Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47243 * 2 1 4 4 C 1.52993 * 109.46879 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47190 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46765 * 54.99578 * 5 4 3 7 7 N 1.46505 * 109.46773 * 295.00179 * 5 4 3 8 8 C 1.34780 * 119.99366 * 299.99582 * 7 5 4 9 9 N 1.34783 * 119.99240 * 180.02562 * 8 7 5 10 10 O 1.21579 * 120.00643 * 0.02562 * 8 7 5 11 11 C 1.50694 * 109.47400 * 174.99853 * 5 4 3 12 12 O 1.21283 * 120.00167 * 99.99907 * 11 5 4 13 13 N 1.34776 * 120.00242 * 279.99971 * 11 5 4 14 14 C 1.46502 * 119.99963 * 179.97438 * 13 11 5 15 15 C 1.53007 * 109.46822 * 179.72251 * 14 13 11 16 16 C 1.53039 * 109.46139 * 295.03130 * 15 14 13 17 17 C 1.53189 * 109.31085 * 178.60325 * 16 15 14 18 18 N 1.46921 * 108.77087 * 54.65005 * 17 16 15 19 19 C 1.36946 * 120.63026 * 126.35749 * 18 17 16 20 20 H 1.07996 * 119.99835 * 331.86729 * 19 18 17 21 21 C 1.38804 * 119.99671 * 151.86527 * 19 18 17 22 22 N 1.31623 * 120.00220 * 343.07535 * 21 19 18 23 23 Si 1.86800 * 120.00070 * 163.07456 * 21 19 18 24 24 H 1.48506 * 109.46805 * 59.99989 * 23 21 19 25 25 H 1.48496 * 109.47391 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47198 * 300.00268 * 23 21 19 27 27 C 1.46926 * 118.74182 * 306.38995 * 18 17 16 28 28 C 1.53034 * 109.45704 * 174.97459 * 15 14 13 29 29 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46463 * 299.99977 * 1 2 3 31 31 H 1.09002 * 109.47194 * 59.99379 * 1 2 3 32 32 H 1.09004 * 109.46463 * 240.00023 * 2 1 3 33 33 H 1.09002 * 109.47194 * 120.00620 * 2 1 3 34 34 H 1.09006 * 109.46681 * 60.00301 * 3 2 1 35 35 H 1.08997 * 109.47091 * 300.00322 * 3 2 1 36 36 H 1.08998 * 109.47692 * 60.00248 * 4 3 2 37 37 H 1.09005 * 109.47213 * 299.99595 * 4 3 2 38 38 H 0.96992 * 120.00175 * 119.99902 * 7 5 4 39 39 H 0.96999 * 120.00203 * 359.97438 * 9 8 7 40 40 H 0.96993 * 119.99706 * 180.02562 * 9 8 7 41 41 H 0.97003 * 120.00064 * 359.72643 * 13 11 5 42 42 H 1.08990 * 109.47198 * 299.72189 * 14 13 11 43 43 H 1.08994 * 109.47089 * 59.73104 * 14 13 11 44 44 H 1.09001 * 109.45468 * 55.00233 * 15 14 13 45 45 H 1.09001 * 109.49560 * 298.56676 * 16 15 14 46 46 H 1.08998 * 109.49729 * 58.66478 * 16 15 14 47 47 H 1.09003 * 109.59982 * 294.86407 * 17 16 15 48 48 H 1.08999 * 109.70544 * 174.51072 * 17 16 15 49 49 H 0.97008 * 119.99850 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.58361 * 293.82061 * 27 18 17 51 51 H 1.08994 * 109.70687 * 173.45666 * 27 18 17 52 52 H 1.09001 * 109.49894 * 301.33986 * 28 15 14 53 53 H 1.09004 * 109.50180 * 61.43494 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4234 0.8423 7 7 3.6920 3.5406 -1.2513 8 6 4.1161 3.0457 -2.4310 9 7 3.7595 3.6493 -3.5822 10 8 4.8203 2.0550 -2.4569 11 6 5.5820 2.8866 0.1232 12 8 6.2713 3.0401 -0.8629 13 7 6.1595 2.7175 1.3292 14 6 7.6196 2.7186 1.4489 15 6 8.0113 2.5162 2.9140 16 6 7.5358 3.7143 3.7391 17 6 7.8989 3.4920 5.2107 18 7 9.3408 3.2275 5.3071 19 6 10.1313 3.9669 6.1460 20 1 9.8588 4.9835 6.3881 21 6 11.2827 3.4098 6.6850 22 7 11.4494 2.1042 6.6742 23 14 12.5956 4.5128 7.4259 24 1 12.0130 5.2898 8.5494 25 1 13.7161 3.6788 7.9301 26 1 13.1010 5.4467 6.3879 27 6 9.9188 2.1549 4.4859 28 6 9.5328 2.3920 3.0224 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8892 38 1 3.1299 4.3308 -1.2307 39 1 3.1973 4.4395 -3.5616 40 1 4.0643 3.2930 -4.4312 41 1 5.6083 2.5986 2.1185 42 1 8.0341 1.9100 0.8470 43 1 8.0123 3.6722 1.0963 44 1 7.5448 1.6066 3.2923 45 1 8.0211 4.6207 3.3773 46 1 6.4549 3.8163 3.6426 47 1 7.3439 2.6381 5.5993 48 1 7.6511 4.3823 5.7888 49 1 12.2539 1.7148 7.0513 50 1 9.5285 1.1919 4.8153 51 1 11.0044 2.1620 4.5832 52 1 9.8734 1.5529 2.4158 53 1 9.9991 3.3111 2.6675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362414782.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -97.175896 kcal Electronic energy + Delta-G solvation = -30593.117293 eV Core-core repulsion = 26498.233922 eV Total energy + Delta-G solvation = -4094.883371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.58639 -40.09843 -39.17113 -37.14615 -36.33086 -35.13822 -34.44954 -34.34716 -32.55716 -31.49948 -31.19453 -28.85811 -27.35836 -25.59205 -23.90405 -23.68573 -22.92020 -22.33894 -21.70448 -21.00703 -20.53088 -19.51613 -18.70255 -18.40273 -17.60930 -16.97049 -16.79158 -16.43737 -16.29117 -15.77632 -15.66276 -15.31255 -15.27532 -15.16934 -15.02122 -14.82098 -14.72424 -14.20204 -14.01684 -13.90338 -13.79927 -13.48755 -13.33065 -12.99467 -12.80423 -12.70214 -12.54317 -12.26837 -12.16743 -12.02761 -11.98330 -11.83309 -11.74392 -11.60705 -11.43058 -11.28951 -11.12233 -11.08547 -10.78645 -10.52059 -10.43547 -9.99146 -9.80928 -8.65333 -7.86132 -5.31045 1.46310 1.49229 1.55576 1.69144 1.94691 2.30205 2.52045 2.55877 3.28227 3.70098 3.72894 3.75694 3.85636 3.96241 3.97830 4.05644 4.10995 4.20522 4.29692 4.45824 4.53447 4.55766 4.58515 4.72185 4.74227 4.82504 4.88023 4.90893 4.94950 5.03499 5.04510 5.06982 5.16847 5.26191 5.30435 5.31745 5.35659 5.41803 5.42706 5.52315 5.54079 5.56803 5.58332 5.66948 5.79731 6.00530 6.14091 6.41105 6.67598 7.16803 7.23865 7.39787 7.89054 7.89667 8.40383 9.19891 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.002120 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.959861 B =13206.825877 C =14071.039265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.130 4.130 5 C 0.159 3.841 6 H 0.156 0.844 7 N -0.719 5.719 8 C 0.700 3.300 9 N -0.856 5.856 10 O -0.619 6.619 11 C 0.489 3.511 12 O -0.561 6.561 13 N -0.715 5.715 14 C 0.141 3.859 15 C -0.076 4.076 16 C -0.112 4.112 17 C 0.140 3.860 18 N -0.613 5.613 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.281 1.281 27 C 0.179 3.821 28 C -0.124 4.124 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.418 0.582 39 H 0.411 0.589 40 H 0.415 0.585 41 H 0.414 0.586 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.020 0.980 48 H 0.053 0.947 49 H 0.249 0.751 50 H -0.001 1.001 51 H 0.049 0.951 52 H 0.063 0.937 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.222 3.071 -16.087 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.139 4.139 4 C -0.169 4.169 5 C 0.049 3.951 6 H 0.173 0.827 7 N -0.377 5.377 8 C 0.398 3.602 9 N -0.425 5.425 10 O -0.497 6.497 11 C 0.274 3.726 12 O -0.438 6.438 13 N -0.369 5.369 14 C 0.017 3.983 15 C -0.095 4.095 16 C -0.150 4.150 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.084 0.916 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.207 1.207 27 C 0.053 3.947 28 C -0.163 4.163 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.255 0.745 39 H 0.242 0.758 40 H 0.247 0.753 41 H 0.251 0.749 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.017 0.983 51 H 0.068 0.932 52 H 0.082 0.918 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.032 2.281 -16.575 30.109 hybrid contribution 0.947 0.599 0.438 1.203 sum -24.085 2.880 -16.137 29.134 Atomic orbital electron populations 1.21744 0.94948 1.01760 1.02173 1.21532 0.96548 0.97105 1.01413 1.21482 0.92572 0.96893 1.02995 1.21936 0.97552 0.94050 1.03323 1.20854 0.89122 0.96868 0.88232 0.82702 1.44526 1.56236 1.33763 1.03211 1.16203 0.79251 0.82838 0.81901 1.42800 1.58359 1.34573 1.06803 1.90944 1.42551 1.29522 1.86733 1.21701 0.92379 0.75896 0.82617 1.90746 1.65900 1.49104 1.38083 1.45910 1.07265 1.73980 1.09772 1.21132 0.80632 1.00552 0.96022 1.21128 0.95741 0.99506 0.93116 1.21915 1.00944 0.96933 0.95254 1.21093 0.84021 0.98154 0.95292 1.44330 1.03478 1.39486 1.46334 1.19475 1.04564 0.94130 1.20982 0.91640 1.25793 1.02613 0.96485 0.99944 1.70176 1.27658 1.10388 1.49922 0.85377 0.78848 0.78081 0.78376 1.19907 1.22148 1.20686 1.20538 0.97859 0.88807 0.87523 1.21989 0.95665 1.00765 0.97909 0.92923 0.91743 0.92787 0.93882 0.91846 0.89506 0.92063 0.92602 0.90083 0.74460 0.75844 0.75309 0.74882 0.93391 0.93106 0.90464 0.93299 0.89118 0.96244 0.92816 0.94192 0.98324 0.93218 0.91844 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.62 5.93 30.59 0.18 -1.44 16 3 C -0.10 -1.10 5.10 30.59 0.16 -0.95 16 4 C -0.13 -2.10 4.54 30.60 0.14 -1.96 16 5 C 0.16 2.41 3.01 44.25 0.13 2.55 16 6 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 7 N -0.72 -10.17 4.66 -461.39 -2.15 -12.32 16 8 C 0.70 15.25 7.59 179.05 1.36 16.61 16 9 N -0.86 -10.84 8.88 -184.74 -1.64 -12.48 16 10 O -0.62 -20.79 13.03 18.49 0.24 -20.55 16 11 C 0.49 12.31 6.82 87.66 0.60 12.91 16 12 O -0.56 -20.42 13.68 19.42 0.27 -20.15 16 13 N -0.72 -15.72 5.27 -463.07 -2.44 -18.16 16 14 C 0.14 3.98 5.06 86.38 0.44 4.42 16 15 C -0.08 -2.29 2.19 -10.77 -0.02 -2.31 16 16 C -0.11 -3.32 5.25 30.67 0.16 -3.16 16 17 C 0.14 5.42 6.52 86.36 0.56 5.98 16 18 N -0.61 -30.49 2.99 -699.10 -2.09 -32.58 16 19 C -0.26 -14.39 9.58 84.03 0.81 -13.59 16 20 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 21 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 22 N -0.94 -55.90 11.19 21.65 0.24 -55.66 16 23 Si 0.96 45.29 29.59 68.60 2.03 47.32 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C 0.18 8.65 5.30 86.37 0.46 9.11 16 28 C -0.12 -4.67 5.36 30.67 0.16 -4.51 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 0.68 7.75 -2.39 -0.02 0.66 16 36 H 0.06 1.42 6.04 -2.39 -0.01 1.40 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.42 2.41 8.84 -92.71 -0.82 1.59 16 39 H 0.41 1.90 8.84 -92.71 -0.82 1.08 16 40 H 0.42 5.13 8.93 -92.71 -0.83 4.30 16 41 H 0.41 6.30 7.65 -92.71 -0.71 5.59 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 1.94 7.15 -2.39 -0.02 1.92 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 49 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 50 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 52 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -84.13 413.37 -1.52 -85.65 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -2.24 Total: 18.62 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.26 Total: 20.30 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -8.08 Total: -131.19 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: 0.51 Total: -40.70 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -84.13 -1.52 -85.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362414782.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.525 kcal (2) G-P(sol) polarization free energy of solvation -84.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds