2.67 -26.68 16 16 C 0.14 5.27 6.15 85.63 0.53 5.80 16 17 C 0.43 20.07 7.85 87.66 0.69 20.76 16 18 O -0.62 -32.08 15.24 -3.05 -0.05 -32.13 16 19 N -0.56 -28.15 5.29 -306.99 -1.62 -29.77 16 20 C -0.34 -18.58 9.68 84.04 0.81 -17.76 16 21 H 0.09 5.01 7.16 -2.92 -0.02 4.99 16 22 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 23 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 24 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 C 0.07 0.90 4.74 86.32 0.41 1.31 16 29 H 0.06 0.75 7.75 -2.39 -0.02 0.73 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.70 6.22 -2.39 -0.01 0.69 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.85 7.99 -2.38 -0.02 0.83 16 37 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 38 H 0.08 0.87 6.12 -2.39 -0.01 0.86 16 39 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.91 7.26 -2.39 -0.02 0.89 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.41 7.31 7.69 -92.70 -0.71 6.60 16 47 H 0.41 13.13 7.45 -92.70 -0.69 12.44 16 48 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.40 19.32 7.90 -92.70 -0.73 18.59 16 51 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 52 H 0.08 1.05 8.02 -2.39 -0.02 1.03 16 53 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -66.19 419.79 -2.23 -68.42 By element: Atomic # 1 Polarization: 46.94 SS G_CDS: -1.22 Total: 45.72 kcal Atomic # 6 Polarization: 26.20 SS G_CDS: 7.31 Total: 33.51 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -10.23 Total: -134.42 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.11 Total: -56.99 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -66.19 -2.23 -68.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358293964.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.295 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds